An intercontinental approach for the investigation of chromosome evolution, genetic diversity and biogeography in the order Osteoglossiformes (Teleostei: Osteoglossomorpha). Part III

• Grant number: 18/22033-1
• Support Opportunities: Regular Research Grants
• Duration: March 01, 2019 - February 28, 2021
• Field of knowledge: Biological Sciences - Genetics - Animal Genetics
• Principal Investigator: Marcelo de Bello Cioffi
• Grantee: Marcelo de Bello Cioffi
• Host Institution: Centro de Ciências Biológicas e da Saúde (CCBS). Universidade Federal de São Carlos (UFSCAR). São Carlos , SP, Brazil
• Associated researchers: Carlos Congrains Castillo ; Eliana Feldberg ; Luiz Antonio Carlos Bertollo ; Manolo Fernandez Perez ; Orlando Moreira Filho ; Terumi Hatanaka
• Associated grant(s): 19/04877-0 - Evolutionary cytogenomics, genetic diversity and Biogrography of Arowana species (Teleostei: Osteoglossiformes), AP.R SPRINT
• Associated scholarship(s): 19/06439-0 - Technician TT3 Work Plan on the Fish Cytogenetic Laboratory, BP.TT

Abstract

This project will continue the previous project (FAPESP 2016/22196-2), focusing on chromosome evolution, genetic diversity and phylogeography of Osteoglossiformes species representative of different intercontinental regions, counting on a network of international collaborators equally interested in this promising approach. New generation sequencing of Ultra-Preserved Elements (EUCs) and DArT-Seq (Diversity Array Technology Sequencing) markers will be used in a broad sampling of representatives of all order families. It will be aimed to infer about the diversification of related species, present in different continents, in view of their fragmentation process and the occurrence of marine dispersions of ancestors currently extinct. In this context, the arowana (Osteoglossidae) species are particularly noteworthy, since they present totally uncovered investigations, where comparative chromosomal and genomic analyzes will be focused on all species present in South America, Asia and Australia, focusing on the processes of karyotype evolution and reconstruction of biogeographic models that can clarify the current geographic distribution of this group. In addition, the phylogeographic history of one of the most known and representative species of Osteoglossiformes, pirarucu (Arapaima gigas) will be investigated from the development of evolutionary models, which will be tested with recent methodologies of phylogeographic analysis. Allied to this project is an integrated team of 06 research groups, representative of all the 5 continents, adding efforts to the viability and execution of the objectives that are being proposed. The present proposal will provide significant advances in the understanding of chromosomal evolution, organization and genomic diversification and biodiversity of the Osteoglossiformes, one of the most basic orders among fishes and widely distributed across several continents of the old and the new worlds. (AU)

Scientific publications

(25)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

SANTOS DE SOUZA, FERNANDO HENRIQUE; PEREZ, MANOLO FERNANDEZ; CARLOS BERTOLLO, LUIZ ANTONIO; DE OLIVEIRA, EZEQUIEL AGUIAR; LAVOUE, SEBASTIEN; GESTICH, CARLA CRISTINA; RAB, PETR; EZAZ, TARIQ; LIEHR, THOMAS; VIANA, PATRIK FERREIRA; et al. Interspecific Genetic Differences and Historical Demography in South American Arowanas (Osteoglossiformes, Osteoglossidae, Osteoglossum). GENES, v. 10, n. 9, SEP 2019. (18/22033-1, 17/10240-0)

WERNECK FELIX DA COSTA, GIDEAO WAGNER; CIOFFI, MARCELO DE BELLO; LIEHR, THOMAS; FELDBERG, ELIANA; CARLOS BERTOLLO, LUIZ ANTONIO; MOLINA, WAGNER FRANCO. Extensive Chromosomal Reorganization in Apistogramma Fishes (Cichlidae, Cichlinae) Fits the Complex Evolutionary Diversification of the Genus. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 20, n. 17, SEP 1 2019. (18/22033-1)

AL-RIKABI, AHMED B. HAMID; CIOFFI, MARCELO DE BELLO; LIEHR, THOMAS. Chromosome Microdissection on Semi-Archived Material. Cytometry Part A, v. 95, n. 12, p. 1285-1288, DEC 2019. (18/22033-1, 17/10240-0)

