Biotechnological strategies for genetic improvement of grasses for biofuel production

• Grant number: 19/04878-7
• Support Opportunities: Program for Research on Bioenergy (BIOEN) - Young Investigators Grants
• Start date: February 01, 2020
• End date: July 31, 2025
• Field of knowledge: Agronomical Sciences - Agronomy
• Principal Investigator: Wagner Rodrigo de Souza
• Grantee: Wagner Rodrigo de Souza
• Host Institution: Centro de Ciências Naturais e Humanas (CCNH). Universidade Federal do ABC (UFABC). Ministério da Educação (Brasil). Santo André , SP, Brazil
• Associated researchers: Danilo da Cruz Centeno ; Hugo Bruno Correa Molinari
• Associated scholarship(s): 23/05780-6 - Overexpression of xylan arabinosyltransferase genes to improve biomass digestibility in Setaria viridis, BP.DD; 22/03292-1 - Overexpression of xylan arabinosyltransferase genes to improve biomass digestibility in Setaria viridis, BP.MS; 19/26761-4 - Effects of genetic modifications in grass cell walls on biomass digestibility and abiotic stresses, BP.DR

Abstract

Biomass conversion is currently the most economically viable strategy for the production of liquid biofuels, as is the case with cellulosic ethanol. The complex network of polymers present in the cell wall of plant biomass decreases the fermentation of free sugars by yeasts and is a major bottleneck for biofuel production. In this context, the genetic modification of the plant cell wall represents a powerful tool to reduce biomass recalcitrance, increasing the viability of the biofuel production process. Here, we intend to compare three different strategies for cell wall modification, with the aim of decreasing recalcitrance and consequently increasing biomass digestibility. For these studies, it will be used the grass model plant Setaria viridis, a species phylogenetically related to sugarcane, a crop that is broadly used for ethanol production. Using CRISPR/Cas9 technology, the COMT and BAHD genes, responsible for the incorporation of lignin and ferulate into the cell wall, respectively, will be edited. In addition, the gene XAT, responsible for the incorporation of arabinose residues in the side chains of the hemicellulosic fraction of the cell wall, will be overexpressed. After genetic modification, the cell wall and the biomass of the modified plants will be characterized in detail, to verify the mechanisms by which genetic modifications increase biomass digestibility. These results will help to further design a rational strategy for the development of genetically modified sugarcane with increased potential for bioethanol production. In this project, it is also intended to establish a protocol for the genetic editing of Setaria viridis through the production of CRISPR/Cas9 ribonucleoproteins, generating non-transgenic plants, in order to apply this technique in sugarcane in the future. (AU)

Scientific publications

(5)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

BASSO, MARCOS FERNANDO; DUARTE, KAROLINE ESTEFANI; SANTIAGO, THAIS RIBEIRO; DE SOUZA, WAGNER RODRIGO; GARCIA, BRUNO DE OLIVEIRA; BRITO DA CUNHA, BARBARA DIAS; KOBAYASHI, ADILSON KENJI; CORREA MOLINARI, HUGO BRUNO. Efficient genome editing and gene knockout in Setaria viridis with CRISPR/Cas9 directed gene editing by the non-homologous end-joining pathway. PLANT BIOTECHNOLOGY, v. 38, n. 2, p. 227-238, JUN 2021. (19/04878-7)

RIBEIRO, ANA PAULA; VINECKY, FELIPE; DUARTE, KAROLINE ESTEFANI; SANTIAGO, THAIS RIBEIRO; DAS CHAGAS NOQUELI CASARI, RAPHAEL AUGUSTO; HELL, ALINE FORGATTI; DIAS BRITO DA CUNHA, BARBARA ANDRADE; MARTINS, POLYANA KELLY; CENTENO, DANILO DA CRUZ; DE OLIVEIRA MOLINARI, PATRICIA ABRAO; et al. Enhanced aluminum tolerance in sugarcane: evaluation of SbMATE overexpression and genome-wide identification of ALMTs in Saccharum spp.. BMC PLANT BIOLOGY, v. 21, n. 1, JUN 29 2021. (19/16226-4, 18/15576-9, 19/04878-7)

DUARTE, KAROLINE ESTEFANI; BASSO, MARCOS FERNANDO; DE OLIVEIRA, NELSON GERALDO; FERREIRA DA SILVA, JOSE CLEYDSON; GARCIA, BRUNO DE OLIVEIRA; DIAS BRITO CUNHA, BARBARA ANDRADE; CARDOSO, THIAGO BERGAMO; NEPOMUCENO, ALEXANDRE LIMA; KOBAYASHI, ADILSON KENJI; SANTIAGO, THAIS RIBEIRO; et al. MicroRNAs expression profiles in early responses to different levels of water deficit in Setaria viridis. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, v. 28, n. 8, p. 18-pg., 2022-09-28. (19/04878-7, 19/16226-4)

CHANDRAKANTH, NIHARIKA NONAVINAKERE; ZHANG, CHENGCHENG; FREEMAN, JACKIE; DE SOUZA, WAGNER RODRIGO; BARTLEY, LAURA E. E.; MITCHELL, ROWAN A. C.. Modification of plant cell walls with hydroxycinnamic acids by BAHD acyltransferases. FRONTIERS IN PLANT SCIENCE, v. 13, p. 15-pg., 2023-01-17. (19/04878-7)

DE SOUZA, WAGNER RODRIGO; MITCHELL, ROWAN A. C.; CESARINO, IGOR. The plant cell wall: advances and current perspectives. FRONTIERS IN PLANT SCIENCE, v. 14, p. 3-pg., 2023-06-22. (19/04878-7, 21/06142-8)