Multi-user equipment approved in grant 2017/50333-7: genetic analyzer

• Grant number: 18/21193-5
• Support Opportunities: Multi-user Equipment Program
• Start date: November 01, 2018
• End date: October 31, 2025
• Field of knowledge: Health Sciences - Collective Health - Public Health
• Principal Investigator: Carlos Henrique Camargo
• Grantee: Carlos Henrique Camargo
• Host Institution: Instituto Adolfo Lutz (IAL). São Paulo , SP, Brazil
• City of the host institution: São Paulo
• Associated research grant: 17/50333-7 - Institutional research development plan of the Instituto Adolfo Lutz (PDIp), AP.PDIP
• EMU web page: http://www.ial.sp.gov.br/ial/servicos/equipamentos-multiusuarios
• Type of equipment: Caracterização e Análises de Amostras - Proteínas/Ácidos nuclêicos - Sequenciadores
• Manufacturer: Applied Biosystems
• Model: Modelo 3500

Abstract

The Plan for the Institutional Development of Research of the Instituto Adolfo Lutz (PDIP, from Portuguese Plano de Desenvolvimento Institucional de Pesquisa) was based in strategies or the transformation that it intends to achieve in the next few years as an institution of science and research in the Public Health area. The PDIP was designed to improve laboratory actions aiming to help in the epidemiological vigilance of infectious diseases, promoting strategies to protect, prevent and promote health and improving the population quality of life. To achieve such aims, the upgrade of equipment is essential, including the implementation of a new capillary sequencing equipment as a Multi-User Equipment (EMU-FAPESP) modality. Currently, the main applications of short fragment are the genotyping of the HIV, hepatitis virus, influenza virus and arbovirus. In Bacteriology, it can be employed to identify emerging and reemergent pathogens as well as to identify emerging clones by multi-locus sequence typing (MLST) analysis by sequencing conserved genes that reflect the evolutionary history of an organism. The applications of sequencing can be broadly amplified, allowing the utilization to new research projects in our cores of Bacteriology, Immunology, Pathology and Parasitology Divisions, and also, of our Regional Laboratories and also for others Research Institutes and Universities. (AU)

Scientific publications

(8)

(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)

YAMADA, AMANDA YAEKO; SANTOS, ALESSANDRO MARQUES DOS; SOUZA, ANDREIA RODRIGUES DE; CAMPOS, KAROLINE RODRIGUES; SACCHI, CLAUDIO TAVARES; TIBA-CASAS, MONIQUE RIBEIRO; CAMARGO, CARLOS HENRIQUE. A clinical Pseudomonas chlororaphis isolate harboring a new blaVIM-2 borne integron, In2088, isolated from bloodstream infection in a newborn patient. INFECTION GENETICS AND EVOLUTION, v. 96, DEC 2021. (19/21361-8, 17/50333-7, 18/21192-9, 18/21193-5)

CARMONA, RITA DE CASSIA COMPAGNOLI; CILLI, AUDREY; DA COSTA, ANTONIO CHARLYS; REIS, FABRICIO CALDEIRA; LEAL, ELCIO; DOS SANTOS, FABIANA CRISTINA PEREIRA; MACHADO, BRAULIO CAETANO; LOPES, CRISTINA SANTIAGO; AFONSO, ANA MARIA SARDINHA; TIMENETSKY, MARIA DO CARMO SAMPAIO TAVARES; et al. Pegivirus Detection in Cerebrospinal Fluid from Patients with Central Nervous System Infections of Unknown Etiology in Brazil by Viral Metagenomics. MICROORGANISMS, v. 12, n. 1, p. 13-pg., 2024-01-01. (18/21193-5, 17/50333-7)

DE PAULA, CAROLINA LECHINSKI; RISSETTI, RAFAELA MASTRANGELO; YAMADA, AMANDA YAEKO; BERTANI, AMANDA MARIA DE JESUS; SACCHI, CLAUDIO TAVARES; CAMPOS, KAROLINE RODRIGUES; PORTILHO, FABIO VINICIUS RAMOS; PAZ, PATRIK JUNIOR DE LIMA; BELLO, THAIS SPESSOTTO; ARABE FILHO, MARCELO FAGALI; et al. Klebsiella pneumoniae complex isolated from diseased companion animals reveals genomic diversity, multidrug resistance, and extended-spectrum β-lactamase-encoding genes. Journal of Applied Microbiology, v. 136, n. 6, p. 6-pg., 2025-06-01. (17/50333-7, 18/21192-9, 18/21193-5, 15/19688-8)