TOMA, GUSTAVO AKIRA; ROSA DE MORAES, RENATA LUIZA; CAVALCANTE SASSI, FRANCISCO DE MENEZES; CARLOS BERTOLLO, LUIZ ANTONIO; DE OLIVEIRA, EZEQUIEL AGUIAR; RAB, PETR; SEMBER, ALEXANDR; LIEHR, THOMAS; HATANAKA, TERUMI; VIANA, PATRIK FERREIRA; et al. Cytogenetics of the small-sized fish, Copeina guttata (Characiformes, Lebiasinidae): Novel insights into the karyotype differentiation of the family. PLoS One, v. 14, n. 12, DEC 19 2019. (18/22033-1, 18/24235-0, 17/09321-5)

SASSI, FRANCISCO DE M. C.; HATANAKA, TERUMI; DE MORAE, RENATA LUIZA R.; TOMA, GUSTAVO A.; DE OLIVEIRA, EZEQUIEL A.; LIEHR, THOMAS; RAB, PETR; BERTOLLO, LUIZ A. C.; VIANA, PATRIK F.; FELDBERG, ELIANA; et al. An Insight into the Chromosomal Evolution of Lebiasinidae (Teleostei, Characiformes). GENES, v. 11, n. 4, APR 2020. (17/09321-5, 18/22033-1, 18/24235-0)

SPANGENBERG, VICTOR; ARAKELYAN, MARINE; CIOFFI, MARCELO DE BELLO; LIEHR, THOMAS; AL-RIKABI, AHMED; MARTYNOVA, ELENA; DANIELYAN, FELIX; STEPANYAN, ILONA; GALOYAN, EDUARD; KOLOMIETS, OXANA. Cytogenetic mechanisms of unisexuality in rock lizards. SCIENTIFIC REPORTS, v. 10, n. 1, MAY 26 2020. (18/22033-1)

SEMBER, ALEXANDR; PELIKANOVA, SARKA; CIOFFI, MARCELO DE BELLO; SLECHTOVA, VENDULA; HATANAKA, TERUMI; DOAN, HIEP DO; KNYTL, MARTIN; RAB, PETR. Taxonomic Diversity Not Associated with Gross Karyotype Differentiation: The Case of Bighead Carps, GenusHypophthalmichthys(Teleostei, Cypriniformes, Xenocyprididae). GENES, v. 11, n. 5, MAY 2020. (18/22033-1)

CAVALCANTE SASSI, FRANCISCO DE MENEZES; DE OLIVEIRA, EZEQUIEL AGUIAR; CARLOS BERTOLLO, LUIZ ANTONIO; NIRCHIO, MAURO; HATANAKA, TERUMI; FERREIRA MARINHO, MANOELA MARIA; MOREIRA-FILHO, ORLANDO; AROUTIOUNIAN, ROUBEN; LIEHR, THOMAS; AL-RIKABI, AHMED B. H.; et al. Chromosomal Evolution and Evolutionary Relationships of Lebiasina Species (Characiformes, Lebiasinidae). INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 20, n. 12, JUN 2 2019. (17/09321-5, 18/22033-1, 18/24235-0)

XU, DONGDONG; SEMBER, ALEXANDR; ZHU, QIHUI; DE OLIVEIRA, EZEQUIEL AGUIAR; LIEHR, THOMAS; AL-RIKABI, AHMED B. H.; XIAO, ZHIZHONG; SONG, HONGBIN; CIOFFI, MARCELO DE BELLO. Deciphering the Origin and Evolution of the X1X2Y System in Two Closely-Related Oplegnathus Species (Oplegnathidae and Centrarchiformes). INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 20, n. 14, JUL 2 2019. (18/22033-1)

EZEQUIEL A. DE OLIVEIRA; FRANCISCO DE M. C. SASSI; MANOLO F. PEREZ; LUIZ A. C. BERTOLLO; PETR RÁB; TARIQ EZAZ; TERUMI HATANAKA; PATRIK F. VIANA; ELIANA FELDBERG; EDIVALDO H. C. DE OLIVEIRA; et al. Comparative cytogenetic survey of the giant bonytongue Arapaima fish (Osteoglossiformes: Arapaimidae), across different Amazonian and Tocantins/Araguaia River basins. Neotropical Ichthyology, v. 18, n. 4, 2020-11-16. (17/10240-0, 18/22033-1)

