CCES - Center for Computational Engineering and Sciences

• Grant number: 13/08293-7
• Support Opportunities: Research Grants - Research, Innovation and Dissemination Centers - RIDC
• Start date: June 01, 2013
• End date: May 31, 2026
• Field of knowledge: Interdisciplinary Subjects - Chemistry - Physical-Chemistry
• Principal Investigator: Munir Salomao Skaf
• Grantee: Munir Salomao Skaf
• Host Institution: Instituto de Química (IQ). Universidade Estadual de Campinas (UNICAMP). Campinas , SP, Brazil
• Pesquisadores principais: Claudia Maria Bauzer Medeiros ; Douglas Soares Galvão ; Edson Borin ; Euclides de Mesquita Neto ; Guido Costa Souza de Araújo ; Leandro Martinez ; Martin Tygel ; Paulo Sollero ; Renato Pavanello ; Rodolfo Jardim de Azevedo ; William Roberto Wolf
• Associated researchers: Alex Antonelli ; Daniel Laria ; Dario Estrin ; Gonçalo Amarante Guimarães Pereira ; Guilherme Pimentel Telles ; Julio Cesar dos Reis ; Marcelo Falsarella Carazzolle ; Martin Schanz ; Maurice de Koning ; Nelson Henrique Morgon ; Peter Jacob Rossky ; Rogério Custodio ; Sandra Eliza Fontes de Avila ; Vera Nisaka Solferini ; Victor Salvador Batista ; Zanoni Dias
• Associated research grant(s): 24/02253-8 - Exploration of Unique Bi-Dimensional Architectures: Unveiling Structural, Mechanical, and Transport Characteristics Beyond the Scope of van der Waals solids, AP.R; 23/03748-8 - DEVELOPMENTS AND APPLICATIONS OF COMPUTATIONAL METHODS TO SIMULATE SOFT MATTER, AV.EXT; 19/17874-0 - Multi-user Equipmente approved in grant 2013/08293-7, KAHUNA upgrade - HPE Apollo Gen10 supercomputer, AP.EMU; + associated grants 19/07470-9 - Geo-spatial processing of IoT streams in digital agriculture: the case for actor database systems, AP.R SPRINT; 17/50155-1 - Textured nanostructured based devices for energy and sensing applications, AP.R SPRINT; 17/11538-2 - Multi-scale modeling of carbon nanotube based artificial muscles, AV.BR; 13/50376-7 - Applying speculative parallelism and feedback-directed optimization to improve performance, AP.R; 13/50381-0 - In silico screening and understanding of advanced nano-materials for molecular capture related to clean energy applications, AP.R - associated grants
• Associated scholarship(s): 25/11743-1 - Computational studies of plant cells wall and other carbohydrate-based systems, BP.DR; 25/03933-5 - Effects of sugar-derivatives concentration in the interactions between substrate and carbohydrate-active enzymes, BP.PD; 25/03946-0 - Cellulose Nanofibrillation in Mixed Solvents, BP.PD; + associated scholarships 24/23613-2 - Molecular modeling of cellulose nanofibrilation in different solvents, BP.MS; 25/00406-4 - Efficient Code Generation for Deep Learning Models in Scientific Computing, BP.DR; 24/20547-9 - A study of supersonic boundary layers developing under streamwise curvature and pressure gradients, BP.DR; 24/19027-0 - Molecular Modeling of Enzymatic Degradation of Microbial Biofilm Exopolysaccharides, BP.DR; 24/21444-9 - Neural networks for flow modeling, analysis, and control: bridging the gap between simulations, and experiments, BP.PD; 24/21870-8 - Multi-scale Modeling of Hydrogen Storage in Metal-Organic Frameworks (MOFs), BP.PD; 24/20300-3 - Molecular Modeling of Macromolecular Systems of Biotechnological Interest, BP.PD; 24/03355-9 - Simulations of Plasmodium falciparum surface proteins in biocompatible ionic liquids as vaccine adjuvants, BP.DR; 23/15458-4 - Enhancing Scientific Computation with Machine Learning: Innovations and Breakthroughs in Complex Systems Analysis, BP.PD; 23/14353-4 - Soft material distributions in highly complex viral systems, BP.PD; 23/12787-7 - Development and Implementation of Machine Learning Strategies for Problem Solving in Science and Engineering, BP.TT; 23/12226-5 - Investigation of Turbulent Compressible Flows Past Airfoils Using High-Resolution Simulations, BP.PD; 23/13899-3 - Dimerization mechanism and associated solvation effects in non-structural protein 9 (NSP9) of coronavirus, BP.PD; 23/05939-5 - Multimodal Embedding Space for Text-Guided Data Generation, BP.DR; 22/14690-8 - Few-Shot Scene Recognition, a New Proxy Task for Child Sexual Abuse Material Detection, BP.PD; 23/03308-8 - Computational study of secondary structure stability of peptide in solvents mixtures, BP.IC; 23/03328-9 - Machine Learning Under The Hood: Efficient Accelerators for Deep Networks and its Applicability in Scientific Computation, BP.DR; 22/09196-4 - Improving the understanding of unsteady aerodynamic flows via high-fidelity simulations, analytical modeling and deep learning techniques, BP.PD; 22/07372-0 - Molecular modeling of enzymes active on lignocellulosic substrates, BP.DR; 22/04810-6 - Computational investigation of Glycoside Hydrolases (GHs) structural dynamics and stability in the presence of industrially relevant co-solvents, BP.PD; 22/04695-2 - Reaction mechanisms of enzymes and catalytic enhancement based on transition states and machine learning algorithms, BP.PD; 22/04703-5 - Molecular dynamics simulations of enzymes of biotechnological interest, BP.PD; 21/02493-0 - Diurnal variation of transcripts and metabolites of sugarcane and energy-cane: an integrated analysis of transcriptomics and metabolomics, BP.DR; 22/00464-6 - High-fidelity simulations and data-driven analysis of transitional and turbulent compressible flows over airfoils, BP.DR; 21/06415-4 - Design of FPGA accelerators for applications in Engineering and Sciences, BP.PD; 22/00256-4 - Statistics of turbulent boundary layers developing under different pressure gradients, BP.MS; 21/09355-2 - Providing fault tolerance for OpenMP target-based applications, BP.DR; 21/03224-3 - High-performance computing and molecular dynamics, BP.PD; 20/07391-9 - Topology optimization of piezoelectric devices using piezocomposite metamaterials, BP.DR; 20/08475-1 - Increasing efficiency of task parallelism in GPU clusters for scientific workloads, BP.DR; 19/19619-7 - Generating unlimited skin lesion images with generative adversarial networks, BP.DR; 20/04549-0 - Solvent effects on protein folding thermodynamics, BP.DR; 20/04916-3 - Effects of common ion and multiple electrolytes on the protein solvation by ionic liquids, BP.DR; 19/19389-1 - Semantic interoperability of scientific datasets, BP.PD; 19/26196-5 - Large-eddy simulations of supersonic axial turbines, BP.DR; 19/19662-0 - Mesoscopic architecture of lignocellulosic fibers, BP.PD; 19/25588-7 - Multiscale modeling and optimization of additively manufactured composite bone implants using the boundary element method and molecular dynamics, BP.DR; 19/12914-3 - Integrated multi-omics analysis and metabolic network simulations applied to Saccharomyces cerevisiae for second generation ethanol production, BP.PD; 19/24041-4 - #PraCegoVer: automatic image audiodescription, BP.IC; 19/15018-9 - Multi-scale modeling of carbon nanotube-based artificial muscles, BP.PD; 19/19237-7 - Exploring the potentialities of artificial neural networks on metamaterials topological design, BP.DR; 19/15105-9 - Multi-scale Modeling of Hydrogen Storage in Metal-Organic Frameworks (MOFs), BP.PD; 19/17007-4 - Protein modeling of enzymes and complexes associated with the degradation of cellulose, BP.PD; 19/19179-7 - Flow control strategies for unsteady flows involving transition and turbulence, BP.DR; 19/17350-0 - Molecular modeling of carbohydrate-modifying enzymes, BP.DR; 19/17371-8 - Molecular dynamics of enzymes for glycan saccharification, BP.DR; 19/12792-5 - Algorithms, methods and tools to migrate high-performance computing science and engineering applications to the cloud, BP.PD; 19/17373-0 - Computational studies of carbohydrate-active enzymes and cellulose interactions with matrix compounds in plant cell walls, BP.DR; 19/12783-6 - Efficient migration of high-performance computing science and engineering applications to the cloud, BP.DR; 19/05393-7 - Maximization of natural frequencies and frequency gaps of continuum structures by an evolutionary topology optimization method, BP.DD; 19/04536-9 - Improving performance of collision cross section calculation through component annotation, BP.DR; 18/11352-9 - Structural, mechanical and transport properties of schwartzites, BP.DR; 18/13262-7 - Computational study of the solvation of carbohydrates using minimum-distance distribution functions, BP.IC; 18/00075-4 - Topology optimization of periodic piezoelectric materials for energy harvesting devices, BP.MS; 17/18512-9 - Free energy landscape for adsorption of gases on metal-organic frameworks (MOFs) and other complex nanostructures, BP.PD; 17/24003-0 - Quality annotations for execution of experiments based on workflows, BP.IC; 17/05814-7 - Nanoreptation: a study by molecular dynamics, BP.IC; 17/15236-0 - An Architecture for FPGA Acceleration of Stochastic Programming Algorithms, BP.DR; 17/05822-0 - Design of bidimensional carbon and nitrogen-based structures using genetic algorithms, BP.IC; 16/23477-5 - Quaternary states of CBM64 and its interaction with Polisaccharide substrates, BP.PD; 16/18499-0 - Investigation on the structural, mechanical and functional properties of carbon-based nanostructures, BP.PD; 15/26434-2 - Study of the electronic, structural, and transport properties of materials for thermoelectric applications via ab initio calculations, BP.PD; 16/19115-0 - 2D and 3D tomographic methods based on CRS parameters., BP.DR; 16/15337-9 - Distributed Transactional Memories and Efficient Data Distribution Models to Speed-up Irregular Data Structure Intensive Applications, BP.DR; 16/04829-8 - Computational simulation and modeling of carbohydrate modifying enzymes, support proteins and lignocellulosic substrates, BP.PD; 16/02086-8 - Structural, mechanical and thermal properties of nanofoams, BP.IC; 16/04963-6 - Molecular dynamics of cellulose enzymatic hydrolysis and QM / MM simulations of chemical reactions in biomolecular systems, BP.PD; 15/25031-1 - Molecular Dynamics of Carbohydrate Modifying Enzymes for Lignocellulosic Biomass Deconstruction and Valorization, BP.DR; 15/13667-9 - Studies of multimeric protein systems through cross-linking, mass spectrometry and molecular modeling, BP.PD; 15/14703-9 - Theoretical study on the structural and mechanical properties of MOFs (metal-organic frameworks), BP.PD; 15/18607-4 - Structural topological optimization applied to multiphysics problems considering porous materials, BP.PD; 15/03155-0 - Properties of functionalized biphenylene membranes, BP.IC; 14/25694-8 - Loop and task parallelization using cloud clusters map-reduce for scientific workloads, BP.PD; 14/07502-4 - An educational methodology for promoting active learning through a dynamic content classroom, BP.PD; 14/24547-1 - Theoretical investigations on growth and fracture mechanisms of graphene-based nanostructures, BP.PD; 14/23861-4 - Modeling data through different science experiments using scientific workflow and ontologies, BP.DR; 14/17925-0 - Efficient software runtime environments for universal memory architectures, BP.PD; 14/12833-0 - Molecular dynamics of cellulose enzymatic hydrolysis and other studies by QM/MM of chemical reactions in biomolecular systems, BP.PD; 14/10448-1 - Molecular aspects of plant cell wall architecture, BP.PD; 14/09638-0 - Assemblage and comparative analysis of phytopathogenic fungi genomes of Moniliophthora (Agaricales, Basidiomycota) obtained by large-scale sequencing using high-performance computational methods, BP.PD; 14/03840-2 - Architectural support for programs speculative execution, BP.PD; 13/22360-9 - Computational Study of the mechanism of conversion of ATP to cyclic-AMP catalyzed by the Edema Factor of Anthrax, BP.PD; 13/24500-2 - Structural and Dynamical Properties of Nanodroplets, BP.DR; 13/25979-0 - Structural, mechanical and transport properties of Graphyne-Based nanostructures, BP.PD; 13/23804-8 - Theoretical Investigations on Growth and Fracture Mechanisms of Graphene-based Nanostructures, BP.PD; 13/13808-6 - Investigation on the Structural, Mechanical and Functional Properties of Carbon-based Nanostructures, BP.PD; 13/15582-5 - Multiscale molecular dynamics of glycoside hydrolases and lignocellulosic substrates, BP.PD; 13/17468-5 - Design of Smart Surfaces With Tunable Wetting Behavior, BP.DR; 11/13259-7 - Structural, mechanical and transport properties of graphene and related structures, BP.PD - associated scholarships

Abstract

We propose the creation of a world-class multidisciplinary center dedicated to the development and application of advanced computational modeling techniques for the purpose of meeting the challenges in frontier problems in computational engineering and sciences, and promote substantial advancements in technological innovation, education and dissemination of knowledge in the broader area of e-Science. The "Center for Computational Engineering and Sciences" will be established at the University of Campinas in its own building which will be constructed with funds recently approved by the Brazilian Agency FINEP, complemented with funds from Unicamp, totaling R$ 6.634.400,00 (US$ 3.7 Mi).The facility will have an auditorium with 160 seats, offices, working spaces, and computer rooms adequate for high performance servers and clusters. The Center is being proposed by highly qualified scientists from the institutes of Biology, Computer Science. Physics, Mathematics. Chemistry, and School of Mechanical Engineering at Unicamp, and finds it’s unifying scientific focus in the field of computational modeling and high performance computing. Five highly distinguished scientists from the University of Texas and Vale, in the United States, University of Graz, Austria, and the University of Buenos Aires, Argentina, also participate in the proposal. The Center will constitute a unified venue of excellence, first of its kind in Brazil in which our current expertise in the areas of simulations and computer modeling in general can be multiplied by means of the close interaction among the participants. We expect to be able to address and solve a variety of problems at the forefront of science. Including nanomaterial, complex bimolecular systems of interest to human health and bioenergy, bioinformatics, particulate materials, porous and continuum media, and computational geophysics, which all involve the development of advanced techniques in parallelism extraction and multi-core architectures. The Center is expected to promote and create the means for a stronger interaction between academia and industry and the dissemination of knowledge and education through its Technology Transfer and Dissemination cores. (AU)

Scientific publications

(709)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

DE SOUSA, J. M.; BRUNETTO, G.; COLUCI, V. R.; GALVAO, D. S.. Torsional ``superplasticity{''} of graphyne nanotubes. Carbon, v. 96, p. 14-19, JAN 2016. (13/08293-7)

BAUDET, CHRISTIAN; DIAS, ULISSES; DIAS, ZANONI. Sorting by weighted inversions considering length and symmetry. BMC Bioinformatics, v. 16, n. 19, DEC 16 2015. (13/08293-7, 14/19401-8, 12/01584-3)

JAQUES, YGOR M.; GALVAO, DOUGLAS S.. Permeation of Water Nanodroplets on Carbon Nanotubes Forests. MRS ADVANCES, v. 2, n. 2, p. 123-128, 2017. (13/08293-7)

OIKAWA, MARINA A.; DIAS, ZANONI; ROCHA, ANDERSON; GOLDENSTEIN, SIOME. Distances in multimedia phylogeny. International Transactions in Operational Research, v. 23, n. 5, SI, p. 921-946, SEP 2016. (14/19401-8, 14/03535-5, 13/08293-7)

ROUT, ARPAN; PANDEY, PRAFULL; OLIVEIRA, ELIEZER FERNANDO; DA SILVA AUTRETO, PEDRO ALVES; GUMASTE, ANURAG; SINGH, AMIT; GALVAO, DOUGLAS SOARES; ARORA, AMIT; TIWARY, CHANDRA SEKHAR. Atomically locked interfaces of metal (Aluminum) and polymer (Polypropylene) using mechanical friction. Polymer, v. 169, n. SI, p. 148-153, APR 15 2019. (13/08293-7, 16/18499-0)

ROMANINI, E.; LABAKI, J.; MESQUITA, E.; SILVA, R. C.. Stationary Dynamic Stress Solutions for a Rectangular Load Applied within a 3D Viscoelastic Isotropic Full-Space. MATHEMATICAL PROBLEMS IN ENGINEERING, 2019. (13/08293-7, 17/01450-0)

DE SOUSA, J. M.; WOELLNER, C. F.; MACHADO, L. D.; AUTRETO, P. A. S.; GALVAO, D. S.. Carbon Nanotube Peapods Under High-Strain Rate Conditions: A Molecular Dynamics Investigation. MRS ADVANCES, v. 5, n. 33-34, SI, p. 1723-1730, 2020. (13/08293-7)

DE SOUSA, J. M.; BOTARI, T.; PERIM, E.; BIZAO, R. A.; GALVAO, DOUGLAS S.. Mechanical and structural properties of graphene-like carbon nitride sheets. RSC ADVANCES, v. 6, n. 80, p. 76915-76921, 2016. (13/08293-7)

MARTINEZ, LEANDRO. MEASURING THE CONDUCTIVITY OF VERY DILUTE ELECTROLYTE SOLUTIONS, DROP BY DROP. Química Nova, v. 41, n. 7, p. 814-817, JUL 2018. (13/05475-7, 10/16947-9, 13/08293-7)

LUCCA TOSI, MAURO DALLE; DOS REIS, JULIO CESAR. nderstanding the evolution of a scientific field by clustering and visualizing knowledge graph. JOURNAL OF INFORMATION SCIENCE, v. 48, n. 1, JUL 2020. (17/02325-5, 13/08293-7)

SIQUEIRA, TAYANE HONORATO; MARTINEZ, LEANDRO. Molecular simulations of fluconazole-mediated inhibition of sterol biosynthesis. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, MAY 2019. (10/16947-9, 13/08293-7)

MARTINS DO ROSARIO, VANDERSON; FAUSTINO DA SILVA, ANDERSON; APARECIDA SILVA CAMACHO, THAIS; NAPOLI, OTAVIO O.; BRETERNITZ, MAURICIO; BORIN, EDSON. Smart selection of optimizations in dynamic compilers. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, NOV 2020. (13/08293-7)

MOREIRA, FARNEY COUTINHO; WOLF, WILLIAM ROBERTO; AZEVEDO, JOAO LUIZ F.. Thermal analysis of hypersonic flows of carbon dioxide and air in thermodynamic non-equilibrium. INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER, v. 165, n. A, FEB 2021. (13/07375-0, 13/08293-7)

GALVIS, ANDRES F.; PRADA, DANIEL M.; MOURA, LUCAS S.; ZAVAGLIA, CECILIA; FOSTER, JAMIE M.; SOLLERO, PAULO; WROBEL, LUIZ C.. ESLE: Boundary element software for 3D linear elasticit. COMPUTER PHYSICS COMMUNICATIONS, v. 265, AUG 2021. (13/08293-7)

OLIVEIRA, ELIEZER FERNANDO; BATAGIN-NETO, AUGUSTO; GALVAO, DOUGLAS SOARES. On the sulfur doping of gamma-graphdiyne: A Molecular Dynamics and DFT study. MRS ADVANCES, v. 5, n. 52-53, SI, p. 2701-2706, 2020. (19/07157-9, 13/08293-7, 16/18499-0)

LASCANE, LEONARDO GOIS; OLIVEIRA, ELIEZER FERNANDO; BATAGIN-NETO, AUGUSTO. Polyfuran-based chemical sensors: reactivity analysis via Fukui indexes and reactive molecular dynamics. MRS ADVANCES, v. 5, n. 10, SI, p. 497-503, 2020. (16/18499-0, 13/08293-7, 16/11358-1, 19/07157-9)

PERIM, E.; AUTRETO, P. A. S.; PAUPITZ, R.; GALVAO, D. S.. Dynamical aspects of the unzipping of multiwalled boron nitride nanotubes. Physical Chemistry Chemical Physics, v. 15, n. 44, p. 19147-19150, 2013. (13/08293-7, 11/17253-3)

PEREIRA, DOUGLAS HENRIQUE; DUCATI, LUCAS COLUCCI; RITTNER, ROBERTO; CUSTODIO, ROGERIO. A study of the rotational barriers for some organic compounds using the G3 and G3CEP theories. Journal of Molecular Modeling, v. 20, n. 4, APR 2014. (13/08293-7)

MARONEZE, CAMILA M.; RAHIM, ABDUR; FATTORI, NATALIA; DA COSTA, LUIZ P.; SIGOLI, FERNANDO A.; MAZALI, ITALO O.; CUSTODIO, ROGERIO; GUSHIKEM, YOSHITAKA. Electroactive Properties of 1-propyl-3-methylimidazolium Ionic Liquid Covalently Bonded on Mesoporous Silica Surface: Development of an Electrochemical Sensor Probed for NADH, Dopamine and Uric Acid Detection. Electrochimica Acta, v. 123, p. 435-440, MAR 20 2014. (13/08293-7)

CAJAHUARINGA, SAMUEL; DE KONING, MAURICE; ANTONELLI, ALEX. Revisiting dynamics near a liquid-liquid phase transition in Si and Ga: The fragile-to-strong transition. Journal of Chemical Physics, v. 139, n. 22, DEC 14 2013. (13/08293-7)

ROMERO ROCHA, CARLOS MURILO; PEREIRA, DOUGLAS HENRIQUE; MORGON, NELSON HENRIQUE; CUSTODIO, ROGERIO. Assessment of G3(MP2)//B3 theory including a pseudopotential for molecules containing first-, second-, and third-row representative elements. Journal of Chemical Physics, v. 139, n. 18, NOV 14 2013. (13/08293-7)

OZDEN, SEHMUS; AUTRETO, PEDRO A. S.; TIWARY, CHANDRA SEKHAR; KHATIWADA, SUMAN; MACHADO, LEONARDO; GALVAO, DOUGLAS S.; VAJTAI, ROBERT; BARRERA, ENRIQUE V.; AJAYAN, PULICKEL M.. Unzipping Carbon Nanotubes at High Impact. Nano Letters, v. 14, n. 7, p. 4131-4137, JUL 2014. (13/08293-7)

PERIM, ERIC; GALVAO, DOUGLAS S.. Novel Nanoscroll Structures from Carbon Nitride Layers. ChemPhysChem, v. 15, n. 11, p. 2367-2371, AUG 4 2014. (13/08293-7)

BUSSE-WICHER, MARTA; GOMES, THIAGO C. F.; TRYFONA, THEODORA; NIKOLOVSKI, NINO; STOTT, KATHERINE; GRANTHAM, NICHOLAS J.; BOLAM, DAVID N.; SKAF, MUNIR S.; DUPREE, PAUL. The pattern of xylan acetylation suggests xylan may interact with cellulose microfibrils as a twofold helical screw in the secondary plant cell wall of Arabidopsis thaliana. Plant Journal, v. 79, n. 3, p. 492-506, AUG 2014. (13/08293-7)

AUTRETO, P. A. S.; DE SOUSA, J. M.; GALVAO, D. S.. Site-dependent hydrogenation on graphdiyne. Carbon, v. 77, p. 829-834, OCT 2014. (13/08293-7)