RISSETTI, RAFAELA MASTRANGELO; DE PAULA, CAROLINA LECHINSKI; YAMADA, AMANDA YAEKO; BERTANI, AMANDA MARIA DE JESUS; COSTA, ANA BEATRIZ NASCIMENTO; SACCHI, CLAUDIO TAVARES; CAMPOS, KAROLINE RODRIGUES; GUERRA, SIMONY TREVISAN; GUIMARAES, FELIPE FREITAS; JOAQUIM, SAMEA FERNANDES; et al. Detection of multiple clones and extended-spectrum β-lactamase production among Klebsiella pneumoniae complex isolates from the milk of cows with different severity scores of clinical mastitis. Letters in Applied Microbiology, v. 78, n. 10, p. 8-pg., 2025-10-01. (18/21193-5, 17/50333-7, 18/21192-9, 15/19688-8)

CAMARGO, CARLOS HENRIQUE; GONCALVES, CLAUDIA REGINA; GOMES PAGNOCA, ERICA VALESSA RAMOS; CAMPOS, KAROLINE RODRIGUES; MARTINS MONTANHA, JANAINA OLHER; PINHEIRO FLORES, MARICELIA NAVARRO; COSTA NUNES SOARES, MARCIA MARIA; TOLENTINO BINHARDI, FERNANDA MODESTO; FERREIRA, PATRICIA MARQUES; FRUGIS YU, ANA LUCIA; et al. SARS-CoV-2 reinfection in a healthcare professional in inner Sao Paulo during the first wave of COVID-19 in Brazil. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, v. 101, n. 4, DEC 2021. (17/50333-7, 18/21193-5)

CAMARGO, CARLOS HENRIQUE; YAMADA, AMANDA YAEKO; NAGAMORI, FILIPE ONISHI; DE SOUZA, ANDREIA RODRIGUES; TIBA-CASAS, MONIQUE RIBEIRO; DE MORAES FRANCA, FLAVIA APARECIDA; TRIGUEIRO NOBREGA PORTO, MARIA HELENA; DE LIMA GARZON, MAGDA LOURDES; HIGGINS, PAUL; MADALOSSO, GERALDINE; et al. Clonal spread of ArmA- and OXA-23-coproducing Acinetobacter baumannii International Clone 2 in Brazil during the first wave of the COVID-19 pandemic. Journal of Medical Microbiology, v. 71, n. 4, p. 6-pg., 2022-01-01. (17/16988-6, 20/06157-2, 17/50333-7, 18/21192-9, 18/21193-5)

YAMADA, AMANDA YAEKO; DE SOUZA, ANDREIA RODRIGUES; DE CASTRO LIMA, MARISA DE JESUS; REIS, ALEX DOMINGOS; CAMPOS, KAROLINE RODRIGUES; DE JESUS BERTANI, AMANDA MARIA; TADEU DE ARAUJO, LEONARDO JOSE; SACCHI, CLAUDIO TAVARES; TIBA-CASAS, MONIQUE RIBEIRO; CAMARGO, CARLOS HENRIQUE. Co-production of Classes A and B Carbapenemases BKC-1 and VIM-2 in a Clinical Pseudomonas Putida Group Isolate from Brazil. Current Microbiology, v. 79, n. 9, p. 5-pg., 2022-09-01. (17/50333-7, 18/21193-5, 18/21192-9)

CARMONA, RITA CASSIA COMPAGNOLI; REIS, FABRICIO CALDEIRA; CILLI, AUDREY; DIAS, JULIANA MONTI MAIFRINO; MACHADO, BRAULIO CAETANO; DE MORAIS, DANIELE RITA; JORGE, ADRIANA VIEIRA; DIAS, AMANDA MEIRELES NUNES; DE SOUSA, CLEUSA APARECIDA; CALOU, SABRINA BONETTI; et al. Beyond Poliomyelitis: A 21-Year Study of Non-Polio Enterovirus Genotyping and Its Relevance in Acute Flaccid Paralysis in São Paulo, Brazil. Viruses-Basel, v. 16, n. 12, p. 20-pg., 2024-12-01. (17/05350-0, 17/50333-7, 18/21193-5)