SPANGENBERG, VICTOR; KOLOMIETS, OXANA; STEPANYAN, ILONA; GALOYAN, EDUARD; CIOFFI, MARCELO DE BELLO; MARTYNOVA, ELENA; MARTIROSYAN, IRENA; GRISHAEVA, TATIANA; DANIELYAN, FELIX; AL-RIKABI, AHMED; et al. Evolution of the parthenogenetic rock lizard hybrid karyotype: Robertsonian translocation between two maternal chromosomes in Darevskia rostombekowi. CHROMOSOMA, v. 129, n. 3-4, p. 275-283, DEC 2020. (18/22033-1)

DITCHAROEN, SUKHONTHIP; CAVALCANTE SASSI, FRANCISCO DE MENEZES; CARLOS BERTOLLO, LUIZ ANTONIO; MOLINA, WAGNER FRANCO; LIEHR, THOMAS; SAENJUNDAENG, PASAKORN; TANOMTONG, ALONGKLOD; SUPIWONG, WEERAYUTH; SUWANNAPOOM, CHATMONGKON; CIOFFI, MARCELO DE BELLO. Comparative chromosomal mapping of microsatellite repeats reveals divergent patterns of accumulation in 12 Siluridae (Teleostei: Siluriformes) species. GENETICS AND MOLECULAR BIOLOGY, v. 43, n. 4, 2020. (18/22033-1)

SEMBER, ALEXANDR; NGUYEN, PETR; PEREZ, MANOLO F.; ALTMANOVA, MARIE; RAB, PETR; CIOFFI, MARCELO DE BELLO. Multiple sex chromosomes in teleost fishes from a cytogenetic perspective: state of the art and future challenges. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, v. 376, n. 1833, SEP 13 2021. (17/10240-0, 18/22033-1)

PASAKORN SAENJUNDAENG; WEERAYUTH SUPIWONG; FRANCISCO M. C. SASSI; LUIZ A. C. BERTOLLO; PETR RAB; RAFAEL KRETSCHMER; ALONGKLOD TANOMTONG; CHATMONGKON SUWANNAPOOM; MONTRI REUNGSING; MARCELO DE BELLO CIOFFI. Chromosomes of Asian cyprinid fishes: Variable karyotype patterns and evolutionary trends in the genus Osteochilus (Cyprinidae, Labeoninae, “Osteochilini”). GENETICS AND MOLECULAR BIOLOGY, v. 43, n. 4, 2020-11-06. (18/22033-1)

CIOFFI, MARCELO DE BELLO; RAB, PETR; EZAZ, TARIQ; CARLOS BERTOLLO, LUIZ ANTONIO; LAVOUE, SEBASTIEN; DE OLIVEIRA, EZEQUIEL AGUIAR; SEMBER, ALEXANDR; MOLINA, WAGNER FRANCO; SANTOS DE SOUZA, FERNANDO HENRIQUE; MAJTANOVA, ZUZANA; et al. Deciphering the Evolutionary History of Arowana Fishes (Teleostei, Osteoglossiformes, Osteoglossidae): Insight from Comparative Cytogenomics. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 20, n. 17, SEP 1 2019. (18/22033-1, 17/10240-0)

SAENJUNDAENG, PASAKORN; SUPIWONG, WEERAYUTH; SASSI, FRANCISCO M. C.; BERTOLLO, LUIZ A. C.; RAB, PETR; KRETSCHMER, RAFAEL; TANOMTONG, ALONGKLOD; SUWANNAPOOM, CHATMONGKON; REUNGSING, MONTRI; CIOFFI, MARCELO DE BELLO. Chromosomes of Asian cyprinid fishes: Variable karyotype patterns and evolutionary trends in the genus Osteochilus (Cyprinidae, Labeoninae, ``Osteochilini{''}). GENETICS AND MOLECULAR BIOLOGY, v. 43, n. 4, 2020. (18/22033-1)

DEON, GEIZE APARECIDA; GLUGOSKI, LARISSA; VICARI, MARCELO RICARDO; NOGAROTO, VIVIANE; SASSI, FRANCISCO DE MENEZES CAVALCANTE; CIOFFI, MARCELO DE BELLO; LIEHR, THOMAS; BERTOLLO, LUIZ ANTONIO CARLOS; MOREIRA-FILHO, ORLANDO. Highly Rearranged Karyotypes and Multiple Sex Chromosome Systems in Armored Catfishes from the Genus Harttia (Teleostei, Siluriformes). GENES, v. 11, n. 11, NOV 2020. (18/22033-1, 20/02681-9)