SPERA, MARCELLE B. M.; FRANCO, LUIS F. M.. Surface and confinement effects on the self-diffusion coefficients for methane-ethane mixtures within calcite nanopores. Fluid Phase Equilibria, v. 522, NOV 1 2020. (13/08293-7, 18/02713-8)

SALGADO-ROA, FABIAN C.; PARDO-DIAZ, CAROLINA; LASSO, ELOISA; ARIAS, CARLOS F.; SOLFERINI, VERA NISAKA; SALAZAR, CAMILO. Gene flow and Andean uplift shape the diversification of Gasteracantha cancriformis (Araneae: Araneidae) in Northern South America. ECOLOGY AND EVOLUTION, v. 8, n. 14, p. 7131-7142, JUL 2018. (13/08293-7, 12/02526-7)

OLIVEIRA, ELIEZER F.; AUTRETO, PEDRO A. S.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.. Mechanical Properties of Protomene: A Molecular Dynamics Investigation. MRS ADVANCES, v. 4, n. 3-4, p. 191-196, 2019. (13/08293-7, 16/18499-0)

CHIPARA, ALIN CRISTIAN; OWUOR, PETER SAMORA; BHOWMICK, SANJIT; BRUNETTO, GUSTAVO; ASIF, S. A. SYED; CHIPARA, MIRCEA; VAJTAI, ROBERT; LOU, JUN; GALVAO, DOUGLAS S.; TIWARY, CHANDRA SEKHAR; et al. Structural Reinforcement through Liquid Encapsulation. ADVANCED MATERIALS INTERFACES, v. 4, n. 2, JAN 23 2017. (13/08293-7)

ROUT, ARPAN; GUMASTE, ANURAG; PANDEY, PRAFUL; OLIVEIRA, ELIEZER FERNANDO; DEMISS, SOLOMON; MAHESH, VAIKKARA PURUSHOTHAMAN; BHATT, CHINTAN; RAPHAEL, KIRAN; AYYAGARI, RAVI SASTRI; AUTRETO, PEDRO A. S.; et al. Bioinspired Aluminum Composite Reinforced with Soft Polymers with Enhanced Strength and Plasticity. ADVANCED ENGINEERING MATERIALS, v. 22, n. 3, JAN 2020. (16/18499-0, 13/08293-7, 19/07157-9)

YADAV, THAKUR PRASAD; WOELLNER, CRISTIANO F.; SHARIFI, TIVA; SINHA, SHYAM KANTA; QU, LU-LU; APTE, AMEY; MUKHOPADHYAY, N. K.; SRIVASTAVA, O. N.; VAJTAI, ROBERT; GALVAO, DOUGLAS SOARES; et al. Extraction of Two-Dimensional Aluminum Alloys from Decagonal Quasicrystals. ACS NANO, v. 14, n. 6, p. 7435-7443, JUN 23 2020. (13/08293-7)

SOUSA, IRAN L.; PORTO, CAIO M.; BASSANI, KATIA C.; MARTINS, MILENE H.; PESSINE, FRANCISCO B. T.; MORGON, NELSON H.. Preparation and Characterization of the beta-Cyclodextrin Inclusion Complex with Benzbromarone. Journal of the Brazilian Chemical Society, v. 31, n. 8, p. 1585-1596, AUG 2020. (13/08293-7)

CHIPARA, ALIN CRISTIAN; BRUNETTO, GUSTAVO; OZDEN, SEHMUS; HASPEL, HENRIK; KUMBHAKAR, PARTHA; KUKOVECZ, AKOS; KONYA, ZOLTAN; VAJTAI, ROBERT; CHIPARA, MIRCEA; GALVAO, DOUGLAS S.; et al. Nature inspired solid-liquid phase amphibious adhesive. SOFT MATTER, v. 16, n. 25, p. 5854-5860, JUL 7 2020. (13/08293-7)

FELIX, LEVI C.; TROMER, RAPHAEL M.; AUTRETO, PEDRO A. S.; RIBEIRO JUNIOR, LUIZ A.; GALVAO, DOUGLAS S.. On the Mechanical Properties and Thermal Stability of a Recently Synthesized Monolayer Amorphous Carbon. Journal of Physical Chemistry C, v. 124, n. 27, p. 14855-14860, JUL 9 2020. (13/08293-7)

NAGAMATSU, SHEILA TIEMI; COUTOUNE, NATALIA; JOSE, JULIANA; FIAMENGHI, MATEUS BERNABE; GUIMARAES PEREIRA, GONCALO AMARANTE; DE CASTRO OLIVEIRA, JULIANA VELASCO; CARAZZOLLE, MARCELO FALSARELLA. Ethanol production process driving changes on industrial strains. FEMS Yeast Research, v. 21, n. 1, FEB 2021. (17/02124-0, 13/08293-7, 18/06254-8, 14/26905-2)

BRANDAO, W. H. S.; AGUIAR, A. L.; RIBEIRO, L. A.; GALVAO, D. S.; DE SOUSA, J. M.. On the Mechanical Properties of Popgraphene-Based Nanotubes: a Reactive Molecular Dynamics Study. ChemPhysChem, v. 22, n. 7, MAR 2021. (13/08293-7)

TROMER, RAPHAEL M.; FELIX, LEVI C.; RIBEIRO, LUIZ A.; GALVAO, DOUGLAS S.. Optoelectronic properties of amorphous carbon-based nanotube and nanoscroll. PHYSICA E-LOW-DIMENSIONAL SYSTEMS & NANOSTRUCTURES, v. 130, JUN 2021. (13/08293-7)

TROMER, RAPHAEL M.; MACHADO, LEONARDO D.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.. Thiophene-Tetrathia-Annulene monolayer (TTA-2D): A new 2D semiconductor material with indirect bandgap. PHYSICA E-LOW-DIMENSIONAL SYSTEMS & NANOSTRUCTURES, v. 129, MAY 2021. (13/08293-7)

ZUCATTI, VICTOR; WOLF, WILLIAM; BERGMANN, MICHEL. Calibration of projection-based reduced-order models for unsteady compressible flows. Journal of Computational Physics, v. 433, MAY 15 2021. (19/18809-7, 13/08293-7, 18/11410-9)

ORENHA, RENATO PEREIRA; MORGON, NELSON HENRIQUE; SILVA, GRAZIELE CAPPATO GUERRA; CARAMORI, GIOVANNI FINOTO; PARREIRA, RENATO LUIS TAME. The pi-donor/acceptor trans effect on NO release in ruthenium nitrosyl complexes: a computational insight. NEW JOURNAL OF CHEMISTRY, v. 45, n. 20, APR 2021. (11/07623-8, 17/24856-2, 19/00543-0, 13/08293-7, 15/22338-9)

PATINO-NARINO, EDGAR A.; GALVIS, ANDRES F.; PAVANELLO, RENATO; MOSHKALEV, STANISLAV A.. Numerical study of single bubble rising dynamics for the variability of moderate Reynolds and sidewalls influence: A bi-phase SPH approach. Engineering Analysis with Boundary Elements, v. 129, p. 1-26, AUG 1 2021. (13/08293-7)

FERREIRA COSTA, ADAO MARCOS; DE AGUIAR FILHO, SILVIO QUINTINO; SANTOS, THIFANY JUSTO; PEREIRA, DOUGLAS HENRIQUE. Theoretical insights about the possibility of removing Pb2+ and Hg2+ metal ions using adsorptive processes and matrices of carboxymethyl diethylaminoethyl cellulose and cellulose nitrate biopolymers. JOURNAL OF MOLECULAR LIQUIDS, v. 331, JUN 1 2021. (17/11485-6, 13/08293-7)

ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; JEAN, GERALDINE; FERTIN, GUILLAUME; DIAS, ULISSES; DIAS, ZANONI; BANSAL, MS; CAI, Z; MANGUL, S. Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. BIOINFORMATICS RESEARCH AND APPLICATIONS, ISBRA 2022, v. 13760, p. 14-pg., 2022-01-01. (19/27331-3, 15/11937-9, 13/08293-7)

DOS SANTOS, GABRIEL OLIVEIRA; COLOMBINI, ESTHER LUNA; AVILA, SANDRA. #PraCegoVer: A Large Dataset for Image Captioning in Portuguese. DATA, v. 7, n. 2, p. 27-pg., 2022-02-01. (19/24041-4, 13/08293-7)

BRITO, KLAIRTON LIMA; OLIVEIRA, ANDRE RODRIGUES; ALEXANDRINO, ALEXSANDRO OLIVEIRA; DIAS, ULISSES; DIAS, ZANONI; FERREIRA, CE; LEE, O; MIYAZAWA, FK. Reversal and Transposition Distance of Genomes Considering Flexible Intergenic Regions. PROCEEDINGS OF THE XI LATIN AND AMERICAN ALGORITHMS, GRAPHS AND OPTIMIZATION SYMPOSIUM, v. 195, p. 9-pg., 2021-01-01. (17/12646-3, 19/27331-3, 15/11937-9, 13/08293-7)

PAUPITZ, RICARDO; DA SILVA, TALES J.; CALDAS, MARILIA J.; GALVAO, DOUGLAS S.; FONSECA, ALEXANDRE F.. Auxetic properties of a newly proposed gamma-graphyne-like material. Chemical Physics Letters, v. 787, p. 5-pg., 2022-01-01. (18/03961-5, 13/08293-7, 08/57706-4, 20/02044-9)

SILVA-SANTOS, SILVIO D.; IMPELLIZZERI, ANTHONY; AGUIAR, ACRISIO L.; JOURNET, CATHERINE; DALVERNY, CHARLINE; TOURY, BERANGERE; DE SOUSA, JOSE M.; EWELS, CHRIS P.; SAN-MIGUEL, ALFONSO. High Pressure in Boron Nitride Nanotubes for Kirigami Nanoribbon Elaboration. Journal of Physical Chemistry C, v. 125, n. 21, p. 11440-11453, JUN 3 2021. (13/08293-7)

MIRANDA, GUILHERME HENRIQUE SANTOS; ALEXANDRINO, ALEXSANDRO OLIVEIRA; LINTZMAYER, CARLA NEGRI; DIAS, ZANONI. Approximation Algorithms for Sorting lambda-Permutations by lambda-Operations. ALGORITHMS, v. 14, n. 6, JUN 2021. (13/08293-7, 15/11937-9, 17/16871-1, 17/12646-3, 17/16246-0)

SANTOS, THIFANY JUSTO; PAGGIARO, JULIANA; CABRAL SILVA PIMENTEL, HELHE DAIANY; DOS SANTOS PEREIRA, ANNA KARLA; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Computational study of the interaction of heavy metal ions, Cd(II), Hg(II), and Pb(II) on lignin matrices. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, v. 111, MAR 2022. (17/11485-6, 13/08293-7)

RICCIARDI, TULIO R.; WOLF, WILLIAM R.; SPALART, PHILIPPE R.. On the Application of Incomplete Ffowcs Williams and Hawkings Surfaces for Aeroacoustic Predictions. AIAA JOURNAL, NOV 2021. (13/08293-7)

OLIVEIRA, ANDRE RODRIGUES; JEAN, GERALDINE; FERTIN, GUILLAUME; BRITO, KLAIRTON LIMA; DIAS, ULISSES; DIAS, ZANONI. orting Permutations by Intergenic Operation. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, v. 18, n. 6, p. 2080-2093, NOV 1 2021. (19/27331-3, 13/08293-7, 17/12646-3, 15/11937-9)

OLIVEIRA, ANDRE RODRIGUES; JEAN, GERALDINE; FERTIN, GUILLAUME; BRITO, KLAIRTON LIMA; BULTEAU, LAURENT; DIAS, ULISSES; DIAS, ZANONI. Sorting Signed Permutations by Intergenic Reversals. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, v. 18, n. 6, p. 2870-2876, NOV 1 2021. (13/08293-7, 19/27331-3, 17/16246-0, 17/12646-3)

CORADINI, V, ALESSANDRO L.; BEZERRA DE MELLO, FELLIPE DA SILVEIRA; FURLAN, MONIQUE; MANEIRA, CARLA; CARAZZOLLE, MARCELO F.; GUIMARAES PEREIRA, GONCALO AMARANTE; TEIXEIRA, GLEIDSON SILVA. QTL mapping of a Brazilian bioethanol strain links the cell wall protein-encoding gene GAS1 to low pH tolerance in S. cerevisiae. BIOTECHNOLOGY FOR BIOFUELS, v. 14, n. 1, DEC 16 2021. (16/12852-0, 16/02506-7, 15/06677-8, 14/26719-4, 18/03403-2, 13/08293-7)

BOTTINO, GUILHERME F.; FERRARI, ALLAN J. R.; GOZZO, FABIO C.; MARTINEZ, LEANDRO. Structural discrimination analysis for constraint selection in protein modeling. Bioinformatics, v. 37, n. 21, p. 3766-3773, NOV 1 2021. (13/08293-7, 16/13195-2, 19/17007-4, 10/16947-9, 18/14274-9)

DE ALCANTARA, AMADEUS C. S.; FELIX, LEVI C.; GALVAO, DOUGLAS S.; SOLLERO, PAULO; SKAF, MUNIR S.. The Role of the Extrafibrillar Volume on the Mechanical Properties of Molecular Models of Mineralized Bone Microfibrils. ACS BIOMATERIALS SCIENCE & ENGINEERING, v. 9, n. 1, p. 16-pg., 2023-01-09. (13/08293-7, 18/18503-2)

DE KONING, MAURICE; CAI, WEI. Dislocation-position fluctuations in solid He-4 as collective variables in a quantum crystal. NPJ QUANTUM MATERIALS, v. 7, n. 1, p. 7-pg., 2022-12-27. (13/08293-7, 16/23891-6)

OLIVEIRA, ELIEZER F.; AMBEKAR, RUSHIKESH S.; GALVAO, DOUGLAS S.; TIWARY, CHANDRA S.. Schwarzites and schwarzynes based load-bear resistant 3D printed hierarchical structures. ADDITIVE MANUFACTURING, v. 60, p. 12-pg., 2022-10-13. (19/07157-9, 13/08293-7, 16/18499-0)

DESYATKIN, VICTOR G.; MARTIN, WILLIAM B.; ALIEV, ALI E.; CHAPMAN, NATHANIEL E.; FONSECA, ALEXANDRE F.; GALVAO, DOUGLAS S.; MILLER, ERICKA ROY; STONE, KEVIN H.; WANG, ZHONG; ZAKHIDOV, DANTE; et al. Scalable Synthesis and Characterization of Multilayer gamma-Graphyne, New Carbon Crystals with a Small Direct Band Gap. Journal of the American Chemical Society, v. 144, n. 39, p. 10-pg., 2022-09-21. (20/02044-9, 13/08293-7)

NAPOLI, OTAVIO OLIVEIRA; DO ROSARIO, VANDERSON MARTINS; ARANHA, DIEGO FREITAS; BORIN, EDSON; BIANCHINI, C; OSTHOFF, C; SOUZA, P; FERREIRA, R. Evaluation and Mitigation of Timing Side-Channel Leakages on Multiple-Target Dynamic Binary Translators. HIGH PERFORMANCE COMPUTING SYSTEMS, WSCAD 2018, v. 1171, p. 16-pg., 2020-01-01. (13/08293-7)

DE OLIVEIRA, IVAN PIRES; MARTINEZ, LEANDRO. The shift in urea orientation at protein surfaces at low pH is compatible with a direct mechanism of protein denaturation. Physical Chemistry Chemical Physics, v. 22, n. 1, p. 354-367, JAN 7 2020. (17/02201-4, 18/24293-0, 10/16947-9, 13/08293-7)

PARK, OK-KYUNG; OWUOR, PETER SAMORA; JAQUES, YGOR MORAIS; GALVAO, DOUGLAS SOARES; KIM, NAM HOON; LEE, JOONG HEE; TIWARY, CHANDRA SEKHAR; AJAYAN, PULICKEL M.. Hexagonal boron nitride-carbon nanotube hybrid network structure for enhanced thermal, mechanical and electrical properties of polyimide nanocomposites. COMPOSITES SCIENCE AND TECHNOLOGY, v. 188, 2020. (16/12341-5, 13/08293-7)

TROMER, RAPHAEL M.; FELIX, LEVI C.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.. On the structural stability and optical properties of germanium-based schwarzites: a density functional theory investigation. Physical Chemistry Chemical Physics, v. 22, n. 28, p. 16286-16293, JUL 28 2020. (13/08293-7)

NEUMANN, LUCAS S. M.; DIAS, ARTUR H. S.; SKAF, MUNIR S.. Molecular Modeling of Aquaporins from Leishmania major. Journal of Physical Chemistry B, v. 124, n. 28, p. 5825-5836, JUL 16 2020. (13/08293-7)

DAMASCENO, DANIELA A.; RAJAPAKSE, R. K. N. D. NIMAL; MESQUITA, EUCLIDES. Atomistic Modelling of Size-Dependent Mechanical Properties and Fracture of Pristine and Defective Cove-Edged Graphene Nanoribbons. NANOMATERIALS, v. 10, n. 7, JUL 2020. (13/08293-7)

PEREIRA JUNIOR, MARCELO L.; RIBEIRO JUNIOR, LUIZ A.; BRANDAO, WJEFFERSON H. S.; AGUIAR, ACRISIO L.; GALVAO, DOUGLAS S.; DE SOUSA, JOSE M.. Temperature Effects on the Fracture Dynamics and Elastic Properties of Popgraphene Membranes. ChemPhysChem, v. 21, n. 17, AUG 2020. (13/08293-7)

BEZERRA, LEYDIANE BARBOSA; CARLOS, THAYRINE DIAS; NOGUEIRA DAS NEVES, ANA PAULA; DURAES, WHISLEY ALCENO; SARMENTO, RENATO DE ALMEIDA; PEREIRA, DOUGLAS HENRIQUE; CAVALLINI, GRASIELE SOARES. Theoretical-experimental study of the advanced oxidative process using peracetic acid and solar radiation: Removal efficiency and thermodynamic elucidation of radical formation processes. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY, v. 423, JAN 15 2022. (17/11485-6, 13/08293-7)

RAMOS, BRENER L. O.; WOLF, WILLIAM R.; YEH, CHI-AN; TAIRA, KUNIHIKO. Active flow control for drag reduction of a plunging airfoil under deep dynamic stall. PHYSICAL REVIEW FLUIDS, v. 4, n. 7, JUL 19 2019. (18/04210-3, 13/07375-0, 13/08293-7)

CAJAHUARINGA, SAMUEL; ZANOTTO, LEANDRO N.; CAETANO, DANIEL L. Z.; RIGO, SANDRO; YVIQUEL, HERVE; SKAF, MUNIR S.; ARAUJO, GUIDO; IEEE COMP SOC. Ion-Molecule Collision Cross-Section Simulation using Linked-cell and Trajectory Parallelization. 2022 IEEE 34TH INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING (SBAC-PAD 2022), v. N/A, p. 10-pg., 2022-01-01. (12/24750-6, 16/04963-6, 13/08293-7, 21/03224-3, 19/19662-0)

MIOTTO, RENATO; WOLF, WILLIAM; GAITONDE, DATTA; VISBAL, MIGUEL. Pitch-Plunge Equivalence in Dynamic Stall of Ramp Motion Airfoils. ENERGY AND BUILDINGS, v. 277, p. 14-pg., 2022-11-14. (22/09196-4, 13/08293-7, 21/06448-0, 17/10795-1, 19/02335-6, 13/07375-0)

PEREIRA, ANDER F.; PICCOLI, VINICIUS; MARTINEZ, LEANDRO. Trifluoroethanol direct interactions with protein backbones destabilize a-helices. JOURNAL OF MOLECULAR LIQUIDS, v. 365, p. 11-pg., 2022-09-01. (20/04549-0, 20/04916-3, 18/14274-9, 18/24293-0, 13/08293-7, 10/16947-9)

FERNANDES, ANA JULIA FOGANHOLI CARVALHO; BERTOZO, LUIZA DE CARVALHO; POVINELLI, ANA PAULA RIBEIRO; ZAZERI, GABRIEL; DE SOUZA, AGUINALDO ROBINSON; MORGON, NELSON HENRIQUE; XIMENES, VALDECIR FARIAS. 4-Dimethylamino-beta-nitrostyrene, a fluorescent solvatochromic probe to estimate the apparent dielectric constant in serum albumin: Experimental and molecular dynamics studies. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY, v. 433, p. 12-pg., 2022-08-11. (13/08293-7, 15/22338-9, 19/18445-5)

AZEVEDO, DAVID L.; BIZAO, RAFAEL A.; GALVAO, DOUGLAS S.. Molecular dynamics simulations of ballistic penetration of penta-graphene sheets. MRS ADVANCES, v. 3, n. 8-9, p. 431-435, 2018. (13/08293-7)

FONSECA, ALEXANDRE F.; GALVAO, DOUGLAS S.. Self-Driven Graphene Tearing and Peeling: A Fully Atomistic Molecular Dynamics Investigation. MRS ADVANCES, v. 3, n. 8-9, p. 460-465, 2018. (16/00023-9, 13/08293-7)

OLIVEIRA, ELIEZER FERNANDO; DA SILVA AUTRETO, PEDRO ALVES; GALVAO, DOUGLAS SOARES. Silver Hardening via Hypersonic Impacts. MRS ADVANCES, v. 3, n. 8-9, p. 489-494, 2018. (13/08293-7, 16/18499-0)

WOELLNER, CRISTIANO F.; OWUOR, PETER S.; LI, TONG; VINOD, SOUNLYA; OZDEN, SEHMUS; KOSOLWATTANA, SUPPANAT; BHOWMICK, SANJIT; DUY, LUONG X.; SALVATIERRA, RODRIGO V.; WEI, BINGQING; et al. Mechanical Properties of Ultralow Density Graphene Oxide/Polydimethylsiloxane Foams. MRS ADVANCES, v. 3, n. 1-2, p. 61-66, 2018. (13/08293-7, 14/24547-1)

OLIVEIRA, ELIEZER FERNANDO; BARBOSA DOS SANTOS, RICARDO PAUPITZ; DA SILVA ANTRETO, PEDRO ALVES; MOSHKALEV, STANISLAV; GALVAO, DOUGLAS SOARES. Improving Graphene-metal Contacts: Thermal Induced Polishing. MRS ADVANCES, v. 3, n. 1-2, p. 73-78, 2018. (16/18499-0, 13/08293-7)

DE SOUSA, J. M.; AGUIAR, A. L.; GIRAO, E. C.; FONSECA, ALEXANDRE F.; SOUZA FILHO, A. G.; GALVAO, DOUGLAS S.. Mechanical Properties of Pentagraphene-based Nanotubes: A Molecular Dynamics Study. MRS ADVANCES, v. 3, n. 1-2, p. 97-102, 2018. (13/08293-7, 16/00023-9)

ARRUDA, THIAGO DA SILVA; DIAS, ULISSES; DIAS, ZANONI. A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, v. 15, n. 2, p. 352-363, MAR-APR 2018. (14/19401-8, 12/01584-3, 13/08293-7)

LOPEZ MOLANO, EDDY PATRICIA; CABRERA, ODALYS GARCIA; JOSE, JULIANA; DO NASCIMENTO, LEANDRO COSTA; CARAZZOLLE, MARCELO FALSARELLA; PEREIRA LIMA TEIXEIRA, PAULO JOSE; CORREA ALVAREZ, JAVIER; TIBURCIO, RICARDO AUGUSTO; TOKIMATU FILHO, PAULO MASSANARI; ALVARES DE LIMA, GUSTAVO MACHADO; et al. Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC). BMC Genomics, v. 19, JAN 17 2018. (13/08293-7, 09/50119-9)