HAMID AL-RIKABI, AHMED B.; CIOFFI, MARCELO DE BELLO; LIEHR, THOMAS. Chromosome Microdissection on Semi-Archived Material. Cytometry Part A, SEP 2019. (18/22033-1, 17/10240-0)

OLIVEIRA, E. A.; PEREZ, M. F.; BERTOLLO, L. A. C.; GESTICH, C. C.; RAB, P.; EZAZ, T.; SOUZA, F. H. S.; VIANA, P.; FELDBERG, E.; OLIVEIRA, E. H. C.; et al. Historical demography and climate driven distributional changes in a widespread Neotropical freshwater species with high economic importance. ECOGRAPHY, v. 43, n. 9, JUN 2020. (18/22033-1, 17/10240-0)

SASSI, FRANCISCO DE M. C.; DEON, GEIZE A.; MOREIRA-FILHO, ORLANDO; VICARI, MARCELO R.; BERTOLLO, LUIZ A. C.; LIEHR, THOMAS; DE OLIVEIRA, EZEQUIEL AGUIAR; CIOFFI, MARCELO B.. Multiple Sex Chromosomes and Evolutionary Relationships in Amazonian Catfishes: The Outstanding Model of the Genus Harttia (Siluriformes: Loricariidae). GENES, v. 11, n. 10, OCT 2020. (18/22033-1, 20/02681-9)

DE M. C. SASSI, FRANCISCO; PEREZ, MANOLO F.; OLIVEIRA, VANESSA CRISTINA S.; DEON, GEIZE A.; DE SOUZA, FERNANDO H. S.; FERREIRA, PEDRO H. N.; DE OLIVEIRA, EZEQUIEL A.; HATANAKA, TERUMI; LIEHR, THOMAS; BERTOLLO, LUIZ A. C.; et al. High Genetic Diversity despite Conserved Karyotype Organization in the Giant Trahiras from Genus Hoplias (Characiformes, Erythrinidae). GENES, v. 12, n. 2, FEB 2021. (18/24235-0, 18/22033-1, 20/02681-9)

SPANGENBERG, VICTOR; ARAKELYAN, MARINE; GALOYAN, EDUARD; MARTIROSYAN, IRENA; BOGOMAZOVA, ALEXANDRA; MARTYNOVA, ELENA; DE BELLO CIOFFI, MARCELO; LIEHR, THOMAS; AL-RIKABI, AHMED; OSIPOV, FEDOR; et al. Meiotic synapsis of homeologous chromosomes and mismatch repair protein detection in the parthenogenetic rock lizard Darevskia unisexualis. Molecular Reproduction and Development, v. 88, n. 2, JAN 2021. (18/22033-1)

YANO, CASSIA F.; MERLO, MANUEL A.; PORTELA-BENS, SILVIA; CIOFFI, MARCELO DE B.; BERTOLLO, LUIZ A. C.; SANTOS-JUNIOR, CELIO D.; REBORDINOS, LAUREANA. Evolutionary Dynamics of Multigene Families in Triportheus (Characiformes, Triportheidae): A Transposon Mediated Mechanism?. FRONTIERS IN MARINE SCIENCE, v. 7, JAN 24 2020. (18/22033-1)

DITCHAROEN, SUKHONTHIP; CARLOS BERTOLLO, LUIZ ANTONIO; RAB, PETR; HNATKOVA, EVA; MOLINA, WAGNER FRANCO; LIEHR, THOMAS; TANOMTONG, ALONGKLOD; TRIANTAPHYLLIDIS, COSTAS; OZOUF-COSTAZ, CATHERINE; TONGNUNUI, SAMPAN; et al. Genomic Organization of Repetitive DNA Elements and Extensive Karyotype Diversity of Silurid Catfishes (Teleostei: Siluriformes): A Comparative Cytogenetic Approach. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 20, n. 14, JUL 2 2019. (18/22033-1)

OLIVEIRA, VANESSA C. S.; ALTMANOVA, MARIE; VIANA, PATRIK F.; EZAZ, TARIQ; BERTOLLO, LUIZ A. C.; RAB, PETR; LIEHR, THOMAS; AL-RIKABI, AHMED; FELDBERG, ELIANA; HATANAKA, TERUMI; et al. Revisiting the Karyotypes of Alligators and Caimans (Crocodylia, Alligatoridae) after a Half-Century Delay: Bridging the Gap in the Chromosomal Evolution of Reptiles. CELLS, v. 10, n. 6, JUN 2021. (18/22033-1)