SAJADI, SEYED MOHAMMAD; OWUOR, PETER SAMORA; SCHARA, STEVEN; WOELLNER, CRISTIANO F.; RODRIGUES, VARLEI; VAJTAI, ROBERT; LOU, JUN; GALVAO, DOUGLAS S.; TIWARY, CHANDRA SEKHAR; AJAYAN, PULICKEL M.. Multiscale Geometric Design Principles Applied to 3D Printed Schwarzites. Advanced Materials, v. 30, n. 1, JAN 4 2018. (13/08293-7, 16/12340-9)

SUSARLA, SANDHYA; MANIMUNDA, PRAVEENA; JAQUES, YGOR MORAIS; HACHTEL, JORDAN A.; IDROBO, JUAN CARLOS; AMNULLA, SYED ASIF SYED; GALVAO, DOUGLAS SOARES; TIWARY, CHANDRA SEKHAR; AJAYAN, PULICKEL M.. Deformation Mechanisms of Vertically Stacked WS2/MoS2 Heterostructures: The Role of Interfaces. ACS NANO, v. 12, n. 4, p. 4036-4044, APR 2018. (13/08293-7, 16/12341-5)

COLLINS, SEAN P.; PERIM, E.; DAFF, THOMAS D.; SKAF, MUNIR S.; GALVAO, DOUGLAS S.; WOO, TOM K.. Idealized Carbon-Based Materials Exhibiting Record Deliverable Capacities for Vehicular Methane Storage. Journal of Physical Chemistry C, v. 123, n. 2, p. 1050-1058, JAN 17 2019. (13/08293-7)

GONZALEZ-ROMERO, ROBERT L.; ANTONELLI, ALEX; MELENDEZ, JUAN J.. Insights into the thermoelectric properties of SnSe from ab initio calculations. Physical Chemistry Chemical Physics, v. 19, n. 20, p. 12804-12815, MAY 28 2017. (13/08293-7, 13/14065-7)

GALVAO, GUSTAVO RODRIGUES; BAUDET, CHRISTIAN; DIAS, ZANONI. Sorting Circular Permutations by Super Short Reversals. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, v. 14, n. 3, p. 620-633, MAY-JUN 2017. (13/08293-7, 14/04718-6)

BIZAO, R. A.; BOTARI, T.; PERIM, E.; PUGNO, NICOLA M.; GALVAO, D. S.. Mechanical properties and fracture patterns of graphene (graphitic) nanowiggles. Carbon, v. 119, p. 431-437, AUG 2017. (13/08293-7)

OWUOR, PETER SAMORA; WOELLNER, CRISTIANO F.; LI, TONG; VINOD, SOUMYA; OZDEN, SEHMUS; KOSOLWATTANA, SUPPANAT; BHOWMICK, SANJIT; DUY, LUONG XUAN; SALVATIERRA, RODRIGO V.; WEI, BINGQING; et al. High Toughness in Ultralow Density Graphene Oxide Foam. ADVANCED MATERIALS INTERFACES, v. 4, n. 10, MAY 23 2017. (13/08293-7, 16/12340-9)

PICELLI, R.; VICENTE, W. M.; PAVANELLO, R.. Evolutionary topology optimization for structural compliance minimization considering design-dependent FSI loads. FINITE ELEMENTS IN ANALYSIS AND DESIGN, v. 135, p. 44-55, NOV 1 2017. (15/18607-4, 13/08293-7, 13/00085-6, 11/09730-6)

CALDEIRA, MARIANA TORETTI; CUSTODIO, ROGERIO. Partial combination of composite strategy and the B3LYP functional for the calculation of enthalpies of formation. Journal of Molecular Modeling, v. 25, n. 3, MAR 2019. (13/08293-7, 17/11485-6)

WOELLNER, C. F.; MACHADO, L. D.; AUTRETO, P. A. S.; DE SOUSA, J. M.; GALVAO, D. S.. Structural transformations of carbon and boron nitride nanoscrolls at high impact collisions. Physical Chemistry Chemical Physics, v. 20, n. 7, p. 4911-4916, FEB 21 2018. (14/24547-1, 13/08293-7)

LOPEZ, ALVARO J.; MARTINEZ, LEANDRO. Parametric models to compute tryptophan fluorescence wavelengths from classical protein simulations. Journal of Computational Chemistry, v. 39, n. 19, p. 1249-1258, JUL 15 2018. (13/08293-7, 13/05475-7, 10/16947-9)

DE MACEDO BARTOLETI, LUIZ FILIPE; PERES, ELEN ARROYO; MASCARENHAS FONTES, FERNANDA VON HERTWIG; DA SILVA, MARCIO JOSE; SOLFERINI, VERA NISAKA. Phylogeography of the widespread spider Nephila clavipes (Araneae: Araneidae) in South America indicates geologically and climatically driven lineage diversification. Journal of Biogeography, v. 45, n. 6, p. 1246-1260, JUN 2018. (13/08293-7)

RIBEIRO, HELIO; TRIGUEIRO, JOAO P. C.; OWUOR, PETER S.; MACHADO, LEONARDO D.; WOELLNER, CRISTIANO F.; PEDROTTI, JAIRO J.; JAQUES, YGOR M.; KOSOLWATTANA, SUPPANAT; CHIPARA, ALIN; SILVA, WELLINGTON M.; et al. Hybrid 2D nanostructures for mechanical reinforcement and thermal conductivity enhancement in polymer composites. COMPOSITES SCIENCE AND TECHNOLOGY, v. 159, p. 103-110, MAY 3 2018. (13/08293-7, 16/12340-9)

DOS SANTOS, RICARDO N.; FERRARI, ALLAN J. R.; DE JESUS, HUGO C. R.; GOZZO, FABIO C.; MORCOS, FARUCK; MARTINEZ, LEANDRO. Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals. Bioinformatics, v. 34, n. 13, p. 2201-2208, JUL 1 2018. (13/08293-7, 13/05475-7, 16/13195-2, 14/17264-3, 15/13667-9, 10/16947-9)

BALAN, ARAVIND PUTHIRATH; RADHAKRISHNAN, SRUTHI; WOELLNER, CRISTIANO F.; SINHA, SHYAM K.; DENG, LIANGZI; DE LOS REYES, CARLOS; RAO, BANKI MANMADHA; PAULOSE, MAGGIE; NEUPANE, RAM; APTE, AMEY; et al. Exfoliation of a non-van der Waals material from iron ore hematite. NATURE NANOTECHNOLOGY, v. 13, n. 7, p. 602+, JUL 2018. (13/08293-7, 16/12340-9)

CUSTODIO, ROGERIO; TAVARES DE MORAIS, GUILHERME DE SOUZA; RODRIGUES, MAURICIO GUSTAVO. A grid-based variational method to the solution of the Schrodinger equation: the q-exponential and the near Hartree-Fock results for the ground state atomic energies. Journal of Molecular Modeling, v. 24, n. 7, JUL 2018. (13/08293-7, 17/11485-6)

GAUTAM, CHANDKIRAM; CHAKRAVARTY, DIBYENDU; GAUTAM, AMARENDRA; TIWARY, CHANDRA SEKHAR; WOELLNER, CRISTIANO FRANCISCO; MISHRA, VIJAY KUMAR; AHMAD, NASEER; OZDEN, SEHMUS; JOSE, SUJIN; BIRADAR, SANTOSHKUMAR; et al. Synthesis and 3D Interconnected Nanostructured h-BN-Based Biocomposites by Low-Temperature Plasma Sintering: Bone Regeneration Applications. ACS OMEGA, v. 3, n. 6, p. 6013-6021, JUN 2018. (16/12340-9, 13/08293-7)

BORELLI, GUILHERME; FIAMENGHI, MATEUS BERNABE; DOS SANTOS, LEANDRO VIEIRA; CARAZZOLLE, MARCELO FALSARELLA; GUIMARAES PEREIRA, GONCALO AMARANTE; JOSE, JULIANA. Positive Selection Evidence in Xylose-Related Genes Suggests Methylglyoxal Reductase as a Target for the Improvement of Yeasts' Fermentation in Industry. GENOME BIOLOGY AND EVOLUTION, v. 11, n. 7, p. 1923-1938, JUL 2019. (13/08293-7, 17/07008-8, 15/05578-6, 17/08519-6)

LABAKI, JOSUE; BARROS, PERSIO L. A.; MESQUITA, EUCLIDES. Coupled horizontal and rocking vibration, and seismic shear-wave scattering of a piled plate on a transversely isotropic half-space. Engineering Analysis with Boundary Elements, v. 106, p. 609-623, SEP 2019. (17/01450-0, 13/08293-7)

LABAKI, JOSUE; ADOLPH, MARCO; MESQUITA, EUCLIDES. A derivation of nonsingular displacement and stress fields within a 3D full-space through Radon transforms. Engineering Analysis with Boundary Elements, v. 106, p. 624-633, SEP 2019. (17/01450-0, 13/08293-7)

SILVEIRA, RODRIGO L.; STOYANOV, STANISLAV R.; KOVALENKO, ANDRIY; SKAF, MUNIR S.. Cellulose Aggregation under Hydrothermal Pretreatment Conditions. Biomacromolecules, v. 17, n. 8, p. 2582-2590, AUG 2016. (13/08293-7, 14/10448-1)

FRANCO PINHEIRO MOREIRA, PEDRO AUGUSTO; DE KONING, MAURICE. Nuclear quantum fluctuations in ice I-h. Physical Chemistry Chemical Physics, v. 17, n. 38, p. 24716-24721, 2015. (13/08293-7)

MALVIYA, KIRTIMAN D.; OLIVEIRA, ELIEZER F.; AUTRETO, PEDRO A. S.; AJAYAN, PULICKEL M.; GALVAO, DOUGLAS S.; TIWARY, CHANDRA S.; CHATTOPADHYAY, KAMANIO. Mixing the immiscible through high-velocity mechanical impacts: an experimental and theoretical study. JOURNAL OF PHYSICS D-APPLIED PHYSICS, v. 52, n. 44, OCT 30 2019. (13/08293-7, 16/18499-0)

ZHAO, H.; GELIUS, L. -J.; TYGEL, M.; NILSEN, E. HARRIS; EVENSEN, A. KJELSRUD. 3D Prestack Fourier Mixed-Domain (FMD) depth migration for VTI media with large lateral contrasts. JOURNAL OF APPLIED GEOPHYSICS, v. 168, p. 118-127, SEP 2019. (13/08293-7)

AZEVEDO, F. M.; MOURA, M. S.; VICENTE, W. M.; PICELLI, R.; PAVANELLO, R.. Topology optimization of reactive acoustic mufflers using a bi-directional evolutionary optimization method. STRUCTURAL AND MULTIDISCIPLINARY OPTIMIZATION, v. 58, n. 5, p. 2239-2252, NOV 2018. (13/00085-6, 15/18607-4, 13/08293-7)

SANTOS-FLOREZ, PEDRO ANTONIO; RUESTES, CARLOS J.; DE KONING, MAURICE. Uniaxial-deformation behavior of ice I-h as described by the TIP4P/Ice and mW water models. Journal of Chemical Physics, v. 149, n. 16, OCT 28 2018. (13/08293-7, 16/23891-6)

DAFF, THOMAS D.; COLLINS, SEAN P.; DURECKOVA, HANA; PERIM, ERIC; SKAF, MUNIR S.; GALVAO, DOUGLAS S.; WOO, TOM K.. Evaluation of carbon nanoscroll materials for post-combustion CO2 capture. Carbon, v. 101, p. 218-225, MAY 2016. (13/08293-7)

SILVEIRA, RODRIGO L.; SKAF, MUNIR S.. Molecular dynamics of the Bacillus subtilis expansin EXLX1: interaction with substrates and structural basis of the lack of activity of mutants. Physical Chemistry Chemical Physics, v. 18, n. 5, p. 3510-3521, FEB 7 2016. (13/08293-7, 14/10448-1)

MARMEROLA, GUILHERME D.; OIKAWA, MARINA A.; DIAS, ZANONI; GOLDENSTEIN, SIOME; ROCHA, ANDERSON. On the Reconstruction of Text Phylogeny Trees: Evaluation and Analysis of Textual Relationships. PLoS One, v. 11, n. 12, DEC 19 2016. (14/19401-8, 15/19222-9, 14/13433-5, 13/08293-7, 14/03535-5)

ALVES, ANA PAULA P.; KOIZUMI, RYOTA; SAMANTA, ATANU; MACHADO, LEONARDO D.; SINGH, ABHISEK K.; GALVAO, DOUGLAS S.; SILVA, GLAURA G.; TIWARY, CHANDRA S.; AJAYAN, PULICKEL M.. One-step electrodeposited 3D-ternary composite of zirconia nanoparticles, rGO and polypyrrole with enhanced supercapacitor performance. NANO ENERGY, v. 31, p. 225-232, JAN 2017. (13/08293-7)

LI, BO; GONG, YONGJI; HU, ZHILI; BRUNETTO, GUSTAVO; YANG, YINGCHAO; YE, GONGLAN; ZHANG, ZHUHUA; LEI, SIDONG; JIN, ZEHUA; BIANCO, ELISABETH; et al. Solid-Vapor Reaction Growth of Transition-Metal Dichalcogenide Monolayers. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, v. 55, n. 36, p. 10656-10661, AUG 26 2016. (13/08293-7)

ALMEIDA, CLARA M.; PRIOLI, RODRIGO; FRAGNEAUD, BENJAMIN; CANCADO, LUIZ GUSTAVO; PAUPITZ, RICARDO; GALVAO, DOUGLAS S.; DE CICCO, MARCELO; MENEZES, MARCOS G.; ACHETE, CARLOS A.; CAPAZ, RODRIGO B.. Giant and Tunable Anisotropy of Nanoscale Friction in Graphene. SCIENTIFIC REPORTS, v. 6, AUG 18 2016. (14/15521-9, 13/08293-7)

FERRARI, ALLAN J. R.; GOZZO, FABIO C.; MARTINEZ, LEANDRO. Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints. Bioinformatics, v. 35, n. 17, p. 3005-3012, SEP 1 2019. (13/08293-7, 13/05475-7, 18/14274-9, 16/13195-2, 14/17264-3, 13/23814-3, 10/16947-9)

FERRARI, ALLAN J. R.; CLASEN, MILAN A.; KURT, LOUISE; CARVALHO, PAULO C.; GOZZO, FABIO C.; MARTINEZ, LEANDRO. TopoLink: evaluation of structural models using chemical crosslinking distance constraints. Bioinformatics, v. 35, n. 17, p. 3169-3170, SEP 1 2019. (13/08293-7, 13/05475-7, 18/14274-9, 16/13195-2, 10/16947-9)

DE AGUIAR FILHO, SILVIO QUINTINO; FERREIRA COSTA, ADAO MARCOS; SANTOS RIBEIRO, IGOR HERNANDES; CUSTODIO, ROGERIO; PEREIRA, DOUGLAS HENRIQUE. Theoretical study of the internal rotational barriers of fluorine, chlorine, bromine, and iodine-substituted ethanes. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1166, OCT 15 2019. (13/08293-7, 17/11485-6)

WANG, RUN; FANG, SHAOLI; XIAO, YICHENG; GAO, ENLAI; JIANG, NAN; LI, YAOWANG; MOU, LINLIN; SHEN, YANAN; ZHAO, WUBIN; LI, SITONG; et al. Torsional refrigeration by twisted, coiled, and supercoiled fibers. Science, v. 366, n. 6462, p. 216+, OCT 11 2019. (13/08293-7, 18/02992-4)

DO ROSARIO, VANDERSON MARTINS; BORIN, EDSON; BRETERNITZ, JR., MAURICIO. The Multi-Lane Capsule Network. IEEE SIGNAL PROCESSING LETTERS, v. 26, n. 7, p. 1006-1010, JUL 2019. (13/08293-7)

SOUSA, RAFAEL; PEREIRA, MARCIO; QUINTAO PEREIRA, FERNANDO MAGNO; ARAUJO, GUIDO. Data-flow analysis and optimization for data coherence in heterogeneous architectures. JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING, v. 130, p. 126-139, AUG 2019. (13/08293-7)

TOMAS, JORDI CREUS; FARIA, FABIO AUGUSTO; DALLA MORA ESQUERDO, JULIO CESAR; COUTINHO, ALEXANDRE CAMARGO; MEDEIROS, CLAUDIA BAUZER. SiRCub, A Novel Approach to Recognize Agricultural Crops Using Supervised Classification. INTERNATIONAL JOURNAL OF AGRICULTURAL AND ENVIRONMENTAL INFORMATION SYSTEMS, v. 8, n. 4, p. 20-36, OCT-DEC 2017. (13/08293-7, 12/25169-5)

SHARIFI, TIVA; ZHANG, XIANG; COSTIN, GELU; YAZDI, SADEGH; WOELLNER, CRISTIANO F.; LIU, YANG; TIWARY, CHANDRA SEKHAR; AJAYAN, PULICKEL. Thermoelectricity Enhanced Electrocatalysis. Nano Letters, v. 17, n. 12, p. 7908-7913, DEC 2017. (13/08293-7, 16/12340-9)

RIBEIRO, ANTONIO C. C.; CAMARGO, HENRIQUE S.; PEREIRA, DOUGLAS H.; CUSTODIO, ROGERIO; MARTINS, TATIANA D.. Photoluminescence of Solvent-Selected Fluorescent Moieties in MEH-PPV Solutions and Films. Journal of the Brazilian Chemical Society, v. 29, n. 3, p. 543-559, MAR 2018. (13/08293-7)

YU, LI; LYCZAKOWSKI, JAN J.; PEREIRA, CAROLINE S.; KOTAKE, TOSHIHISA; YU, XIAOLAN; LI, AN; MOGELSVANG, SOREN; SKAF, MUNIR S.; DUPREE, PAUL. The Patterned Structure of Galactoglucomannan Suggests It May Bind to Cellulose in Seed Mucilage. Plant Physiology, v. 178, n. 3, p. 1011-1026, NOV 2018. (13/08293-7)

BHOWMICK, SANJIT; OZDEN, SEHMUS; BIZAO, RAFAEL A.; MACHADO, LEONARDO DANTAS; ASIF, S. A. SYED; PUGNO, NICOLA M.; GALVAO, DOUGLAS S.; TIWARY, CHANDRA SEKHAR; AJAYAN, P. M.. High temperature quasistatic and dynamic mechanical behavior of interconnected 3D carbon nanotube structures. Carbon, v. 142, p. 291-299, FEB 2019. (13/08293-7)

FONSECA, ALEXANDRE F.; DANTAS, SOCRATES O.; GALVAO, DOUGLAS S.; ZHANG, DIFAN; SINNOTT, SUSAN B.. The structure of graphene on graphene/C-60/Cu interfaces: a molecular dynamics study. Nanotechnology, v. 30, n. 50, DEC 13 2019. (18/02992-4, 13/08293-7)

RUBIO, MARCELO VENTURA; FANCHINI TERRASAN, CESAR RAFAEL; CONTESINI, FABIANO JARES; ZUBIETA, MARIANE PALUDETTI; GERHARDT, JAQUELINE ALINE; OLIVEIRA, LEANDRO CRISTANTE; DE SOUZA SCHMIDT GONCALVES, ANY ELISA; ALMEIDA, FAUSTO; SMITH, BRADLEY JOSEPH; MARTINS FERREIRA DE SOUZA, GUSTAVO HENRIQUE; et al. Redesigning N-glycosylation sites in a GH3 beta-xylosidase improves the enzymatic efficiency. BIOTECHNOLOGY FOR BIOFUELS, v. 12, n. 1, NOV 14 2019. (12/20549-4, 13/08293-7, 16/16306-0, 17/22669-0, 17/10083-1, 19/00098-7, 14/15403-6, 13/24988-5)

DA SILVA, WESLEY PEREIRA; CARLOS, THAYRINE DIAS; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Peracetic acid: Structural elucidation for applications in wastewater treatment. WATER RESEARCH, v. 168, JAN 1 2020. (13/08293-7, 17/11485-6)

DE SOUSA, J. M.; BIZAO, R. A.; SOUSA FILHO, V. P.; AGUIAR, A. L.; COLUCI, V. R.; PUGNO, N. M.; GIRAO, E. C.; SOUZA FILHO, A. G.; GALVAO, D. S.. Elastic properties of graphyne-based nanotubes. COMPUTATIONAL MATERIALS SCIENCE, v. 170, DEC 2019. (13/08293-7)

SANTOS, CAMILA R.; COSTA, PEDRO A. C. R.; VIEIRA, PLINIO S.; GONZALEZ, SINKLER E. T.; CORREA, THAMY L. R.; LIMA, EVANDRO A.; MANDELLI, FERNANDA; PIROLLA, RENAN A. S.; DOMINGUES, MARIANE N.; CABRAL, LUCELIA; et al. Structural insights into beta-1,3-glucan cleavage by a glycoside hydrolase family. Nature Chemical Biology, v. 16, n. 8, MAY 2020. (13/08293-7, 15/26982-0)

REIS, DAVI TEXEIRA; DE AGUIAR FILHO, SILVIO QUINTINO; LOPES GROTTO, CARLOS GUILHERME; RIBEIRO BIHAIN, MURIELLY FERNANDA; PEREIRA, DOUGLAS HENRIQUE. Carboxymethylcellulose and cellulose xanthate matrices as potential adsorbent material for potentially toxic Cr3+, Cu2+ and Cd(2+)metal ions: a theoretical study. THEORETICAL CHEMISTRY ACCOUNTS, v. 139, n. 6, MAY 25 2020. (13/08293-7, 17/11485-6)

RICCIARDI, TULIO R.; ARIAS-RAMIREZ, WALTER; WOLF, WILLIAM R.. On secondary tones arising in trailing-edge noise at moderate Reynolds numbers. EUROPEAN JOURNAL OF MECHANICS B-FLUIDS, v. 79, p. 54-66, JAN-FEB 2020. (18/11835-0, 13/08293-7)

DE OLIVEIRA, IVAN PIRES; LESCANO, CAROLINE HONAISER; DE NUCCI, GILBERTO. In Silico Mapping of Essential Residues in the Catalytic Domain of PDE5 Responsible for Stabilization of Its Commercial Inhibitors. SCIENTIA PHARMACEUTICA, v. 87, n. 4, DEC 2019. (13/22360-9, 10/16947-9, 13/08293-7, 13/05475-7, 17/02201-4, 17/26687-3)

SAJADI, SEYED MOHAMMAD; WOELLNER, CRISTIANO F.; RAMESH, PRATHYUSH; EICHMANN, SHANNON L.; SUN, QIUSHI; BOUL, PETER J.; THAEMLITZ, CARL J.; RAHMAN, MUHAMMAD M.; BAUGHMAN, RAY H.; GALVAO, DOUGLAS S.; et al. 3D Printed Tubulanes as Lightweight Hypervelocity Impact Resistant Structures. SMALL, v. 15, n. 52, DEC 2019. (13/08293-7)

DOS SANTOS, RICARDO N.; BOTTINO, GUILHERME F.; GOZZO, FABIO C.; MORCOS, FARUCK; MARTINEZ, LEANDRO. Structural complementarity of distance constraints obtained from chemical cross-linking and amino acid coevolution. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v. 88, n. 4, NOV 2019. (18/14274-9, 10/16947-9, 15/13667-9, 18/24293-0, 13/08293-7, 14/17264-3)

CAJAHUARINGA, SAMUEL; ANTONELLI, ALEX. Nonequilibrium Free Energy Methods Applied to Magnetic Systems: The Degenerate Ising Model. Journal of Statistical Physics, v. 175, n. 5, p. 1006-1021, JUN 2019. (10/16970-0, 16/23891-6, 13/08293-7)

LUI, HUGO F. S.; WOLF, WILLIAM R.. Construction of reduced-order models for fluid flows using deep feedforward neural networks. JOURNAL OF FLUID MECHANICS, v. 872, p. 963-994, AUG 10 2019. (13/07375-0, 13/08293-7)

LINTZMAYER, CARLA NEGRI; FERTIN, GUILLAUME; DIAS, ZANONI. Sorting permutations by prefix and suffix rearrangements. JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, v. 15, n. 1, FEB 2017. (13/08293-7, 14/20738-7, 15/11937-9, 14/19401-8, 16/14132-4, 13/01172-0)

MOTTIN, MELINA; SOUZA, PAULO C. T.; RICCI, CLARISSE G.; SKAF, MUNIR S.. CHARMM Force Field Parameterization of Peroxisome Proliferator-Activated Receptor gamma Ligands. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 18, n. 1, JAN 2017. (12/24750-6, 11/22735-7, 13/08293-7)

ZINK, S.; MOURA, F. A.; ALVES DA SILVA AUTRETO, P.; GALVAO, D. S.; MIZAIKOFF, B.. Efficient prediction of suitable functional monomers for molecular imprinting via local density of states calculations. Physical Chemistry Chemical Physics, v. 20, n. 19, p. 13153-13158, MAY 21 2018. (13/08293-7)

AUSTIN, HARRY P.; ALLEN, MARK D.; DONOHOE, BRYON S.; RORRER, NICHOLAS A.; KEARNS, FIONA L.; SILVEIRA, RODRIGO L.; POLLARD, BENJAMIN C.; DOMINICK, GRAHAM; DUMAN, RAMONA; EL OMARI, KAMEL; et al. Characterization and engineering of a plastic-degrading aromatic polyesterase. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v. 115, n. 19, p. E4350-E4357, MAY 8 2018. (13/08293-7, 14/10448-1, 16/22956-7)

LEAL, REGIS CASIMIRO; PEREIRA, DOUGLAS HENRIQUE; CUSTODIO, ROGERIO. An energetic analysis of the Diels-Alder endo:exo selectivity reaction by using composite methods. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1123, p. 161-168, JAN 1 2018. (13/08293-7, 17/11485-6)

GONZALEZ-ROMERO, ROBERT L.; MIRANDA, CAETANO R.; AVILA, MARCOS A.; ANTONELLI, ALEX. Hosting of La3+ guest ions in type-I Ge clathrates: A first-principles characterization for thermoelectric applications. COMPUTATIONAL MATERIALS SCIENCE, v. 122, p. 46-56, SEP 2016. (13/08293-7, 12/17562-9, 11/19924-2, 13/14065-7, 10/16970-0)

KABBANI, MOHAMAD A.; TIWARY, CHANDRA SEKHAR; SOM, ANIRBAN; KRISHNADAS, K. R.; AUTRETO, PEDRO A. S.; OZDEN, SEHMUS; KEYSHAR, KUNTTAL; HACKENBERG, KEN; CHIPARA, ALIN CHRISTIAN; GALVAO, DOUGLAS S.; et al. A generic approach for mechano-chemical reactions between carbonnanotubes of different functionalities. Carbon, v. 104, p. 196-202, AUG 2016. (13/08293-7)

JARA, GABRIEL E.; MARTINEZ, LEANDRO. Anthrax Edema Factor: An Ion-Adaptive Mechanism of Catalysis with Increased Transition-State Conformational Flexibility. Journal of Physical Chemistry B, v. 120, n. 27, p. 6504-6514, JUL 14 2016. (13/08293-7, 13/05475-7, 13/22360-9, 10/16947-9)

HUANG, WEILIN; WANG, RUNQIU; CHEN, YANGKANG; LI, HUIJIAN; GAN, SHUWEI. Damped multichannel singular spectrum analysis for 3D random noise attenuation. GEOPHYSICS, v. 81, n. 4, p. V261-V282, JUL-AUG 2016. (13/08293-7)

JOSE, SUJIN P.; TIWARY, CHANDRA SEKHAR; KOSOLWATTANA, SUPPANAT; RAGHAVAN, PRASANTH; MACHADO, LEONARDO D.; GAUTAM, CHANDKIRAM; PRASANKUMAR, T.; JOYNER, JARIN; OZDEN, SEHMUS; GALVAO, DOUGLAS S.; et al. Enhanced supercapacitor performance of a 3D architecture tailored using atomically thin rGO-MoS2 2D sheets. RSC ADVANCES, v. 6, n. 96, p. 93384-93393, 2016. (13/08293-7)

GAUTAM, CHANDKIRAM; TIWARY, CHANDRA SEKHAR; MACHADO, LEONARDO D.; JOSE, SUJIN; OZDEN, SEHMUS; BIRADAR, SANTOSHKUMAR; GALVAO, DOUGLAS S.; SONKER, RAKESH K.; YADAV, B. C.; VAJTAI, ROBERT; et al. Synthesis and porous h-BN 3D architectures for effective humidity and gas sensors. RSC ADVANCES, v. 6, n. 91, p. 87888-87896, 2016. (13/08293-7)

SILVEIRA, RODRIGO L.; STOYANOV, STANISLAV R.; GUSAROV, SERGEY; SKAF, MUNIR S.; KOVALENKO, ANDRIY. Supramolecular Interactions in Secondary Plant Cell Walls: Effect of Lignin Chemical Composition Revealed with the Molecular Theory of Solvation. Journal of Physical Chemistry Letters, v. 6, n. 1, p. 206-211, JAN 1 2015. (13/08293-7, 14/10448-1)

KEYSHAR, KUNTTAL; GONG, YONGJI; YE, GONGLAN; BRUNETTO, GUSTAVO; ZHOU, WU; COLE, DANIEL P.; HACKENBERG, KEN; HE, YONGMIN; MACHADO, LEONARDO; KABBANI, MOHAMAD; et al. Chemical Vapor Deposition of Monolayer Rhenium Disulfide (ReS2). Advanced Materials, v. 27, n. 31, p. 4640-4648, AUG 19 2015. (13/08293-7)

LABAKI, J.; MESQUITA, E.; RAJAPAKSE, R. K. N. D.. Vertical Vibrations of an Elastic Foundation with Arbitrary Embedment within a Transversely Isotropic, Layered Soil. CMES-COMPUTER MODELING IN ENGINEERING & SCIENCES, v. 103, n. 5, p. 281-313, DEC 2014. (12/17948-4, 13/23085-1, 13/08293-7)

KABBANI, MOHAMAD A.; TIWARY, CHANDRA SEKHAR; AUTRETO, PEDRO A. S.; BRUNETTO, GUSTAVO; SOM, ANIRBAN; KRISHNADAS, K. R.; OZDEN, SEHMUS; HACKENBERG, KEN P.; GONG, YONGI; GALVAO, DOUGLAS S.; et al. Ambient solid-state mechano-chemical reactions between functionalized carbon nanotubes. NATURE COMMUNICATIONS, v. 6, JUN 2015. (13/08293-7)

MOTTIN, MELINA; SOUZA, PAULO C. T.; SKAF, MUNIR S.. Molecular Recognition of PPAR gamma by Kinase Cdk5/p25: Insights from a Combination of Protein-Protein Docking and Adaptive Biasing Force Simulations. Journal of Physical Chemistry B, v. 119, n. 26, p. 8330-8339, JUL 2 2015. (13/08293-7, 11/22735-7, 12/24750-6)

HEERDT, GABRIEL; PEREIRA, DOUGLAS HENRIQUE; CUSTODIO, ROGERIO; MORGON, NELSON HENRIQUE. W1CEP theory for computational thermochemistry. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1067, p. 84-92, SEP 1 2015. (13/08293-7)

LIU, Z. F.; FANG, S.; MOURA, F. A.; DING, J. N.; JIANG, N.; DI, J.; ZHANG, M.; LEPRO, X.; GALVAO, D. S.; HAINES, C. S.; et al. Hierarchically buckled sheath-core fibers for superelastic electronics, sensors, and muscles. Science, v. 349, n. 6246, p. 400-404, JUL 24 2015. (13/08293-7)

GALVAO, GUSTAVO RODRIGUES; LEE, ORLANDO; DIAS, ZANONI. Sorting signed permutations by short operations. Algorithms for Molecular Biology, v. 10, MAR 25 2015. (13/08293-7, 14/04718-6)

LAGOS, M. J.; AUTRETO, P. A. S.; BETTINI, J.; SATO, F.; DANTAS, S. O.; GALVAO, D. S.; UGARTE, D.. Surface effects on the mechanical elongation of AuCu nanowires: De-alloying and the formation of mixed suspended atomic chains. Journal of Applied Physics, v. 117, n. 9, MAR 7 2015. (13/08293-7)

OROSA, LOIS; AZEVEDO, RODOLFO; MUTLU, ONUR. AVPP: Address-first Value-next Predictor with Value Prefetching for Improving the Efficiency of Load Value Prediction. ACM TRANSACTIONS ON ARCHITECTURE AND CODE OPTIMIZATION, v. 15, n. 4, JAN 2019. (13/08293-7, 14/03840-2, 16/18929-4)

FRANCO PINHEIRO MOREIRA, PEDRO AUGUSTO; DE AGUIAR VEIGA, ROBERTO GOMES; DE KONING, MAURICE. Elastic constants of ice I-h as described by semi-empirical water models. Journal of Chemical Physics, v. 150, n. 4, JAN 28 2019. (16/23891-6, 14/10294-4, 13/08293-7)

OLIVEIRA CAMARGO, EDUARDO LEAL; NASCIMENTO, LEANDRO COSTA; SOLER, MARCAL; SALAZAR, MARCELA MENDES; LEPIKSON-NETO, JORGE; MARQUES, WESLEY LEORICY; ALVES, ANA; PEREIRA LIMA TEIXEIRA, PAULO JOSE; MIECZKOWSKI, PIOTR; CARAZZOLLE, MARCELO FALSARELLA; et al. Contrasting nitrogen fertilization treatments impact xylem gene expression and secondary cell wall lignification in Eucalyptus. BMC PLANT BIOLOGY, v. 14, SEP 28 2014. (13/08293-7)

PERIM, E.; PAUPITZ, R.; AUTRETO, P. A. S.; GALVAO, D. S.. Inorganic Graphenylene: A Porous Two-Dimensional Material With Tunable Band Gap. Journal of Physical Chemistry C, v. 118, n. 41, p. 23670-23674, OCT 16 2014. (13/08293-7, 11/17253-3)

PEREIRA, JORGE F.; ARAUJO, ELZA F.; BROMMONSCHENKEL, SERGIO H.; QUEIROZ, CASLEY B.; COSTA, GUSTAVO G. L.; CARAZZOLLE, MARCELO F.; PEREIRA, GONCALO A. G.; QUEIROZ, MARISA V.. MpSaci is a widespread gypsy-Ty3 retrotransposon highly represented by non-autonomous copies in the Moniliophthora perniciosa genome. CURRENT GENETICS, v. 61, n. 2, p. 185-202, MAY 2015. (13/08293-7)

ANDRADE, N. F.; AGUIAR, A. L.; KIM, Y. A.; ENDO, M.; FREIRE, P. T. C.; BRUNETTO, G.; GALVAO, D. S.; DRESSELHAUS, M. S.; SOUZA FILHO, A. G.. Linear Carbon Chains under High-Pressure Conditions. Journal of Physical Chemistry C, v. 119, n. 19, p. 10669-10676, MAY 14 2015. (13/08293-7)

CANO-MARQUEZ, ABRAHAM G.; SCHMIDT, WESLLER G.; RIBEIRO-SOARES, JENAINA; CANCADO, LUIZ GUSTAVO; RODRIGUES, WAGNER N.; SANTOS, ADELINA P.; FURTADO, CLASCIDIA A.; AUTRETO, PEDRO A. S.; PAUPITZ, RICARDO; GALVAO, DOUGLAS S.; et al. Enhanced Mechanical Stability of Gold Nanotips through Carbon Nanocone Encapsulation. SCIENTIFIC REPORTS, v. 5, JUN 17 2015. (13/08293-7, 11/17253-3, 13/09536-0)

GALVAO, GUSTAVO RODRIGUES; DIAS, ZANONI. On Alternative Approaches for Approximating the Transposition Distance. JOURNAL OF UNIVERSAL COMPUTER SCIENCE, v. 20, n. 9, p. 1259-1283, 2014. (13/08293-7)

PERIM, E.; PAUPITZ, R.; BOTARI, T.; GALVAO, D. S.. One-dimensional silicon and germanium nanostructures with no carbon analogues. Physical Chemistry Chemical Physics, v. 16, n. 44, p. 24570-24574, 2014. (13/08293-7, 11/17253-3)

LEI, SIDONG; WANG, XIFAN; LI, BO; KANG, JIAHAO; HE, YONGMIN; GEORGE, ANTONY; GE, LIEHUI; GONG, YONGJI; DONG, PEI; JIN, ZEHUA; et al. Surface functionalization of two-dimensional metal chalcogenides by Lewis acid-base chemistry. NATURE NANOTECHNOLOGY, v. 11, n. 5, p. 465+, MAY 2016. (13/08293-7)

ZANOTTO, LEANDRO; HEERDT, GABRIEL; SOUZA, PAULO C. T.; ARAUJO, GUIDO; SKAF, MUNIR S.. High performance collision cross section calculationHPCCS. Journal of Computational Chemistry, v. 39, n. 21, p. 1675-1681, AUG 5 2018. (13/08293-7, 16/04963-6, 12/24750-6)

BUSSE-WICHER, MARTA; LI, AN; SILVEIRA, RODRIGO L.; PEREIRA, CAROLINE S.; TRYFONA, THEODORA; GOMES, THIAGO C. F.; SKAF, MUNIR S.; DUPREE, PAUL. Evolution of Xylan Substitution Patterns in Gymnosperms and Angiosperms: Implications for Xylan Interaction with Cellulose. Plant Physiology, v. 171, n. 4, p. 2418-2431, AUG 2016. (13/08293-7, 14/10448-1, 15/25031-1)

CALZADO, FELIPE; PRATES, ERICA T.; GONCALVES, THIAGO A.; RUBIO, MARCELO V.; ZUBIETA, MARIANE P.; SQUINA, FABIO M.; SKAF, MUNIR S.; DAMASIO, ANDRE R. L.. Molecular basis of substrate recognition and specificity revealed in family 12 glycoside hydrolases. Biotechnology and Bioengineering, v. 113, n. 12, p. 2577-2586, DEC 2016. (13/08293-7, 14/06923-6, 12/20549-4, 13/24988-5, 14/23051-2)

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BORDA, EDGAR JOSUE LANDINEZ; CAI, WEI; DE KONING, MAURICE. Dislocation Structure and Mobility in hcp He-4. Physical Review Letters, v. 117, n. 4, JUL 20 2016. (13/08293-7)

PICELLI, R.; VAN DIJK, R.; VICENTE, W. M.; PAVANELLO, R.; LANGELAAR, M.; VAN KEULEN, F.. Topology optimization for submerged buoyant structures. ENGINEERING OPTIMIZATION, v. 49, n. 1, p. 1-21, JAN 2017. (13/08293-7, 11/09730-6)

RICCI, CLARISSE G.; SILVEIRA, RODRIGO L.; RIVALTA, IVAN; BATISTA, VICTOR S.; SKAF, MUNIR S.. Allosteric Pathways in the PPAR gamma-RXR alpha nuclear receptor complex. SCIENTIFIC REPORTS, v. 6, JAN 29 2016. (13/08293-7)

YUYAMA, PRISCILA MARY; REIS JUNIOR, OSVALDO; IVAMOTO, SUZANA TIEMI; DOMINGUES, DOUGLAS SILVA; CARAZZOLLE, MARCELO FALSARELLA; GUIMARAES PEREIRA, GONCALO AMARANTE; CHARMETANT, PIERRE; LEROY, THIERRY; PROTASIO PEREIRA, LUIZ FILIPE. Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits. Molecular Genetics and Genomics, v. 291, n. 1, p. 323-336, FEB 2016. (13/08293-7)

BOTARI, TIAGO; PAUPITZ, RICARDO; DA SILVA AUTRETO, PEDRO ALVES; GALVAO, DOUGLAS S.. Graphene healing mechanisms: A theoretical investigation. Carbon, v. 99, p. 302-309, APR 2016. (13/08293-7, 14/15521-9)

VICENTE, W. M.; ZUO, Z. H.; PAVANELLO, R.; CALIXTO, T. K. L.; PICELLI, R.; XIE, Y. M.. Concurrent topology optimization for minimizing frequency responses of two-level hierarchical structures. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, v. 301, p. 116-136, APR 1 2016. (13/08293-7, 11/09730-6, 13/20022-9)

BORGES, DAIANE DAMASCENO; MAURIN, GUILLAUME; GALVAO, DOUGLAS S.. Design of Porous Metal-Organic Frameworks for Adsorption Driven Thermal Batteries. MRS ADVANCES, v. 2, n. 9, p. 519-524, 2017. (13/08293-7, 15/14703-9)

JAQUES, YGOR M.; GALVAO, DOUGLAS S.. Nanodroplets Behavior on Graphdiyne Membranes. MRS ADVANCES, v. 2, n. 29, p. 1551-1556, 2017. (13/08293-7)

SPLUGUES, VINICIUS; DA SILVA AUTRETO, PEDRO ALVES; GALVAO, DOUGLAS S.. Hydrogenation Dynamics of Biphenylene Carbon (Graphenylene) Membranes. MRS ADVANCES, v. 2, n. 29, p. 1571-1576, 2017. (13/08293-7, 14/24547-1)

JAQUES, YGOR M.; BRUNETTO, GUSTAVO; GALVAO, DOUGLAS S.. Nanodroplets Impacting on Graphene. MRS ADVANCES, v. 1, n. 10, p. 675-680, 2016. (13/08293-7)

SUSARLA, SANDHYA; MANIMUNDA, PRAVEENA; JAQUES, YGOR M.; HACHTEL, JORDAN A.; IDROBO, JUAN C.; ASIF, S. A. SYED; GALVAO, DOUGLAS S.; TIWARY, CHANDRA SEKHAR; AJAYAN, PULICKEL M.. Strain-Induced Structural Deformation Study of 2D MoxW(1-x) S-2. ADVANCED MATERIALS INTERFACES, v. 6, n. 5, MAR 8 2019. (16/12341-5, 13/08293-7)

SANTOS MIRANDA, GUILHERME HENRIQUE; LINTZMAYER, CARLA NEGRI; DIAS, ZANONI. Sorting Permutations by lambda-Operations. JOURNAL OF UNIVERSAL COMPUTER SCIENCE, v. 25, n. 2, p. 98-121, 2019. (17/12646-3, 13/08293-7, 15/11937-9, 16/14132-4)

OLIVEIRA, ELIEZER F.; AUTRETO, PEDRO A. S.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.. On the mechanical properties of protomene: A theoretical investigation. COMPUTATIONAL MATERIALS SCIENCE, v. 161, p. 190-198, APR 15 2019. (14/24547-1, 16/18499-0, 13/08293-7)

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CAMPOS, LIVIA WEIJENBORG; ZENATTI, PRISCILA PINI; PISSINATO, LEONARDO GRANATO; RODRIGUES, GISELE O. LIBANIO; ARTICO, LEONARDO LUIS; GUIMARAES, THAIS RAFAEL; ARCHANGELO, LETICIA FROHLICH; MARTINEZ, LEANDRO; BROOKS, ANDREW J.; YUNES, JOSE ANDRES. Oncogenic basic amino acid insertions at the extracellular juxtamembrane region of IL7RA cause receptor hypersensitivity. Blood, v. 133, n. 11, p. 1259-1263, MAR 14 2019. (12/12802-1, 14/20015-5, 10/16947-9, 13/08293-7)

DE ALMEIDA, BRENO VINCENZO; PAVANELLO, RENATO. Topology Optimization of the Thickness Profile of Bimorph Piezoelectric Energy Harvesting Devices. JOURNAL OF APPLIED AND COMPUTATIONAL MECHANICS, v. 5, n. 1, p. 113-127, WIN 2019. (18/00075-4, 13/08293-7)

CHININI, GUILHERME LUIZ; CUSTODIO, ROGERIO. Assessment of a composite method based on selected density functional theory methods and complete basis set extrapolation formulas. International Journal of Quantum Chemistry, v. 119, n. 10, MAY 15 2019. (13/08293-7, 17/11485-6)

DE OLIVEIRA, IVAN PIRES; LESCANO, CAROLINE HONAISER; DE NUCCI, GILBERTO. Q817G mutation in phosphodiesterase type 5: Conformational analysis and dissociation profile of the inhibitor Tadalafil. CHEMICAL BIOLOGY & DRUG DESIGN, v. 93, n. 4, p. 419-429, APR 2019. (13/08293-7, 13/05475-7, 10/16947-9)

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ROGÉRIO CUSTODIO. UMA FORMA SIMPLIFICADA DE DEDUZIR AS EQUAÇÕES DE HARTREE E HARTREE-FOCK. Química Nova, v. 38, n. 7, p. 995-1001, 2015-08-00. (13/08293-7)

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ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI. On the Complexity of Some Variations of Sorting by Transpositions. JOURNAL OF UNIVERSAL COMPUTER SCIENCE, v. 26, n. 9, p. 1076-1094, 2020. (13/08293-7, 15/11937-9, 19/27331-3, 17/12646-3)

FONSECA, ALEXANDRE F.; GALVAO, DOUGLAS S.. Graphene-based nanoscale version of da Vinci's reciprocal structures. COMPUTATIONAL MATERIALS SCIENCE, v. 187, FEB 1 2021. (13/08293-7, 18/02992-4)

LASCANE, LEONARDO G.; OLIVEIRA, ELIEZER F.; GALVAO, DOUGLAS S.; BATAGIN-NETO, AUGUSTO. Polyfuran-based chemical sensors: Identification of promising derivatives via DFT calculations and fully atomistic reactive molecular dynamics. EUROPEAN POLYMER JOURNAL, v. 141, DEC 5 2020. (16/18499-0, 13/08293-7, 19/07157-9, 16/11358-1)

LOPES GROTTO, CARLOS GUILHERME; GOMES COLARES, CARLA JOVANIA; LIMA, DANIEL RODRIGUES; PEREIRA, DOUGLAS HENRIQUE; DO VALE, AILTON TEIXEIRA. Energy potential of biomass from two types of genetically improved rice husks in Brazil: A theoretical-experimental study. BIOMASS & BIOENERGY, v. 142, NOV 2020. (13/08293-7, 17/11485-6)

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PATINO-NARINO, EDGAR A.; GALVIS, ANDRES F.; PAVANELLO, RENATO; GONGORA-RUBIO, MARIO R.. Modeling of co-axial bubbles coalescence under moderate Reynolds regimes: A Bi-phase SPH approach. INTERNATIONAL JOURNAL OF MULTIPHASE FLOW, v. 162, p. 35-pg., 2023-02-16. (13/08293-7, 21/05931-9, 17/50343-2)

HAMADA, GABRIEL Y. R.; WOLF, WILLIAM R.; PITZ, DIOGO B.; ALVES, LEONARDO S. DE B.. Stability and receptivity analyses of mixed convection in unstably stratified horizontal boundary layers. JOURNAL OF FLUID MECHANICS, v. 961, p. 18-pg., 2023-04-17. (13/08293-7, 21/06448-0, 22/00464-6)

PEREIRA JUNIOR, M. L.; DA CUNHA, W. F.; DE SOUSA JUNIOR, R. T.; NZE, G. D. AMVAME; GALVAO, D. S.; RIBEIRO JUNIOR, L. A.. n the mechanical properties and fracture patterns of the nonbenzenoid carbon allotrope (biphenylene network): a reactive molecular dynamics stud. NANOSCALE, v. 14, n. 8, p. 3200-3211, FEB 24 2022. (13/08293-7)

MARTINEZ, LEANDRO. omplexMixtures.jl: Investigating the structure of solutions of complex-shaped molecules from a solvent-shell perspectiv. JOURNAL OF MOLECULAR LIQUIDS, v. 347, FEB 1 2022. (10/16947-9, 18/14274-9, 18/24293-0, 13/08293-7)

RICCIARDI, TULIO R.; WOLF, WILLIAM R.; TAIRA, KUNIHIKO. ransition, intermittency and phase interference effects in airfoil secondary tones and acoustic feedback loo. JOURNAL OF FLUID MECHANICS, v. 937, MAR 2 2022. (19/20437-0, 18/11835-0, 21/06448-0, 13/08293-7)

BALDASSIN, ALEXANDRO; MURARI, RAFAEL; DE CARVALHO, JOAO P. L.; ARAUJO, GUIDO; CASTRO, DANIEL; BARRETO, JOAO; ROMANO, PAOLO; MALAWSKI, M; RZADCA, K. NV-PhTM: An Efficient Phase-Based Transactional System for Non-volatile Memory. EURO-PAR 2020: PARALLEL PROCESSING, v. 12247, p. 16-pg., 2020-01-01. (13/08293-7, 18/15519-5, 19/10471-7, 16/15337-9)

PACHECO, I. S.; TOME ALVES, ANA GABRIELA; SANTANA, LUCAS CHUMAN; MUNDIM RIBEIRO, ELAINE ANGELICA; CANOBRE, SHEILA CRISTINA; AMARAL, FABIO AUGUSTO. Performance of cationic hemicelluloses arising from peanut shell residue from agroindustry in application as primary coagulant in physical-chemical treatment of dairy wastewater. JOURNAL OF WATER PROCESS ENGINEERING, v. 47, p. 13-pg., 2022-02-24. (13/08293-7, 19/12294-5)

BRITO, KLAIRTON LIMA; OLIVEIRA, ANDRE RODRIGUES; ALEXANDRINO, ALEXSANDRO OLIVEIRA; DIAS, ULISSES; DIAS, ZANONI; JIN, L; DURAND, D. A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions. COMPARATIVE GENOMICS (RECOMB-CG 2022), v. 13234, p. 16-pg., 2022-01-01. (19/27331-3, 13/08293-7, 15/11937-9)

SPERA, MARCELLE B. M.; BRAGA, FLAVIA N.; BARTOLOMEU, RODRIGO A. C.; ECONOMOU, IOANNIS G.; FRANCO, LUIS F. M.. Diffusion of fluids confined in carbonate minerals: A molecular dynamics simulation study for carbon dioxide and methane-ethane mixture within calcite. FUEL, v. 325, p. 9-pg., 2022-10-01. (13/08293-7, 18/02713-8)

PICCOLI, VINICIUS; MARTINEZ, LEANDRO. Ionic liquid solvation of proteins in native and denatured states. JOURNAL OF MOLECULAR LIQUIDS, v. 363, p. 15-pg., 2022-07-30. (20/04916-3, 13/08293-7, 18/24293-0, 18/14274-9, 10/16947-9)

MOREIRA, FARNEY COUTINHO; WOLF, WILLIAM ROBERTO; AZEVEDO, JOAO LUIZ F.. Thermal analysis of hypersonic reactive flows on the SARA Brazilian satellite reentry trajectory. Journal of the Brazilian Society of Mechanical Sciences and Engineering, v. 44, n. 1, JAN 2022. (13/08293-7, 21/02705-8, 13/07375-0)

LEONARDO VIANA DAS CHAGAS LIMA; NELSON HENRIQUE MORGON. ANÁLISE GRÁFICA DO DESEMPENHO DE MÉTODOS COMPUTACIONAIS NO ESTUDO DE PROPRIEDADES TERMOQUÍMICAS. Química Nova, v. 43, n. 3, p. 291-299, 2020-06-01. (13/08293-7, 19/12294-5)

TOVO, OTAVIO AUGUSTO; DO VALE LIMA, LUIS FILIPE; LABAKI, JOSUE; DAMASCENO, DANIELA ANDRADE; MESQUITA, EUCLIDES. Iterative coupling procedure applied to the transient response of dynamic soil-structure systems. LATIN AMERICAN JOURNAL OF SOLIDS AND STRUCTURES, v. 17, n. 8, 2020. (13/08293-7)

CHO, KYUNG HO; BORGES, D. DAMASCENO; LEE, U-HWANG; LEE, JI SUN; YOON, JI WOONG; CHO, SUNG JUNE; PARK, JAEDEUK; LOMBARDO, WALTER; MOON, DOHYUN; SAPIENZA, ALESSIO; et al. Rational design of a robust aluminum metal-organic framework for multi-purpose water-sorption-driven heat allocations. NATURE COMMUNICATIONS, v. 11, n. 1, OCT 9 2020. (13/08293-7)

PUTHIRATH, ANAND B.; OLIVEIRA, ELIEZER F.; GAO, GUANHUI; CHAKINGAL, NITHYA; KANNAN, HARIKISHAN; LI, CHENXI; ZHANG, XIANG; BISWAS, ABHIJIT; NEUPANE, MAHESH R.; PATE, BRADFORD B.; et al. Oxygenation of Diamond Surfaces via Hummer's Method. CHEMISTRY OF MATERIALS, v. 33, n. 13, p. 4977-4987, JUL 13 2021. (13/08293-7, 19/07157-9, 16/18499-0)

FERREIRA COSTA, ADAO MARCOS; SILVA, THIAGO SOARES; CAMARGO OH, LAURA BEATRIZ; PEREIRA, DOUGLAS HENRIQUE. Interaction of Fe2+, Co2+, Ni2+, Cu2+, Zn2+, Pb2+, and Cr3+ metal ions on B12N12 fullerene-like cages: a theoretical study. MONATSHEFTE FUR CHEMIE, v. 152, n. 8, AUG 2021. (13/08293-7, 17/11485-6)

ALHASHIM, SALMA H.; BHATTACHARYYA, SOHINI; TROMER, RAPHAEL; KABBANI, AHMAD; BABU, GANGULI; OLIVEIRA, ELIEZER FERNANDO; GALVAO, DOUGLAS S.; AJAYAN, PULICKEL M.. Mechanistic Study of Lithium-Ion Battery Cathode Recycling Using Deep Eutectic Solvents. ACS SUSTAINABLE CHEMISTRY & ENGINEERING, v. 11, n. 18, p. 9-pg., 2023-04-26. (13/08293-7)

SIQUEIRA, GABRIEL; ALEXANDRINO, ALEXSANDRO OLIVEIRA; DIAS, ZANONI. Signed rearrangement distances considering repeated genes, intergenic regions, and indels. JOURNAL OF COMBINATORIAL OPTIMIZATION, v. 46, n. 2, p. 36-pg., 2023-09-01. (21/13824-8, 13/08293-7, 17/12646-3, 15/11937-9)

CRUZ, ALLEFE BARBOSA; DE BRITO, LIVIA GABRIELA; LEAL, PAULO VITOR BRANDAO; RAMOS, WELYSON TIANO DOS SANTOS; PEREIRA, DOUGLAS HENRIQUE. Intramolecular hydrogen bonds interactions in the isomers of the bilirubin molecule: DFT and QTAIM analysis. Journal of Molecular Modeling, v. 29, n. 10, p. 9-pg., 2023-10-01. (13/08293-7, 17/11485-6)

NAPOLI, OTAVIO OLIVEIRA; PINTON, GUSTAVO CIOTTO; BORIN, EDSON; IEEE COMP SOC. CLAP-Bot: a framework for automatic optimization of high-performance elastic applications on the Clouds. 2021 IEEE 33RD INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING WORKSHOPS (SBAC-PADW 2021), v. N/A, p. 7-pg., 2021-01-01. (13/08293-7)

BISSOTO, ALCEU; VALLE, EDUARDO; AVILA, SANDRA; IEEE COMP SOC. GAN-Based Data Augmentation and Anonymization for Skin-Lesion Analysis: A Critical Review. 2021 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGITION WORKSHOPS (CVPRW 2021), v. N/A, p. 10-pg., 2021-01-01. (19/19619-7, 13/08293-7)

DO ROSARIO, VANDERSON MARTINS; DA SILVA, ANDERSON FAUSTINO; ZANELLA, ANDRE FELIPE; NAPOLI, OTAVIO O.; BORIN, EDSON. Fast selection of compiler optimizations using performance prediction with graph neural networks. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, v. N/A, p. 13-pg., 2022-03-16. (13/08293-7)

MARONE, MARINA PUPKE; ZANELI CAMPANARI, MARIA FERNANDA; RAYA, FABIO TRIGO; GUIMARAES PEREIRA, GONCALO AMARANTE; CARAZZOLLE, MARCELO FALSARELLA. Fungal communities represent the majority of root-specific transcripts in the transcriptomes of Agave plants grown in semiarid regions. PeerJ, v. 10, p. 24-pg., 2022-05-02. (13/08293-7, 20/02524-0)

MARTINS DO ROSARIO, VANDERSON; FAUSTINO DA SILVA, ANDERSON; APARECIDA SILVA CAMACHO, THAIS; NAPOLI, OTAVIO O.; BRETERNITZ, MAURICIO; BORIN, EDSON. Smart selection of optimizations in dynamic compilers. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, v. 33, n. 18, SI, SEP 25 2021. (13/08293-7)

DE MORAIS, GUILHERME DE SOUZA TAVARES; CUSTODIO, ROGERIO. Assessment of a numeric variational method for the solution of confined multielectron atoms. Journal of Molecular Modeling, v. 27, n. 7, JUL 2021. (13/08293-7, 17/11485-6)

MORGON, NELSON H.; GRANDINI, GIULIA S.; YOGUIM, MAURICIO I.; PORTO, CAIO M.; SANTANA, LUCAS C.; BISWAS, SRIJIT; DE SOUZA, AGUINALDO R.. Potential activity of Linezolid against SARS-CoV-2 using electronic and molecular docking study. Journal of Molecular Modeling, v. 27, n. 8, AUG 2021. (13/08293-7, 15/22338-9)

TAVARES, WILLIAM F. C.; MIRANDA ASSIS, MARCIO ROBERTO; BORIN, EDSON; IEEE COMP SOC. Quantifying and detecting HPC resource wastage in cloud environments. 2021 IEEE 33RD INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING WORKSHOPS (SBAC-PADW 2021), v. N/A, p. 6-pg., 2021-01-01. (13/08293-7)

RIBEIRO, INGRID DE ALMEIDA; DE KONING, MAURICE. Non-Newtonian flow effects in supercooled water. PHYSICAL REVIEW RESEARCH, v. 2, n. 2, APR 6 2020. (13/08293-7, 16/23891-6)

OLIVEIRA, ANDRE RODRIGUES; ALEXANDRINO, ALEXSANDRO OLIVEIRA; JEAN, GERALDINE; FERTIN, GUILLAUME; DIAS, ULISSES; DIAS, ZANONI. Approximation algorithms for sorting by k-cuts on signed permutations. JOURNAL OF COMBINATORIAL OPTIMIZATION, v. 45, n. 1, p. 30-pg., 2023-01-01. (19/27331-3, 13/08293-7, 15/11937-9)

DE KONING, MAURICE; CAI, WEI; CAZORLA, CLAUDIO; BORONAT, JORDI. Absence of Off-Diagonal Long-Range Order in hcp 4He Dislocation Cores. Physical Review Letters, v. 130, n. 1, p. 6-pg., 2023-01-06. (16/23891-6, 13/08293-7)

PINHEIRO, PEDRO OLIMPIO; ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; DE SOUZA, CID CARVALHO; DIAS, ZANONI; SETUBAL, JC; SILVA, WM. Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems. ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, BSB 2020, v. 12558, p. 12-pg., 2020-01-01. (19/25410-3, 13/08293-7, 19/27331-3, 17/12646-3, 15/11937-9)

OLIVEIRA, ELIEZER; LI, CHENXI; ZHANG, XIANG; PUTHIRATH, ANAND; NEUPANE, MAHESH R.; WEIL, JAMES; BIRDWELL, A. GLEN; IVANOV, TONY; KONG, SEOYUN; GREY, TIA; et al. Stability of oxygenated groups on pristine and defective diamond surfaces. RS ADVANCE, v. 7, n. 25-26, p. 4-pg., 2022-02-23. (16/18499-0, 13/08293-7, 19/07157-9)

SCHMID, RAFAEL F.; PISANI, FLAVIA; CACERES, EDSON N.; BORIN, EDSON. An evaluation of fast segmented sorting implementations on GPUs. PARALLEL COMPUTING, v. 110, p. 16-pg., 2022-01-29. (13/08293-7)

ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; JEAN, GERALDINE; FERTIN, GUILLAUME; DIAS, ULISSES; DIAS, ZANONI. Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. JOURNAL OF COMPUTATIONAL BIOLOGY, v. 30, n. 8, p. 16-pg., 2023-05-24. (13/08293-7, 19/27331-3, 15/11937-9)

BRITO, KLAIRTON LIMA; ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI. Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, v. 20, n. 3, p. 13-pg., 2023-05-01. (13/08293-7, 19/27331-3, 15/11937-9)

TROMER, R. M.; PEREIRA, M. L.; RIBEIRO, L. A.; GALVAO, D. S.. 2D Hemiporphyrazine: A new nanoporous material. PHYSICA E-LOW-DIMENSIONAL SYSTEMS & NANOSTRUCTURES, v. 150, p. 8-pg., 2023-03-28. (13/08293-7)

PACCOTACYA-YANQUE, ROSA Y. G.; BISSOTO, ALCEU; AVILA, SANDRA. Are Explanations Helpful? A Comparative Analysis of Explainability Methods in Skin Lesion Classifiers. 2024 20TH INTERNATIONAL SYMPOSIUM ON MEDICAL INFORMATION PROCESSING AND ANALYSIS, SIPAIM 2024, v. N/A, p. 5-pg., 2024-01-01. (23/12086-9, 20/09838-0, 13/08293-7)

MOREIRA, FARNEY COUTINHO; WOLF, WILLIAM ROBERTO; AZEVEDO, JOAO LUIZ F.. Numerical Simulations of Hypersonic Flows over the Fire II Capsule: Impact of Mesh Resolution and Boundary Conditions on Convective Heat Transfer. AIAA SCITECH 2023 FORUM, v. N/A, p. 12-pg., 2023-01-01. (21/02705-8, 13/08293-7, 13/07375-0)

EHRLICH, HERMANN; MIKSIK, IVAN; TSURKAN, MIKHAIL V.; SIMON, PAUL; PORZUCEK, FILIP; RYBKA, JAKUB DALIBOR; MANKOWSKA, MONIKA; GALLI, ROBERTA; VIEHWEGER, CHRISTINE; BRENDLER, ERICA; et al. Discovery of mammalian collagens I and III within ancient poriferan biopolymer spongin. NATURE COMMUNICATIONS, v. 16, n. 1, p. 13-pg., 2025-03-13. (13/08293-7, 18/18503-2, 22/04695-2, 22/04703-5, 22/03410-4)

ZUCATTI, VICTOR; WOLF, WILLIAM R.. A numerical investigation of data-driven closure techniques for POD-Galerkin reduced order models. AIAA AVIATION 2022 FORUM, v. N/A, p. 13-pg., 2022-01-01. (13/08293-7, 21/06448-0, 18/11410-9)

ORENHA, RENATO PEREIRA; SILVA, GRAZIELE CAPPATO GUERRA; MORGON, NELSON HENRIQUE; CARAMORI, GIOVANNI FINOTO; PARREIRA, RENATO LUIS TAME. Can the relative positions (cis-trans) of ligands really modulate the coordination of NO in ruthenium nitrosyl complexes?. NEW JOURNAL OF CHEMISTRY, v. 45, n. 3, p. 1658-1666, JAN 21 2021. (13/08293-7, 19/00543-0, 11/07623-8, 15/22338-9, 17/24856-2)

TRUONG, BAO N.; BORGES, DAIANE D.; PARK, JAEDEUK; LEE, JI SUN; JO, DONGHUI; CHANG, JONG-SAN; CHO, SUNG JUNE; MAURIN, GUILLAUME; CHO, KYUNG HO; LEE, U-HWANG. Tuning Hydrophilicity of Aluminum MOFs by a Mixed-Linker Strategy for Enhanced Performance in Water Adsorption-Driven Heat Allocation Application. ADVANCED SCIENCE, v. 10, n. 21, p. 8-pg., 2023-05-13. (13/08293-7)

KRUGER, KLEBER; PANNAIN, RICARDO; AZEVEDO, RODOLFO. Using Logging-on-Write to Improve Non-Volatile Memory Checkpoints via Processing-in-Memory. 2023 IEEE 35TH INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING, SBAC-PAD, v. N/A, p. 10-pg., 2023-01-01. (19/26702-8, 13/08293-7)

CUNHA, DANIEL CANDELORO; PAVANELLO, RENATO. Finite variation sensitivity analysis in the design of isotropic metamaterials through discrete topology optimization. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING, v. 125, n. 19, p. 38-pg., 2024-06-27. (13/08293-7, 19/19237-7)

MOURA, ALIRIO; IPAVES, BRUNO; GALVAO, DOUGLAS S.; AUTRETO, PEDRO ALVES DA SILVA. Ballistic properties of highly stretchable graphene kirigami pyramid. COMPUTATIONAL MATERIALS SCIENCE, v. 232, p. 5-pg., 2023-11-30. (13/08293-7)

DA SILVA, PAMELLA C. C.; MARTINEZ, LEANDRO. Intrinsically Disordered Malaria Antigens: An Overview of Structures, Dynamics and Molecular Simulation Opportunities. Journal of the Brazilian Chemical Society, v. 35, n. 10, p. 21-pg., 2024-10-01. (13/08293-7, 18/24293-0)

MATIAS, E. G. DE CARVALHO; BEZERRA, K. S.; COSTA, A. H. LIMA; CLEMENTE JR, W. S.; OLIVEIRA, J. I. N.; RIBEIRO JR, L. A.; GALVAO, D. S.; FULCO, U. L.. Quantum biochemical analysis of the TtgR regulator and effectors. SCIENTIFIC REPORTS, v. 14, n. 1, p. 12-pg., 2024-04-12. (13/08293-7)

MARCONDES, REBECA; RICCIARDI, TULIO; WOLF, WILLIAM. Spatio-temporal data reconstruction analysis via kernel-based proper orthogonal decomposition. AIAA SCITECH 2021 FORUM, v. N/A, p. 15-pg., 2021-01-01. (13/07375-0, 13/08293-7)

DA SILVA, BETANIA E. R.; NAPOLI, OTAVIO O.; DELGADO, J. V.; ROCHA, ANDERSON R.; BOCCATO, LEVY; BORIN, EDSON. Impact of Pre-training Datasets on Human Activity Recognition with Contrastive Predictive Coding. INTELLIGENT SYSTEMS, BRACIS 2024, PT III, v. 15414, p. 15-pg., 2025-01-01. (13/08293-7)

DEDA, TARCISIO C.; WOLFT, WILLIAM R.. Airfoil Vortex Shedding Noise Reduction via Extremum-Seeking Control with Moving Actuation. AIAA SCITECH 2021 FORUM, v. N/A, p. 11-pg., 2021-01-01. (19/19179-7, 13/08293-7)

CECCATO, RODRIGO; CLETO, JHONATAN; LEITE, GUSTAVO; RIGO, SANDRO; MONSALVE DIAZ, JOSE M.; YVIQUEL, HERVE. Spinner: Enhancing HPC Experimentation with a Streamlined Parameter Sweep Tool. 2024 INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING WORKSHOPS, SBAC-PADW, v. N/A, p. 11-pg., 2024-01-01. (24/04232-8, 19/17874-0, 13/08293-7, 20/08475-1)

MOREIRA, FARNEY COUTINHO; LEVIN, DEBORAH A.; THIRANI, SHUBHAM; WOLF, WILLIAM ROBERTO; AZEVEDO, JODO LUIZ F.. A Study on the Impact of Radiative Heat Transfer for Hypersonic Nonequilibrium Flows over a Cylinder. AIAA SCITECH 2024 FORUM, v. N/A, p. 12-pg., 2024-01-01. (22/07604-8, 13/07375-0, 13/08293-7, 21/02705-8)

MOREIRA, FARNEY COUTINHO; WOLF, WILLIAM ROBERTO; AZEVEDO, JODO LUIZ F.. A Study on the Impact of Mesh Resolution and Diffusion Terms on Thermochemical Non-Equilibrium Flows. AIAA AVIATION 2023 FORUM, v. N/A, p. 16-pg., 2023-01-01. (22/07604-8, 13/07375-0, 13/08293-7, 21/02705-8)

MIOTTO, RENATO; WOLFT, WILLIAM. Prediction of airfoil dynamic stall response using convolutional neural networks. AIAA AVIATION 2023 FORUM, v. N/A, p. 10-pg., 2023-01-01. (13/07375-0, 13/08293-7, 22/09196-4, 21/06448-0)

ALVARENGA E SILVA, LUCAS FERNANDO; DOS SANTOS, SAMUEL FELIPE; SEBE, NICU; ALMEIDA, JURANDY. Beyond the known: Enhancing Open Set Domain Adaptation with unknown exploration. PATTERN RECOGNITION LETTERS, v. 189, p. 8-pg., 2025-02-28. (21/13348-1, 13/08293-7, 20/08770-3, 24/04500-2, 23/17577-0, 19/17874-0, 23/03328-9, 17/25908-6)

LUI, HUGO F. S.; RICCIARDI, TULIO R.; WOLF, WILLIAM R.; CARLOS, A. J. B., JR.. Comparison of Shock-Boundary Layer Interactions in Adiabatic and Isothermal Supersonic Turbine Cascades. AIAA AVIATION 2022 FORUM, v. N/A, p. 8-pg., 2022-01-01. (13/08293-7, 21/06448-0, 19/26196-5)

DEDA, TARCISIO C.; WOLF, WILLIAM R.. Design of closed-loop control strategies for fluid flows using neural network surrogate models. AIAA AVIATION 2022 FORUM, v. N/A, p. 11-pg., 2022-01-01. (13/08293-7, 19/19179-7)

HECKER, NICOLAS; NAPOLI, OTAVIO O.; DELGADO, JAIME; ROCHA, ANDERSON R.; BOCCATO, LEVY; BORIN, EDSON. An Analysis of Time-Frequency Consistency in Human Activity Recognition. INTELLIGENT SYSTEMS, BRACIS 2024, PT III, v. 15414, p. 16-pg., 2025-01-01. (13/08293-7)

DE SOUZA, WILLIAM M.; FUMAGALLI, MARCILIO J.; DE LIMA, SHIRLENE T. S.; PARISE, PIERINA L.; CARVALHO, DEYSE C. M.; HERNANDEZ, CRISTIAN; DE JESUS, RONALDO; DELAFIORI, JEANY; CANDIDO, DARLAN S.; CARREGARI, VICTOR C.; et al. Pathophysiology of chikungunya virus infection associated with fatal outcomes. CELL HOST & MICROBE, v. 32, n. 4, p. 26-pg., 2024-04-10. (19/24251-9, 17/26908-0, 22/04420-3, 18/14389-0, 19/27333-6, 19/05155-9, 18/17176-8, 17/25588-1, 19/00098-7, 13/08293-7, 19/05718-3)

NAKAHATA, DOUGLAS H.; CORSINO, CARLOS E. S. P.; DE MORAIS, GUILHERME C.; PEREIRA, GABRIELE M.; CRUZ, ALLEFE B.; PEREIRA, DOUGLAS HENRIQUE; CASSANI, NATASHA M.; RUIZ, URIEL ENRIQUE A.; SANTOS, IGOR A.; JARDIM, ANA CAROLINA G.; et al. Synthesis, Characterization and in vitro Evaluation of 4-(2-Aminoethyl)benzenesulfonamide Schiff Bases against Arboviruses. Journal of the Brazilian Chemical Society, v. 35, n. 11, p. 12-pg., 2024-01-01. (21/10265-8, 13/08293-7, 15/20882-3, 17/11485-6)

DA SILVA, ANDERSON FAUSTINO; BORIN, EDSON; QUINTAO PEREIRA, FERNANDO M.; NAPOLI, OTAVIO OLIVEIRA; DO ROSARIO, VANDERSON MARTINS. New Optimization Sequences for Code-Size Reduction for the LLVM Compilation Infrastructure. 25TH BRAZILIAN SYMPOSIUM ON PROGRAMMING LANGUAGES, SBLP 2021, v. N/A, p. 8-pg., 2021-01-01. (13/08293-7)

TROMER, RAPHAEL M.; FELIX, ISAAC M.; FELIX, LEVI C.; MACHADO, LEONARDO D.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.. Hydrogen atom/molecule adsorption on 2D metallic porphyrin: A first-principles study. Chemical Physics, v. 577, p. 8-pg., 2023-11-22. (13/08293-7)

ALEXANDRINO, ALEXSANDRO OLIVEIRA; SIQUEIRA, GABRIEL; BRITO, KLAIRTON LIMA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI. Block Interchange and Reversal Distance on Unbalanced Genomes. ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, BSB 2023, v. 13954, p. 13-pg., 2023-01-01. (15/11937-9, 21/13824-8, 13/08293-7, 22/13555-0, 19/27331-3)

BISSOTO, ALCEU; BARATA, CATARINA; VALLE, EDUARDO; AVILA, SANDRA. Even small correlation and diversity shifts pose dataset-bias issues. PATTERN RECOGNITION LETTERS, v. 179, p. 7-pg., 2024-02-07. (13/08293-7, 19/19619-7, 22/09606-8, 20/09838-0)

GOMES, ELLANE JACQUELINE COELHO MOREIRA; MACEDO, VINICIUS SOUZA; PEREIRA, ANNA KARLA DOS SANTOS; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Theoretical study of the adsorption capacity of potentially toxic Cd²⁺, Pb²⁺, and Hg²⁺ ions in hemicellulose matrices. International Journal of Biological Macromolecules, v. 258, p. 9-pg., 2023-12-22. (13/08293-7, 17/11485-6)

BASTOS, LEONARDO, V; AMBEKAR, RUSHIKESH S.; TIWARY, CHANDRA S.; GALVAO, DOUGLAS S.; WOELLNER, CRISTIANO F.. Mechanical energy absorption of architecturally interlocked petal-schwarzites. CARBON TRENDS, v. 13, p. 10-pg., 2023-10-14. (13/08293-7)

MOREIRA, FARNEY COUTINHO; WOLF, WILLIAM ROBERTO; AZEVEDO, JOAO LUIZ F.. Convective Heat Transfer in Hypersonic Non-Equilibrium Reactive Flows Over the Fire II Reentry Capsule. AIAA SCITECH 2022 FORUM, v. N/A, p. 18-pg., 2022-01-01. (21/02705-8, 13/08293-7, 13/07375-0)

RIBEIRO, BERNARDO LUIZ; DANTAS, CAYAN; WOLF, WILLIAM. Intermittency of a transitional airfoil flow with laminar separation bubble solved by the lattice-Boltzmann method. AEROSPACE SCIENCE AND TECHNOLOGY, v. 158, p. 15-pg., 2025-01-02. (13/08293-7, 21/06448-0, 23/08768-7)

CAETANO, CARLOS; FERRAZ RIBEIRO, LEO SAMPAIO; LARANJEIRA, CAMILA; DOS SANTOS, GABRIEL OLIVEIRA; BARROS, ARTUR; PETRUCCI, CAIO; DOS SANTOS, ANDREZA APARECIDA; MACEDO, JOAO; CARVALHO, GIL; BENEVENUTO, FABRICIO; et al. Mastering Scene Understanding: Scene Graphs to the Rescue. 2024 37TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES, SIBGRAPI 2024, v. N/A, p. 6-pg., 2024-01-01. (24/01210-3, 24/09372-2, 20/09838-0, 22/14690-8, 24/09375-1, 13/08293-7, 23/12086-9)

PEREIRA, MARCELO L.; DOS SANTOS, EMANUEL J. A.; RIBEIRO, LUIZ A.; GALVAO, DOUGLAS S.. How does goldene stack?. MATERIALS HORIZONS, v. 12, n. 4, p. 12-pg., 2025-01-21. (13/08293-7)

PEREIRA, GABRIEL CESAR; CUSTODIO, ROGERIO. A Preliminary Neural Network-Based Composite Method for Accurate Prediction of Enthalpies of Formation. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v. 20, n. 24, p. 9-pg., 2024-12-12. (13/08293-7, 17/11485-6)

SILVA, LEANDRO J.; WOLF, WILLIAM R.. Pressure gradient effects on coherent structures and anisotropy of a turbulent boundary layer over a NACA0012 airfoil at 12° angle of attack. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 9-pg., 2024-01-01. (13/08293-7, 22/00256-4, 21/06448-0)

QUISPE, JUAN GOMEZ; GALVAO, DOUGLAS SOARES; AUTRETO, PEDRO ALVES DA SILVA. Exploring the Electronic and Mechanical Properties of TPDH Nanotube: Insights from Ab Initio and Classical Molecular Dynamics Simulations. ACS OMEGA, v. 9, n. 51, p. 12-pg., 2024-12-11. (13/08293-7)

DE FRANCA, MORGANA MULLER; SCHMIDT, ARIANE; SANTOS, AELTON BAPTISTA; DOS SANTOS, TALITHA RAMOS CANABARRA; ZARBIN, ALDO JOSE GORGATTI; WOELLNER, CRISTIANO FRANCISCO; WOUK, LUANA; ROMAN, LUCIMARA STOLZ. Lamellar metal oxide and organic hybrid sensor for room temperature alcohol gas detection. Journal of Materials Science, v. 60, n. 2, p. 16-pg., 2024-12-26. (19/17874-0, 13/08293-7)

MOREIRA, FARNEY COUTINHO; WOLF, WILLIAM ROBERTO; AZEVEDO, JOAO LUIZ F.. Investigation of Thermodynamic Non-Equilibrium in Hypersonic Flows Over the Mars Pathfinder Capsule. AIAA SCITECH 2021 FORUM, v. N/A, p. 16-pg., 2021-01-01. (13/08293-7, 13/07375-0)

MIOTTO, RENATO; WOLF, WILLIAM; GAITONDE, DATTA; VISBAL, MIGUEL. Pitch-plunge Equivalence in Dynamic Stall of Ramp Motion Airfoils. AIAA AVIATION 2021 FORUM, v. N/A, p. 14-pg., 2021-01-01. (13/08293-7, 17/10795-1, 13/07375-0, 19/02335-6)

AMBEKAR, RUSHIKESH S.; BASTOS, LEONARDO, V; GALVAO, DOUGLAS S.; TIWARY, CHANDRA S.; WOELLNER, CRISTIANO F.. Material extrusion of topologically engineered architecture inspired by carbon-based interlocked petal-schwarzites. CARBON TRENDS, v. 17, p. 10-pg., 2024-11-28. (13/08293-7)

NAKASU, PEDRO Y. S.; PICCOLI, VINICIUS; OVEJERO-PEREZ, ANTONIO; KUMAR, PRIYANKA; AL GHATTA, AMIR; MELANIE, SUSIANA; POLESCA, CARINY; MARTINEZ, LEANDRO; HALLETT, JASON P.. Fractionation of Squid Pens with Ionic Liquids―An Upgraded β-Chitin and Shellfish Protein Production. ACS SUSTAINABLE CHEMISTRY & ENGINEERING, v. 13, n. 7, p. 12-pg., 2025-02-12. (23/02167-1, 13/08293-7, 18/24293-0)

ZUCATTI, VICTOR; WOLF, WILLIAM R.. Implementation Aspects of Galerkin and Least-Squares Petrov-Galerkin Reduced Order Models for Unsteady Flows. AIAA SCITECH 2021 FORUM, v. N/A, p. 17-pg., 2021-01-01. (18/11410-9, 13/08293-7, 19/18809-7)

LOPES, HEITOR N.; GIANNINI, DANIELE; REYNDERS, EDWIN P. B.; PAVANELLO, RENATO; SCHEVENELS, MATTIAS. Ribbed floors with optimized thickness distribution for maximized broadband impact sound insulation. BUILDING AND ENVIRONMENT, v. 263, p. 12-pg., 2024-07-26. (13/08293-7, 19/05393-7, 22/00010-5)

MIRANDA, THAYNARA GUIMARAES; CIRIBELLI, NICOLAS NASCIMENTO; BIHAIN, MURIELLY FERNANDA RIBEIRO; PEREIRA, ANNA KARLA DOS SANTOS; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Interactions between DNA and the acridine intercalator: A computational study. COMPUTATIONAL BIOLOGY AND CHEMISTRY, v. 109, p. 14-pg., 2024-02-21. (13/08293-7, 17/11485-6)

TROMER, R. M.; FELIX, I. M.; PEREIRA, L. F. C.; DA LUZ, M. G. E.; RIBEIRO JUNIOR, L. A.; GALVAO, D. S.. Lattice thermal conductivity of 2D nanomaterials: a simple semi-empirical approach. Physical Chemistry Chemical Physics, v. 25, n. 42, p. 13-pg., 2023-09-27. (13/08293-7)

BARROS, LUANA; CHAVES, LEVY; AVILA, SANDRA. Assessing the Generalizability of Deep Neural Networks-Based Models for Black Skin Lesions. PROGRESS IN PATTERN RECOGNITION, IMAGE ANALYSIS, COMPUTER VISION, AND APPLICATIONS, CIARP 2023, PT II, v. 14470, p. 14-pg., 2024-01-01. (13/08293-7, 20/09838-0)

RODRIGUES, MICHELE BITTENCOURT; FERREIRA, VICTORIA PEDRAZZOLI; CLARO, RAFAEL MOREIRA; MARTINS, ANA PAULA BORTOLETTO; AVILA, SANDRA; HORTA, PAULA MARTINS. Revolutionising food advertising monitoring: a machine learning-based method for automated classification of food videos. PUBLIC HEALTH NUTRITION, v. 26, n. 12, p. 11-pg., 2023-11-10. (13/08293-7, 20/09838-0)

BENATTI, RAYSA; SEVERI, FABIANA; AVILA, SANDRA; COLOMBINI, ESTHER LUNA. Gender Bias Detection in Court Decisions: A Brazilian Case Study. PROCEEDINGS OF THE 2024 ACM CONFERENCE ON FAIRNESS, ACCOUNTABILITY, AND TRANSPARENCY, ACM FACCT 2024, v. N/A, p. 18-pg., 2024-01-01. (13/08293-7, 23/12086-9, 20/09838-0)

KHARE, EESHA; DE ALCANTARA, AMADEUS C. S.; LEE, NIC; SKAF, MUNIR S.; BUEHLER, MARKUS J.. Crosslinker energy landscape effects on dynamic mechanical properties of ideal polymer hydrogels. MATERIALS ADVANCES, v. 5, n. 5, p. 7-pg., 2024-01-11. (13/08293-7, 18/18503-2, 22/03410-4)

MARTINEZ, LEANDRO. MEASURING THE CONDUCTIVITY OF VERY DILUTE ELECTROLYTE SOLUTIONS, DROP BY DROP. Química Nova, v. 41, n. 7, p. 4-pg., 2018-07-01. (13/08293-7, 13/05475-7, 10/16947-9)

LINHARES, ALISSON; AZEVEDO, RODOLFO; IEEE. Towards a Transprecision Polymorphic Floating-Point Unit for Mixed-precision Computing. 2019 31ST INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING (SBAC-PAD 2019), v. N/A, p. 8-pg., 2019-01-01. (13/08293-7)

OLIVEIRA, ELIEZER F.; MACHADO, LEONARDO D.; BAUGHMAN, RAY H.; GALVAO, DOUGLAS S.. Zeolite-templated Carbon Network: A Beta Zeolite Case Study. MRS ADVANCES, v. 5, n. 14-15, p. 6-pg., 2020-01-01. (13/08293-7, 16/18499-0, 19/07157-9)

LASCANE, LEONARDO GOIS; OLIVEIRA, ELIEZER FERNANDO; BATAGIN-NETO, AUGUSTO. Polyfuran-based chemical sensors: reactivity analysis via Fukui indexes and reactive molecular dynamics. MRS ADVANCES, v. 5, n. 10, p. 7-pg., 2020-01-01. (13/08293-7, 16/18499-0, 19/07157-9, 16/11358-1)

SANTOS MIRANDA, GUILHERME HENRIQUE; LINTZMAYER, CARLA NEGRI; DIAS, ZANONI; JANSSON, J; MARTINVIDE, C; VEGARODRIGUEZ, MA. Sorting Permutations by Limited-Size Operations. ALGORITHMS FOR COMPUTATIONAL BIOLOGY (ALCOB 2018), v. 10849, p. 12-pg., 2018-01-01. (13/08293-7, 17/12646-3, 15/11937-9, 16/14132-4)

ALEXANDRINO, ALEXSANDRO OLIVEIRA; LINTZMAYER, CARLA NEGRI; DIAS, ZANONI; JANSSON, J; MARTINVIDE, C; VEGARODRIGUEZ, MA. Approximation Algorithms for Sorting Permutations by Fragmentation-Weighted Operations. ALGORITHMS FOR COMPUTATIONAL BIOLOGY (ALCOB 2018), v. 10849, p. 12-pg., 2018-01-01. (17/12646-3, 16/14132-4, 15/11937-9, 13/08293-7, 17/16871-1)

SIQUEIRA, TAYANE HONORATO; MARTINEZ, LEANDRO. Molecular simulations of fluconazole-mediated inhibition of sterol biosynthesis. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, v. 38, n. 6, p. 11-pg., 2019-05-15. (13/08293-7, 10/16947-9)

CACEFFO, RICARDO; GAMA, GUILHERME; AZEVEDO, RODOLFO; ASSOC COMP MACHINERY. Exploring Active Learning Approaches to Computer Science Classes. SIGCSE'18: PROCEEDINGS OF THE 49TH ACM TECHNICAL SYMPOSIUM ON COMPUTER SCIENCE EDUCATION, v. N/A, p. 6-pg., 2018-01-01. (13/08293-7, 14/07502-4)

ALEXANDRINO, ALEXSANDRO OLIVEIRA; SANTOS MIRANDA, GUILHERME HENRIQUE; LINTZMAYER, CARLA NEGRI; DIAS, ZANONI. Approximation Algorithms for Sorting Permutations by Length-Weighted Short Rearrangements. ELECTRONIC NOTES IN THEORETICAL COMPUTER SCIENCE, v. 346, p. 12-pg., 2019-08-30. (17/12646-3, 15/11937-9, 13/08293-7, 17/16246-0, 17/16871-1)

BRITO, KLAIRTON LIMA; JEAN, GERALDINE; FERTIN, GUILLAUME; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI; CAI, Z; SKUMS, P; LI, M. Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes. BIOINFORMATICS RESEARCH AND APPLICATIONS, ISBRA 2019, v. 11490, p. 12-pg., 2019-01-01. (13/08293-7, 17/16246-0, 17/12646-3, 15/11937-9)

RODRIGUES, CAROLINE MAZINI; SORIANO-VARGAS, AUREA; LAVI, BAHRAM; ROCHA, ANDERSON; DIAS, ZANONI. Manifold Learning for Real-World Event Understanding. IEEE Transactions on Information Forensics and Security, v. 16, p. 2957-2972, 2021. (18/16548-9, 18/16214-3, 17/16246-0, 15/11937-9, 18/05668-3, 13/08293-7, 17/12646-3, 17/16871-1)

CHAVES, ANDERSON S.; LARSON, DANIEL T.; KAXIRAS, EFTHIMIOS; ANTONELLI, ALEX. Microscopic origin of the high thermoelectric figure of merit of n-doped SnSe. Physical Review B, v. 104, n. 11, SEP 24 2021. (19/26088-8, 16/23891-6, 17/26105-4, 13/08293-7, 15/26434-2, 10/16970-0)

ORENHA, RENATO PEREIRA; PEIXOTO, LETICIA BERMUDES; CARAMORI, GIOVANNI FINOTO; PIOTROWSKI, MAURICIO JEOMAR; DE ARAUJO BATISTA, KRYS ELLY; CONTRERAS-GARCIA, JULIA; CARDENAS, CARLOS; MORGON, NELSON HENRIQUE; MENDIZABAL, FERNANDO; TAME PARREIRA, RENATO LUIS. Designing boron and metal complexes for fluoride recognition: a computational perspective. Physical Chemistry Chemical Physics, v. 23, n. 39, p. 22768-22778, OCT 13 2021. (13/08293-7, 17/24856-2, 11/07623-8)

RICCIARDI, TULIO R.; WOLF, WILLIAM R.; MOFFITT, NICHOLAS J.; KREITZMAN, JORDAN R.; BENT, PAUL. Numerical noise prediction and source identification of a realistic landing gear. Journal of Sound and Vibration, v. 496, MAR 31 2021. (19/20437-0, 18/11835-0, 13/07375-0, 13/08293-7)

AMBEKAR, RUSHIKESH S.; OLIVEIRA, ELIEZER F.; KUSHWAHA, BRIJESH; PAL, VARINDER; MACHADO, LEONARDO D.; SAJADI, SEYED MOHAMMAD; BAUGHMAN, RAY H.; AJAYAN, PULICKEL M.; ROY, AJIT K.; GALVAO, DOUGLAS S.; et al. On the mechanical properties of atomic and 3D printed zeolite-templated carbon nanotube networks. ADDITIVE MANUFACTURING, v. 37, JAN 2021. (13/08293-7, 16/18499-0, 19/07157-9)

PEREIRA JUNIOR, M. L.; RIBEIRO JUNIOR, L. A.; GALVAO, D. S.; DE SOUSA, J. M.. Dynamical formation of graphene and graphane nanoscrolls. Chemical Physics Letters, v. 780, OCT 2021. (13/08293-7)

DE AGUIAR FILHO, SILVIO QUINTINO; FERREIRA COSTA, ADAO MARCOS; DOS SANTOS PEREIRA, ANNA KARLA; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Interaction of glyphosate in matrices of cellulose and diethylaminoethyl cellulose biopolymers: theoretical viewpoint of the adsorption process. Journal of Molecular Modeling, v. 27, n. 9, SEP 2021. (13/08293-7, 17/11485-6)

RIBEIRO, INGRID DE ALMEIDA; DE AGUIAR VEIGA, ROBERTO GOMES; DE KONING, MAURICE. Effect of Sodium Chloride on Internal Quasi-Liquid Layers in Ice I-h. Journal of Physical Chemistry C, v. 125, n. 33, p. 18526-18535, AUG 26 2021. (16/23891-6, 13/08293-7)

NOGUEIRA DAS NEVES, ANA PAULA; CARLOS, THAYRINE DIAS; BEZERRA, LEYDIANE BARBOSA; ALCENO, WHISLEY DURAES; SARMENTO, RENATO ALMEIDA; GONCALVES DIAS DE SOUZA, NELSON LUIS; PEREIRA, DOUGLAS HENRIQUE; CAVALLINI, GRASIELE SOARES. Carbonate anion photolyzed by solar radiation or combined with peracetic acid to form reactive species for dye degradation. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY, v. 420, NOV 1 2021. (17/11485-6, 13/08293-7)

GARCEZ, G. L.; PICELLI, R.; PAVANELLO, R.. Bi-directional evolutionary topology optimization based on stress minimization under design-dependent surface loads. ENGINEERING OPTIMIZATION, v. N/A, p. 21-pg., 2022-05-07. (13/08293-7)

BARROS, GABRIEL DE ALBUQUERQUE; MORGON, NELSON HENRIQUE. Finding reliable methodology for optical rotation and correct predictions of (s)-methyloxirane and 1R,5R)-beta-pinene. CHIRALITY, v. N/A, p. 12-pg., 2022-06-07. (13/08293-7, 19/12294-5)

CHO, KYUNG HO; BORGES, D. DAMASCENO; LEE, JI SUN; PARK, JAEDEUK; CHO, SUNG JUNE; JO, DONGHUI; LEE, U-HWANG; MAURIN, GUILLAUME; CHANG, JONG-SAN. Hydrothermal Green Synthesis of a Robust Al Metal-Organic- Framework Effective for Water Adsorption Heat Allocations. ACS SUSTAINABLE CHEMISTRY & ENGINEERING, v. N/A, p. 10-pg., 2022-05-16. (13/08293-7)

DEDA, TARCISIO C.; WOLF, WILLIAM R.. Extremum Seeking Control Applied to Airfoil Trailing-Edge Noise Suppression. AIAA JOURNAL, v. 60, n. 2, p. 21-pg., 2022-02-01. (19/19179-7, 13/08293-7)

GONZALEZ, JORGE; PALMA, MAURICIO G.; HATTINK, MAARTEN; RUBIO-NORIEGA, RUTH; OROSA, LOIS; MUTLU, ONUR; BERGMAN, KEREN; AZEVEDO, RODOLFO. Optically connected memory for disaggregated data centers. JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING, v. 163, p. 13-pg., 2022-02-22. (13/08293-7, 14/01642-9)

REGO, JESSICA SANTOS; MIRANDA, CAETANO RODRIGUES; DE KONING, MAURICE. Effects of Ca2+ -> Mg2+ substitution on the properties of cementitious tobermorite. PHYSICAL REVIEW MATERIALS, v. 6, n. 6, p. 15-pg., 2022-06-29. (20/06896-0, 16/23891-6, 13/08293-7)

MIOTTO, RENATO F.; WOLF, WILLIAM R.. Flow imaging as an alternative to non-intrusive measurements and surrogate models through vision transformers and convolutional neural networks. Physics of Fluids, v. 35, n. 4, p. 18-pg., 2023-04-01. (22/09196-4, 13/08293-7, 21/06448-0, 13/07375-0)

PEREIRA, MARCIO MACHADO; AMARAL, J. NELSON; ARAUJO, GUIDO; IEEE. Measuring Effective Work to Reward Success in Dynamic Transaction Scheduling. 2014 43RD INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING (ICPP), v. N/A, p. 10-pg., 2014-01-01. (13/08293-7)

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BRANDAO, WJEFFERSON H. S.; AGUIAR, ACRISIO L.; FONSECA, ALEXANDRE F.; GALVAO, D. S.; DE SOUSA, J. M.. Mechanical properties of tetragraphene single-layer: A molecular dynamics study. MECHANICS OF MATERIALS, v. 176, p. 10-pg., 2023-01-01. (13/08293-7, 20/02044-9)

DE ALCANTARA, AMADEUS C. S.; FELIX, LEVI C.; GALVAO, DOUGLAS S.; SOLLERO, PAULO; SKAF, MUNIR S.. The Role of the Extrafibrillar Volume on the Mechanical Properties of Molecular Models of Mineralized Bone Microfibrils. ACS BIOMATERIALS SCIENCE & ENGINEERING, v. N/A, p. 16-pg., 2022-12-09. (18/18503-2, 13/08293-7, 18/11352-9)

MATUSALEM, FILIPE; REGO, JESSICA SANTOS; DE KONING, MAURICE. Plastic deformation of superionic water ices. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v. 119, n. 45, p. 8-pg., 2022-11-08. (20/06896-0, 16/23891-6, 13/08293-7)

PEREIRA, RODRIGO L.; LOPES, HEITOR N.; MOURA, MARCIO S.; PAVANELLO, RENATO. Multi-domain acoustic topology optimization based on the BESO approach: applications on the design of multi-phase material mufflers. STRUCTURAL AND MULTIDISCIPLINARY OPTIMIZATION, v. 66, n. 1, p. 22-pg., 2023-01-01. (19/05393-7, 13/08293-7)

PORTO BARROS, MAYRE MANNY; COSTA ALMEIDA, KARLA JACKELINE; SOUSA CONCEICAO, MARCUS VINICIUS; PEREIRA, DOUGLAS HENRIQUE; BOTELHO, GLEICE. Photodegradation of bisphenol A by ZnS combined with H2O2: Evaluation of photocatalytic activity, reaction parameters, and DFT calculations. JOURNAL OF MOLECULAR LIQUIDS, v. 371, p. 12-pg., 2022-12-22. (17/11485-6, 13/08293-7)

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DE OLIVEIRA GAIA PIMENTA, JOSIANE ROSA; DUARTE, EMANUEL FELIPE; BARANAUSKAS, M. CECILIA C.; MEDEIROS, CLAUDIA BAUZER. UbiAccess: an Instrument to Assess System Access in Ubiquitous Scenarios. INTERACTING WITH COMPUTERS, v. N/A, p. 14-pg., 2022-10-10. (15/16528-0, 13/08293-7)

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GUIMARAES, ANTONIO; BORIN, EDSON; ARANHA, DIEGO F.; BALDI, M; PERSICHETTI, E; SANTINI, P. Introducing Arithmetic Failures to Accelerate QC-MDPC Code-Based Cryptography. CODE-BASED CRYPTOGRAPHY, CBC 2019, v. 11666, p. 25-pg., 2019-01-01. (14/50704-7, 13/08293-7)

BALIEIRO, ALESSANDRA M.; ANUNCIACAO, EDUARDA L. S.; COSTA, CLAUBER H. S.; QAYED, WESAM S.; SILVA, JOSE ROGERIO A.. Computational Analysis of SAM Analogs as Methyltransferase Inhibitors of nsp16/nsp10 Complex from SARS-CoV-2. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 23, n. 22, p. 12-pg., 2022-11-01. (13/08293-7)

DOS SANTOS, ALBERTO M.; DA COSTA, CLAUBER H. S.; SILVA, PEDRO H. A.; SKAF, MUNIR S.; LAMEIRA, JERONIMO. Exploring the Reaction Mechanism of Polyethylene Terephthalate Biodegradation through QM/MM Approach. Journal of Physical Chemistry B, v. 128, n. 31, p. 14-pg., 2024-07-29. (13/08293-7, 22/04703-5, 22/04695-2)

DA SILVA, PAMELLA CRISTINY CARNEIRO; MARTINEZ, LEANDRO. Extended Conformational Selection in the Antigen-Antibody Interaction of the PfAMA1 Protein. Journal of Physical Chemistry B, v. 128, n. 35, p. 9-pg., 2024-08-22. (13/08293-7, 18/24293-0)

OLIVEIRA, ELIEZER FERNANDO; BATAGIN-NETO, AUGUSTO; GALVAO, DOUGLAS SOARES. On the sulfur doping of gamma-graphdiyne: A Molecular Dynamics and DFT study. MRS ADVANCES, v. 5, n. 52-53, p. 6-pg., 2020-01-01. (13/08293-7, 16/18499-0, 19/07157-9)

SONODA, MILTON T.; DOLORES ELOLA, M.; SKAF, MUNIR S.. Molecular dynamics simulations of the dielectric properties of fructose aqueous solutions. JOURNAL OF PHYSICS-CONDENSED MATTER, v. 28, n. 41, p. 8-pg., 2016-10-19. (13/08293-7)

DO ESPIRITO SANTO, JACQUELINE MIDLEJ; MEDEIROS, CLAUDIA BAUZER; DASILVEIRA, M; PRUSKI, C; SCHNEIDER, R. Semantic Interoperability of Clinical Data. DATA INTEGRATION IN THE LIFE SCIENCES, DILS 2017, v. 10649, p. 9-pg., 2017-01-01. (13/08293-7)

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FELIX, ISAAC M.; TROMER, RAPHAEL M.; MACHADO, LEONARDO D.; GALVAO, DOUGLAS S.; RIBEIRO, LUIZ A.; PEREIRA, MARCELO L.. Irida-graphene phonon thermal transport via non-equilibrium molecular dynamics simulations. NANOSCALE, v. 16, n. 35, p. 10-pg., 2024-08-22. (13/08293-7)

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PEREIRA, ANDER FRANCISCO; MARTINEZ, LEANDRO. Helical Content Correlations and Hydration Structures of the Folding Ensemble of the B Domain of Protein A. JOURNAL OF CHEMICAL INFORMATION AND MODELING, v. 64, n. 8, p. 10-pg., 2024-04-03. (10/16947-9, 20/04549-0, 18/14274-9, 18/24293-0, 13/08293-7)

MACEDO, VINICIUS SOUZA; SILVA, THIAGO SOARES; MIRANDA, THAYNARA GUIMARAS; GOMES, ELLANE JACQUELINE COELHO MOREIRA; PEREIRA, DOUGLAS HENRIQUE. Assessment of the nanodelivery capacity of antineoplastic jacaranone by B₁₂N₁₂ nanocages: A DFT study. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1232, p. 12-pg., 2024-01-09. (13/08293-7, 17/11485-6)

KANEGAE, GUILHERME B.; PEREIRA JUNIOR, MARCELO L.; GALVAO, DOUGLAS S.; RIBEIRO JUNIOR, LUIZ A.; FONSECA, ALEXANDRE F.. Enhanced Elastocaloric Effects in γ-Graphyne. ACS APPLIED MATERIALS & INTERFACES, v. N/A, p. 9-pg., 2024-05-06. (23/02651-0, 13/08293-7)

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RAMOS, FELIPE CARDOSO; MARTINEZ, LEANDRO. Molecular dynamics and solvation structures of the /3-glucosidase from Humicola insolens (BGHI) in aqueous solutions containing glucose. International Journal of Biological Macromolecules, v. 286, p. 13-pg., 2024-12-12. (19/17874-0, 13/08293-7, 22/04810-6)

DA SILVA, FABIO BARBOSA; PEREIRA, ANNA KARLA DOS SANTOS; PEREIRA, DOUGLAS HENRIQUE; DE SOUZA, NELSON LUIS GONCALVES DIAS; CAVALLINI, GRASIELE SOARES. Degradation of phenol by radical sulfate anion. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY, v. 462, p. 7-pg., 2024-12-20. (23/17727-2, 13/08293-7, 17/11485-6)

RICCIARDI, TULIO R.; WOLF, WILLIAM R.; TAIRA, KUNIHIKO. Laminar-turbulent transition and intermittency effects on secondary tones from a NACA0012 airfoil. AIAA AVIATION 2021 FORUM, v. N/A, p. 10-pg., 2021-01-01. (13/08293-7, 19/20437-0, 18/11835-0)

LUI, HUGO F. S.; WOLF, WILLIAM R.; BRAUN, JAMES; RAHBARI, IMAN; PANIAGUA, GUILLERMO. Numerical simulations of supersonic stator cascades: Assessment of LES and RANS calculations. AIAA AVIATION 2021 FORUM, v. N/A, p. 11-pg., 2021-01-01. (13/08293-7, 19/26196-5)

SILVA, LEANDRO JUNIO DE O.; WOLF, WILLIAM R.. Analysis of adverse pressure gradient effects in the boundary layer of a NACA0012 airfoil at high angle of attack. AIAA AVIATION 2023 FORUM, v. N/A, p. 11-pg., 2023-01-01. (13/08293-7, 22/00256-4, 21/06448-0)

MIOTTO, RENATO; WOLF, WILLIAM; GAITONDE, DATTA; VISBAL, MIGUEL. An investigation of compressibility effects on dynamic stall for a periodic plunging airfoil at moderate Reynolds number. AIAA SCITECH 2021 FORUM, v. N/A, p. 10-pg., 2021-01-01. (13/07375-0, 17/10795-1, 19/02335-6, 13/08293-7)

HAWTHORNE, FELIPE; NETA, VIRGILIA M. S.; FREIRE, JOSE A.; WOELLNER, CRISTIANO F.. Nanoconfined water phase transitions in infinite graphene slits: Molecular dynamics simulations and mean-field insights. CARBON TRENDS, v. 19, p. 10-pg., 2025-02-27. (19/17874-0, 13/08293-7)

MOREIRA, FARNEY COUTINHO; WOLF, WILLIAM ROBERTO; AZEVEDO, JOAO LUIZ F.. Thermal analysis of hypersonic flows of carbon dioxide and air in thermodynamic non-equilibrium. INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER, v. 165, p. 19-pg., 2021-02-01. (13/08293-7, 13/07375-0)

PICCOLI, VINICIUS; MARTINEZ, LEANDRO. Correlated counterion effects on the solvation of proteins by ionic liquids. JOURNAL OF MOLECULAR LIQUIDS, v. 320, p. 16-pg., 2020-12-15. (18/24293-0, 13/08293-7, 10/16947-9)

PEREIRA JUNIOR, MARCELO LOPES; DA CUNHA, WILIAM FERREIRA; GALVAO, DOUGLAS SOARES; RIBEIRO JUNIOR, LUIZ ANTONIO. A reactive molecular dynamics study on the mechanical properties of a recently synthesized amorphous carbon monolayer converted into a nanotube/nanoscroll. Physical Chemistry Chemical Physics, v. 23, n. 15, p. 7-pg., 2021-04-21. (13/08293-7)

PEREIRA, CAROLINE S.; SILVEIRA, RODRIGO L.; SKAF, MUNIR S.. QM/MM Simulations of Enzymatic Hydrolysis of Cellulose: Probing the Viability of an Endocyclic Mechanism for an Inverting Cellulase. JOURNAL OF CHEMICAL INFORMATION AND MODELING, v. 61, n. 4, p. 11-pg., 2021-03-24. (13/08293-7, 14/10448-1, 15/25031-1)

LUPORI, LEANDRO; DO ROSARIO, VANDERSON MARTINS; BORIN, EDSON; BIANCHINI, C; OSTHOFF, C; SOUZA, P; FERREIRA, R. High-Performance RISC-V Emulation. HIGH PERFORMANCE COMPUTING SYSTEMS, WSCAD 2018, v. 1171, p. 17-pg., 2020-01-01. (13/08293-7)

GALVIS, ANDRES F.; PRADA, DANIEL M.; MOURA, LUCAS S.; ZAVAGLIA, CECILIA; FOSTER, JAMIE M.; SOLLERO, PAULO; WROBEL, LUIZ C.. BESLE: Boundary element software for 3D linear elasticity. COMPUTER PHYSICS COMMUNICATIONS, v. 265, p. 14-pg., 2021-04-29. (13/08293-7)

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PANTOJA, FAGNER LEAL; CAVOTO, PATRICIA; DOS REIS, JULIO CESAR; SANTANCHE, ANDRE; IEEE. Generating Knowledge Networks from Phenotypic Descriptions. PROCEEDINGS OF THE 2016 IEEE 12TH INTERNATIONAL CONFERENCE ON E-SCIENCE (E-SCIENCE), v. N/A, p. 10-pg., 2016-01-01. (14/14890-0, 13/08293-7)

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LEITE, RODOLFO PAULA; SANTOS-FLOREZ, PEDRO ANTONIO; DE KONING, MAURICE. Uhlenbeck-Ford model: Phase diagram and corresponding-states analysis. Physical Review E, v. 96, n. 3, SEP 11 2017. (13/08293-7)

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NASCIMENTO, LEANDRO COSTA; SALAZAR, MARCELA MENDES; LEPIKSON-NETO, JORGE; OLIVEIRA CAMARGO, EDUARDO LEAL; PARREIRAS, LUCAS SALERA; GUIMARAES PEREIRA, GONCALO AMARANTE; CARAZZOLLE, MARCELO FALSARELLA. EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, OCT 24 2017. (13/08293-7)

OLIVEIRA, ELIEZER F.; MACHADO, LEONARDO D.; BAUGHMAN, RAY H.; GALVAO, DOUGLAS S.. Zeolite-templated Carbon Network: A Beta Zeolite Case Study. MRS ADVANCES, v. 5, n. 14-15, SI, p. 751-756, 2020. (13/08293-7, 16/18499-0, 19/07157-9)

GUIMARAES, ANTONIO; ARANHA, DIEGO F.; BORIN, EDSON. Optimized implementation of QC-MDPC code-based cryptography. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, v. 31, n. 18, SI, SEP 25 2019. (13/08293-7, 14/50704-7)

GALVIS, ANDRES F.; SANTOS-FLOREZ, PEDRO A.; SOLLERO, PAULO; DE KONING, MAURICE; WROBEL, LUIZ C.. Multiscale model of the role of grain boundary structures in the dynamic intergranular failure of polycrystal aggregates. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, v. 362, n. SI, APR 15 2020. (13/08293-7)

ARAUJO, EVANDRO A.; DIAS, ARTUR HERMANO SAMPAIO; KADOWAKI, MARCO A. S.; PIYADOV, VASILY; PELLEGRINI, VANESSA O. A.; URIO, MATEUS B.; RAMOS, LUIZ P.; SKAF, MUNIR S.; POLIKARPOV, IGOR. mpact of cellulose properties on enzymatic degradation by bacterial GH48 enzymes: Structural and mechanistic insights from processive Bacillus licheniformis Cel48B cellulas. Carbohydrate Polymers, v. 264, JUL 15 2021. (13/08293-7, 15/13684-0, 14/00769-5, 19/17350-0)

PICCOLI, VINICIUS; MARTINEZ, LEANDRO. Correlated counterion effects on the solvation of proteins by ionic liquids. JOURNAL OF MOLECULAR LIQUIDS, v. 320, n. A, DEC 15 2020. (18/24293-0, 10/16947-9, 13/08293-7)

GUIMARAES, ANTONIO; LACALLE, LUIS; RODAMILANS, CHARLES B.; BORIN, EDSON. High-performance IO for seismic processing on the cloud. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, FEB 2021. (13/08293-7, 19/12783-6)

IRAN L. SOUSA; CAIO M. PORTO; KÁTIA C. BASSANI; MILENE H. MARTINS; FRANCISCO B. T. PESSINE; NELSON H. MORGON. Preparation and Characterization of the β-Cyclodextrin Inclusion Complex with Benzbromarone. Journal of the Brazilian Chemical Society, v. 31, n. 8, p. 1585-1596, 2020-07-27. (13/08293-7)

DOUGLAS H. NAKAHATA; CARLOS E. S. P. CORSINO; GUILHERME C. DE MORAIS; GABRIELE M. PEREIRA; ÁLLEFE B. CRUZ; DOUGLAS HENRIQUE PEREIRA; NATASHA M. CASSANI; URIEL ENRIQUE A. RUIZ; IGOR A. SANTOS; ANA CAROLINA G. JARDIM; et al. Synthesis, Characterization and in vitro Evaluation of 4-(2-Aminoethyl)benzenesulfonamide Schiff Bases against Arboviruses. Journal of the Brazilian Chemical Society, v. 35, n. 11, 2024-05-10. (13/08293-7, 17/11485-6, 15/20882-3, 21/10265-8)

LANDINEZ BORDA, EDGAR JOSUE; CAI, WEI; DE KONING, MAURICE. Ideal Shear Strength of a Quantum Crystal. Physical Review Letters, v. 112, n. 15, APR 17 2014. (13/08293-7)

SOUZA, P. C. T.; PUHL, A. C.; MARTINEZ, L.; APARICIO, R.; NASCIMENTO, A. S.; FIGUEIRA, A. C. M.; NGUYEN, P.; WEBB, P.; SKAF, M. S.; POLIKARPOV, I.. Identification of a New Hormone-Binding Site on the Surface of Thyroid Hormone Receptor. MOLECULAR ENDOCRINOLOGY, v. 28, n. 4, p. 534-545, APR 2014. (13/08293-7, 10/17048-8)

CARAZZOLLE, MARCELO FALSARELLA; DE CARVALHO, LUCAS MIGUEL; SLEPICKA, HUGO HENRIQUE; VIDAL, RAMON OLIVEIRA; GUIMARAES PEREIRA, GONCALO AMARANTE; KOBARG, JOERG; MEIRELLES, GABRIELA VAZ. IIS - Integrated Interactome System: A Web-Based Platform for the Annotation, Analysis and Visualization of Protein-Metabolite-Gene-Drug Interactions by Integrating a Variety of Data Sources and Tools. PLoS One, v. 9, n. 6, JUN 20 2014. (13/08293-7)

GALLO, PAOLA; BACHLER, JOHANNES; BOVE, LIVIA E.; BOEHMER, ROLAND; CAMISASCA, GAIA; CORONAS, LUIS E.; CORTI, HORACIO R.; RIBEIRO, INGRID DE ALMEIDA; DE KONING, MAURICE; FRANZESE, GIANCARLO; et al. Advances in the study of supercooled water. EUROPEAN PHYSICAL JOURNAL E, v. 44, n. 11, NOV 2021. (13/08293-7, 16/23891-6)

RIBEIRO JUNIOR, LUIZ A.; TROMER, RAPHAEL M.; DOS SANTOS, RAMIRO M.; GALVAO, DOUGLAS S.. On the adsorption mechanism of caffeine on MAPbI(3) perovskite surfaces: a combined UMC-DFT study. Physical Chemistry Chemical Physics, v. 23, n. 18, p. 10807-10813, MAY 14 2021. (13/08293-7)

SANTOS-FLOREZ, PEDRO ANTONIO; DE KONING, MAURICE. Nonequilibrium processes in repulsive binary mixtures. Journal of Chemical Physics, v. 152, n. 23, JUN 21 2020. (16/23891-6, 13/08293-7)

DAMASCENO, D. A.; RAJAPAKSE, R. K. N. D.; MESQUITA, E.; PAVANELLO, R.. Atomistic simulation of tensile strength properties of graphene with complex vacancy and topological defects. ACTA MECHANICA, v. 231, n. 8, JUN 2020. (13/08293-7)

PORTO, CAIO M.; SANTANA, LUCAS C.; MORGON, NELSON H.. W2SDD theory for computational thermochemistry: study of the addition of hydrogen halide to propene. THEORETICAL CHEMISTRY ACCOUNTS, v. 139, n. 7, JUN 23 2020. (19/12294-5, 13/08293-7)

GAVAZZONI, CRISTINA; SKAF, MUNIR S.. Adsorption of CO(2)and CH(4)in MIL-47 investigated by the 3D-RISM molecular theory of solvation. Physical Chemistry Chemical Physics, v. 22, n. 23, p. 13240-13247, JUN 21 2020. (17/18512-9, 13/08293-7)

ORENHA, RENATO PEREIRA; GUERRA SILVA, GRAZIELE CAPPATO; DE LIMA BATISTA, ANA PAULA; SAMPAIO DE OLIVEIRA FILHO, ANTONIO GUSTAVO; MORGON, NELSON HENRIQUE; DA SILVA, VANESSA BORGES; PEREIRA FURTADO, SAULO SAMUEL; CARAMORI, GIOVANNI FINOTO; PIOTROWSKI, MAURICIO JEOMAR; TAME PARREIRA, RENATO LUIS. Tracking the role oftrans-ligands in ruthenium-NO bond lability: computational insight. NEW JOURNAL OF CHEMISTRY, v. 44, n. 27, p. 11448-11456, JUL 21 2020. (11/07623-8, 17/24856-2, 19/00543-0, 15/11714-0, 13/08293-7, 17/18238-4)

DOS SANTOS PEREIRA, ANNA KARLA; MANZANO, CARLOS MARROTE; NAKAHATA, DOUGLAS HIDEKI; TENORIO CLAVIJO, JUAN CARLOS; PEREIRA, DOUGLAS HENRIQUE; LUSTRI, WILTON ROGERIO; CORBI, PEDRO PAULO. Synthesis, crystal structures, DFT studies, antibacterial assays and interaction assessments with biomolecules of new platinum(ii) complexes with adamantane derivatives. NEW JOURNAL OF CHEMISTRY, v. 44, n. 27, p. 11546-11556, JUL 21 2020. (13/08293-7, 17/11485-6, 15/20882-3, 18/12590-0, 17/25995-6, 18/12062-4)

SILVEIRA, RODRIGO L.; SKAF, MUNIR S.. Concerted motions and large-scale structural fluctuations of Trichoderma reesei Cel7A cellobiohydrolase. Physical Chemistry Chemical Physics, v. 20, n. 11, p. 7498-7507, MAR 21 2018. (13/08293-7, 14/10448-1)

SANTOS-FLOREZ, PEDRO ANTONIO; RUESTES, CARLOS J.; DE KONING, MAURICE. Atomistic Simulation of Nanoindentation of Ice I-h. Journal of Physical Chemistry C, v. 124, n. 17, p. 9329-9336, APR 30 2020. (16/23891-6, 13/08293-7)

BRITO, KLAIRTON L.; OLIVEIRA, ANDRE R.; ALEXANDRINO, ALEXSANDRO O.; DIAS, ULISSES; DIAS, ZANONI. An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes. Algorithms for Molecular Biology, v. 16, n. 1, DEC 29 2021. (19/27331-3, 15/11937-9, 17/12646-3, 13/08293-7)

ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI. Incorporating intergenic regions into reversal and transposition distances with indels. JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, v. 19, n. 6, SI, DEC 2021. (19/27331-3, 17/12646-3, 13/08293-7, 15/11937-9)

PEREIRA, RODRIGO L.; LOPES, HEITOR N.; PAVANELLO, RENATO. p Topology optimization of acoustic systems with a multiconstrained BESO approach. FINITE ELEMENTS IN ANALYSIS AND DESIGN, v. 201, APR 1 2022. (13/08293-7, 19/05393-7)

FELIX, LEVI C.; TROMER, RAPHAEL M.; WOELLNER, CRISTIANO F.; TIWARY, CHANDRA S.; GALVAO, DOUGLAS S.. Mechanical response of pentadiamond: A DFT and molecular dynamics study. PHYSICA B-CONDENSED MATTER, v. 629, MAR 15 2022. (13/08293-7)

PISANI, FLAVIA; DO ROSARIO, VANDERSON MARTINS; BORIN, EDSON. Fog vs. Cloud Computing: Should I Stay or Should I Go?. FUTURE INTERNET, v. 11, n. 2, FEB 2019. (13/08293-7)

DAMASCENO, D. A.; MESQUITA, E.; RAJAPAKSE, R. K. N. D.; PAVANELLO, R.. Atomic-scale finite element modelling of mechanical behaviour of graphene nanoribbons. INTERNATIONAL JOURNAL OF MECHANICS AND MATERIALS IN DESIGN, v. 15, n. 1, p. 145-157, MAR 2019. (12/17948-4, 15/00209-2, 13/08293-7, 13/23085-1)

NAGAMATSU, SHEILA TIEMI; TEIXEIRA, GLEIDSON SILVA; BEZERRA DE MELLO, FELLIPE DA SILVEIRA; GALVAO TIZEI, PEDRO AUGUSTO; GRICHOSWSKI NAKAGAWA, BRUNA TATSUE; DE CARVALHO, LUCAS MIGUEL; GUIMARAES PEREIRA, GONCALO AMARANTE; CARAZZOLLE, MARCELO FALSARELLA. Genome Assembly of a Highly Aldehyde-Resistant Saccharomyces cerevisiae SA1-Derived Industrial Strain. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, v. 8, n. 13, MAR 2019. (16/02506-7, 15/06677-8, 13/08293-7, 14/26905-2, 15/06263-9)

LESCANO, CAROLINE HONAISER; DE OLIVEIRA, IVAN PIRES; ZAMINELLI, TIAGO; BALDIVIA, DEBORA DA SILVA; DA SILVA, LUAN RAMOS; NAPOLITANO, MAURO; MENDES SILVERIO, CAMILA BITENCOURT; LINCOPAN, NILTON; SANJINEZ-ARGANDONA, ELIANA JANET. Campomanesia adamantium Peel Extract in Antidiarrheal Activity: The Ability of Inhibition of Heat-Stable Enterotoxin by Polyphenols. PLoS One, v. 11, n. 10, OCT 20 2016. (13/08293-7, 13/05475-7, 10/16947-9)

TIM, CARLA ROBERTA; BOSSINI, PAULO SERGIO; KIDO, HUELITON WILIAN; MALAVAZI, IRAN; KRESS, MARCIA REGINA VON ZESKA; CARAZZOLLE, MARCELO FALSARELLA; RENNO, ANA CLAUDIA; PARIZOTTO, NIVALDO ANTONIO. Low-level laser therapy induces an upregulation of collagen gene expression during the initial process of bone healing: a microarray analysis. Journal of Biomedical Optics, v. 21, n. 8, AUG 2016. (13/08293-7, 10/15335-0)

DE MACEDO BARTOLETI, LUIZ FILIPE; PERES, ELEN ARROYO; SOBRAL-SOUZA, THADEU; MASCARENHAS FONTES, FERNANDA VON HERTWIG; DA SILVA, MARCIO JOSE; SOLFERINI, VERA NISAKA. Phylogeography of the dry vegetation endemic species Nephila sexpunctata (Araneae: Araneidae) suggests recent expansion of the Neotropical Dry Diagonal. Journal of Biogeography, v. 44, n. 9, p. 2007-2020, SEP 2017. (13/08293-7, 12/02526-7)

DE OLIVEIRA, IVAN PIRES; JARA, GABRIEL ERNESTO; MARTINEZ, LEANDRO. Molecular mechanism of activation of Burkholderia cepacia lipase at aqueous-organic interfaces. Physical Chemistry Chemical Physics, v. 19, n. 46, p. 31499-31507, DEC 14 2017. (13/08293-7, 13/05475-7, 13/22360-9, 10/16947-9)

MALLINSON, SAM J. B.; MACHOVINA, MELODIE M.; SILVEIRA, RODRIGO L.; GARCIA-BORRAS, MARC; GALLUP, NATHAN; JOHNSON, CHRISTOPHER W.; ALLEN, MARK D.; SKAF, MUNIR S.; CROWLEY, MICHAEL F.; NEIDLE, ELLEN L.; et al. A promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion. NATURE COMMUNICATIONS, v. 9, JUN 27 2018. (13/08293-7, 14/10448-1, 16/22956-7)

YADAV, THAKUR PRASAD; WOELLNER, CRISTIANO F.; SINHA, SHYAM K.; SHARIFI, TIVA; APTE, AMEY; MUKHOPADHYAY, NILAY KRISHNA; SRIVASTAVA, ONKAR NATH; VAJTAI, ROBERT; GALVAO, DOUGLAS S.; TIWARY, CHANDRA SEKHAR; et al. Liquid Exfoliation of Icosahedral Quasicrystals. ADVANCED FUNCTIONAL MATERIALS, v. 28, n. 26, JUN 27 2018. (13/08293-7, 14/24547-1)

TOMMASINI, RODRIGO BATISTA; CARVALHO, LEONARDO DE OLIVEIRA; PAVANELLO, RENATO. A dynamic model to evaluate the influence of the laying or retrieval speed on the installation and recovery of subsea equipment. APPLIED OCEAN RESEARCH, v. 77, p. 34-44, AUG 2018. (13/08293-7)

PRATES, ERICA T.; GUAN, XIAOYANG; LI, YAOHAO; WANG, XINFENG; CHAFFEY, PATRICK K.; SKAF, MUNIR S.; CROWLEY, MICHAEL F.; TAN, ZHONGPING; BECKHAM, GREGG T.. The impact of O-glycan chemistry on the stability of intrinsically disordered proteins. CHEMICAL SCIENCE, v. 9, n. 15, p. 3710-3715, APR 21 2018. (16/04775-5, 13/08293-7)

BIZAO, RAFAEL A.; MACHADO, LEONARDO D.; DE SOUSA, JOSE M.; PUGNO, NICOLA M.; GALVAO, DOUGLAS S.. Scale Effects on the Ballistic Penetration of Graphene Sheets. SCIENTIFIC REPORTS, v. 8, APR 30 2018. (13/08293-7)

BORGES, DAIANE DAMASCENO; WOELLNER, CRISTIANO F.; AUTRETO, PEDRO A. S.; GALVAO, DOUGLAS S.. Insights on the mechanism of water-alcohol separation in multilayer graphene oxide membranes: Entropic versus enthalpic factors. Carbon, v. 127, p. 280-286, FEB 2018. (13/08293-7, 14/24547-1, 15/14703-9)

RADHAKRISHNAN, SRUTHI; SUDEEP, PARAMBATH M.; PARK, JUN HYOUNG; WOELLNER, CRISTIANO F.; MALADONADO, KIERSTEIN; GALVAO, DOUGLAS S.; KAIPPARETTU, BENNY ABRAHAM; TIWARY, CHANDRA SEKHAR; AJAYAN, PULICKEL M.. Multifunctional Hybrids Based on 2D Fluorinated Graphene Oxide and Superparamagnetic Iron Oxide Nanoparticles. PARTICLE & PARTICLE SYSTEMS CHARACTERIZATION, v. 34, n. 11, NOV 2017. (13/08293-7, 16/12340-9)

OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI. On the Sorting by Reversals and Transpositions Problem. JOURNAL OF UNIVERSAL COMPUTER SCIENCE, v. 23, n. 9, p. 868-906, 2017. (13/08293-7, 15/11937-9, 14/19401-8)

LEAL, REGIS CASIMIRO; CUSTODIO, ROGERIO. G3(MP2)//B3-SBK: A revision of a composite theory for calculations of thermochemical properties including some non-transition elements beyond the fourth period. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1149, p. 1-7, FEB 1 2019. (13/08293-7, 17/11485-6)

LEITE, RODOLFO PAULA; DE KONING, MAURICE. Nonequilibrium free-energy calculations of fluids using LAMMPS. COMPUTATIONAL MATERIALS SCIENCE, v. 159, p. 316-326, MAR 2019. (13/08293-7, 16/23891-6)

GALE, ELLA; WIRAWAN, REMIGIUS H.; SILVEIRA, RODRIGO L.; PEREIRA, CAROLINE S.; JOHNS, MARCUS A.; SKAF, MUNIR S.; SCOTT, JANET L.. Directed Discovery of Greener Cosolvents: New Cosolvents for Use in Ionic Liquid Based Organic Electrolyte Solutions for Cellulose Dissolution. ACS SUSTAINABLE CHEMISTRY & ENGINEERING, v. 4, n. 11, p. 6200-6207, NOV 2016. (13/08293-7, 14/10448-1, 15/25031-1)

CHAKRAVARTY, DIBYENDU; TIWARY, CHANDRA SEKHAR; WOELLNER, CRISTANO F.; RADHAKRISHNAN, SRUTHI; VINOD, SOUMYA; OZDEN, SEHMUS; DA SILVA AUTRETO, PEDRO ALVES; BHOWMICK, SANJIT; ASIF, SYED; MANI, SENDURAI A.; et al. 3D Porous Graphene by Low-Temperature Plasma Welding for Bone Implants. Advanced Materials, v. 28, n. 40, p. 8959-8967, OCT 26 2016. (14/24547-1, 13/08293-7)

OLIVEIRA, IVAN P.; MARTINEZ, LEANDRO. Molecular basis for competitive solvation of the Burkholderia cepacia lipase by sorbitol and urea. Physical Chemistry Chemical Physics, v. 18, n. 31, p. 21797-21808, AUG 31 2016. (10/16947-9, 13/08293-7, 13/05475-7)

SILVA, MARCOS V. D.; CUSTODIO, ROGERIO; MIRANDA REIS, MIRIA HESPANHOL. Determination of Enthalpies of Formation of Fatty Acids and Esters by Density Functional Theory Calculations with an Empirical Correction. Industrial & Engineering Chemistry Research, v. 54, n. 39, p. 9545-9549, OCT 7 2015. (13/08293-7)

VASCONCELOS, ADRIELLE A.; JOSE, JULIANA; TOKIMATU, PAULO M.; CAMARGO, ANTONIO P.; TEIXEIRA, PAULO J. P. L.; THOMAZELLA, DANIELA P. T.; DO PRADO, V, PAULA F.; FIORIN, GABRIEL L.; COSTA, JULIANA L.; FIGUEIRA, ANTONIO; et al. Adaptive evolution of Moniliophthora PR-1 proteins towards its pathogenic lifestyle. BMC ECOLOGY AND EVOLUTION, v. 21, n. 1, MAY 14 2021. (16/10498-4, 18/04240-0, 14/06181-0, 13/09878-9, 13/08293-7, 17/13015-7, 14/00802-2, 17/13319-6, 13/05979-5, 13/04309-6, 11/23315-1)

LABAKI, JOSUE; BARROS, PERSIO L. A.; MESQUITA, EUCLIDES. A model of the time-harmonic torsional response of piled plates using an IBEM-FEM coupling. Engineering Analysis with Boundary Elements, v. 125, p. 241-249, APR 1 2021. (13/08293-7)

ROMANINI, E.; LABAKI, J.; VASCONCELOS, A. C. A.; MESQUITA, E.. Influence functions for a 3D full-space under bilinear stationary loads. Engineering Analysis with Boundary Elements, v. 130, p. 286-299, SEP 1 2021. (13/08293-7)

ZUO, KUICHANG; ZHANG, XIANG; HUANG, XIAOCHUAN; OLIVEIRA, ELIEZER F.; GUO, HUA; ZHAI, TIANSHU; WANG, WEIPENG; ALVAREZ, PEDRO J. J.; ELIMELECH, MENACHEM; AJAYAN, PULICKEL M.; et al. Ultrahigh resistance of hexagonal boron nitride to mineral scale formation. NATURE COMMUNICATIONS, v. 13, n. 1, p. 10-pg., 2022-08-04. (19/07157-9, 13/08293-7, 16/18499-0)

CARVALHO, LUCAS A. M. C.; GARIJO, DANIEL; MEDEIROS, CLAUDIA BAUZER; GIL, YOLANDA; IEEE. Semantic Software Metadata for Workflow Exploration and Evolution. 2018 IEEE 14TH INTERNATIONAL CONFERENCE ON E-SCIENCE (E-SCIENCE 2018), v. N/A, p. 11-pg., 2018-01-01. (17/03570-3, 14/23861-4, 13/08293-7)

DOS SANTOS, RAMIRO MARCELO; DE SOUSA, LEONARDO EVARISTO; GALVAO, DOUGLAS SOARES; RIBEIRO JUNIOR, LUIZ ANTONIO. Tuning Penta-Graphene Electronic Properties Through Engineered Line Defects. SCIENTIFIC REPORTS, v. 10, n. 1, MAY 15 2020. (13/08293-7)

SILVA, CLEUTON DE SOUZA; CUSTODIO, ROGERIO. Assessment of pK(a) Determination for Monocarboxylic Acids with an Accurate Theoretical Composite Method: G4CEP. Journal of Physical Chemistry A, v. 123, n. 38, p. 8314-8320, SEP 26 2019. (13/08293-7, 17/11485-6)

JAQUES, YGOR MORAIS; GALVAO, DOUGLAS SOARES. Spreading patterns of high velocity nanodroplets impacting on suspended graphene. JOURNAL OF MOLECULAR LIQUIDS, v. 292, OCT 15 2019. (13/24500-2, 13/08293-7)

CAMPOS DE OLIVEIRA, FABIOLA MARTINS; BONIN, EDSON. Partitioning Convolutional Neural Networks to Maximize the Inference Rate on Constrained IoT Devices. FUTURE INTERNET, v. 11, n. 10, OCT 2019. (13/08293-7)

NASCIMENTO, LEANDRO COSTA; YANAGUI, KARINA; JOSE, JULIANA; CAMARGO, EDUARDO L. O.; GRASSI, MARIA CAROLINA B.; CUNHA, CAMILA P.; BRESSIANI, JOSE PRIME ANTONIO; CARVALHO, GUILHERME M. A.; CARVALHO, CARLOS ROBERTO; PRADO, PAULA F.; et al. Unraveling the complex genome of Saccharum spontaneum using Polyploid Gene Assembler. DNA Research, v. 26, n. 3, p. 205-216, JUN 2019. (13/08293-7, 14/09638-0, 12/05890-1)

CAMARGO, ANTONIO P.; NAKAHARA, THIAGO S.; FIRMINO, LUIZ E. R.; NETTO, PAULO H. M.; DO NASCIMENTO, JOAO B. P.; DONNARD, ELISA R.; GALANTE, PEDRO A. F.; CARAZZOLLE, MARCELO F.; MALNIC, BETTINA; PAPES, FABIO. Uncovering the mouse olfactory long non-coding transcriptome with a novel machine-learning model. DNA Research, v. 26, n. 4, p. 365-378, AUG 2019. (11/22611-6, 16/24471-0, 18/11860-4, 16/05379-6, 13/08293-7, 15/50371-0)

OLIVEIRA, ANDRE R.; JEAN, GERALDINE; FERTIN, GUILLAUME; DIAS, ULISSES; DIAS, ZANONI. Super short operations on both gene order and intergenic sizes. Algorithms for Molecular Biology, v. 14, n. 1, NOV 5 2019. (17/12646-3, 17/16246-0, 13/08293-7, 15/11937-9)

MARTINEZ, LEANDRO; SHIMIZU, SEISHI. Molecular Interpretation of Preferential Interactions in Protein Solvation: A Solvent-Shell Perspective by Means of Minimum-Distance Distribution Functions. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v. 13, n. 12, p. 6358-6372, DEC 2017. (13/08293-7, 13/05475-7, 10/16947-9)

OLIVEIRA, ELIEZER FERNANDO; DA SILVA AUTRETO, PEDRO ALVES; GALVO, DOUGLAS SOARES. On hardening silver nanocubes by high-velocity impacts: a fully atomistic molecular dynamics investigation. Journal of Materials Science, v. 53, n. 10, p. 7486-7492, MAY 2018. (13/08293-7, 16/18499-0)

LINTZMAYER, CARLA NEGRI; FERTIN, GUILLAUME; DIAS, ZANONI. Sorting permutations and binary strings by length-weighted rearrangements. THEORETICAL COMPUTER SCIENCE, v. 715, p. 35-59, MAR 8 2018. (14/20738-7, 14/19401-8, 13/01172-0, 15/11937-9, 13/08293-7)

OLIVEIRA, ELIEZER FERNANDO; DA SILVA AUTRETO, PEDRO ALVES; WOELLNER, CRISTIANO FRANCISCO; GALVAO, DOUGLAS SOARES. On the mechanical properties of novamene: A fully atomistic molecular dynamics and DFT investigation. Carbon, v. 139, p. 782-788, NOV 2018. (14/24547-1, 16/18499-0, 13/08293-7)

OLIVEIRA, ANDRE RODRIGUES; BRITO, KLAIRTON LIMA; DIAS, ULISSES; DIAS, ZANONI. On the Complexity of Sorting by Reversals and Transpositions Problems. JOURNAL OF COMPUTATIONAL BIOLOGY, v. 26, n. 11, p. 1223-1229, NOV 1 2019. (13/08293-7, 17/16246-0, 15/11937-9, 17/12646-3)

PRATES, ERICA TEIXEIRA; CROWLEY, MICHAEL F.; SKAF, MUNIR S.; BECKHAM, GREGG T.. Catalytic Mechanism of Aryl-Ether Bond Cleavage in Lignin by LigF and LigG. Journal of Physical Chemistry B, v. 123, n. 48, p. 10142-10151, DEC 5 2019. (13/08293-7, 16/04775-5)

WOELLNER, CRISTIANO F.; FREIRE, JOSE A.. Impact of the intermixed phase and the channel network on the carrier mobility of nanostructured solar cells. Journal of Chemical Physics, v. 144, n. 8, FEB 28 2016. (13/08293-7, 14/24547-1)

LIBERATO, MARCELO V.; SILVEIRA, RODRIGO L.; PRATES, ERICA T.; DE ARAUJO, EVANDRO A.; PELLEGRINI, VANESSA O. A.; CAMILO, CESAR M.; KADOWAKI, MARCO A.; NETO, MARIO DE O.; POPOV, ALEXANDER; SKAF, MUNIR S.; et al. Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism. SCIENTIFIC REPORTS, v. 6, APR 1 2016. (13/08293-7, 09/52840-7, 10/18773-8, 13/15582-5, 08/56255-9, 14/10448-1)

SOUZA, PAULO C. T.; TEXTOR, LARISSA C.; MELO, DENISE C.; NASCIMENTO, ALESSANDRO S.; SKAF, MUNIR S.; POLIKARPOV, IGOR. An alternative conformation of ER beta bound to estradiol reveals H12 in a stable antagonist position. SCIENTIFIC REPORTS, v. 7, JUN 14 2017. (13/08293-7, 14/22007-0, 12/24750-6)

CENSONI, LUCIANO; MUNIZ, HELOISA DOS SANTOS; MARTINEZ, LEANDRO. A network model predicts the intensity of residue-protein thermal coupling. Bioinformatics, v. 33, n. 14, p. 2106-2113, JUL 15 2017. (13/05475-7, 10/16947-9, 13/08293-7)

SILVA, CLEUTON DE SOUZA; CUSTODIO, ROGERIO. Empirical corrections in the G3X and G3X(CCSD) theories combined with a compact effective pseudopotential. THEORETICAL CHEMISTRY ACCOUNTS, v. 137, n. 2, JAN 25 2018. (13/08293-7, 17/11485-6)

ZINK, S.; MOURA, F. A.; ALVES DA SILVA AUTRETO, P.; GALVAO, D. S.; MIZAIKOFF, B.. Virtually imprinted polymers (VIPs): understanding molecularly templated materials via molecular dynamics simulations. Physical Chemistry Chemical Physics, v. 20, n. 19, p. 13145-13152, MAY 21 2018. (13/08293-7)

DEVI, M. MANOLATA; DOLAI, N.; SREEHALA, S.; JAQUES, Y. M.; MISHRA, R. S. KUMAR; GALVAO, DOUGLAS S.; TIWARY, C. S.; SHARMA, SUDHANSHU; BISWAS, KRISHANU. Morphology controlled graphene-alloy nanoparticle hybrids with tunable carbon monoxide conversion to carbon dioxide. NANOSCALE, v. 10, n. 18, p. 8840-8850, MAY 14 2018. (13/08293-7, 16/12341-5)

KABBANI, MOHAMAD A.; KOCHAT, VIDYA; BHOWMICK, SANJIT; SOTO, MATIAS; SOM, ANIRBAN; KRISHNADAS, K. R.; WOELLNER, CRISTIANO F.; JAQUES, YGOR M.; BARRERA, ENRIQUE V.; ASIF, SYED; et al. Consolidation of functionalized graphene at ambient temperature via mechano-chemistry. Carbon, v. 134, p. 491-499, AUG 2018. (13/08293-7, 16/12341-5, 16/12340-9)

FRANCO PINHEIRO MOREIRA, PEDRO AUGUSTO; DE AGUIAR VEIGA, ROBERTO GOMES; RIBEIRO, INGRID DE ALMEIDA; FREITAS, RODRIGO; HELFFERICH, JULIAN; DE KONING, MAURICE. Anomalous diffusion of water molecules at grain boundaries in ice I-h. Physical Chemistry Chemical Physics, v. 20, n. 20, p. 13944-13951, MAY 28 2018. (13/08293-7, 16/23891-6, 10/13902-4, 14/10294-4)

COSTA, GUSTAVO J.; BORIN, ANTONIO C.; CUSTODIO, ROGERIO; VIDAL, LUCIANO N.. Fully Anharmonic Vibrational Resonance Raman Spectrum of Diatomic Systems. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v. 14, n. 2, p. 843-855, FEB 2018. (13/08293-7, 17/11485-6)

LINTZMAYER, CARLA NEGRI; FERTIN, GUILLAUME; DIAS, ZANONI. Approximation algorithms for sorting by length-weighted prefix and suffix operations. THEORETICAL COMPUTER SCIENCE, v. 593, p. 26-41, AUG 16 2015. (13/08293-7, 14/20738-7, 14/19401-8, 13/01172-0)

SILVEIRA, RODRIGO L.; SKAF, MUNIR S.. Molecular Dynamics Simulations of Family 7 Cellobiohydrolase Mutants Aimed at Reducing Product Inhibition. Journal of Physical Chemistry B, v. 119, n. 29, p. 9295-9303, JUL 23 2015. (13/08293-7, 14/10448-1)

GARCEZ, K. M. S.; ANTONELLI, A.. Polyamorphism in tetrahedral substances: Similarities between silicon and ice. Journal of Chemical Physics, v. 143, n. 3, JUL 21 2015. (13/08293-7)

PICELLI, R.; VICENTE, W. M.; PAVANELLO, R.. Bi-directional evolutionary structural optimization for design-dependent fluid pressure loading problems. ENGINEERING OPTIMIZATION, v. 47, n. 10, p. 1324-1342, OCT 3 2015. (13/08293-7, 11/09730-6)

SILVA, CLEUTON DE SOUZA; PEREIRA, DOUGLAS HENRIQUE; CUSTODIO, ROGERIO. G4CEP: A G4 theory modification by including pseudopotential for molecules containing first-, second- and third-row representative elements. Journal of Chemical Physics, v. 144, n. 20, MAY 28 2016. (13/08293-7)

MACHADO, LEONARDO D.; OZDEN, SEHMUS; TIWARY, CHANDRASEKHAR; AUTRETO, PEDRO A. S.; VAJTAI, ROBERT; BARRERA, ENRIQUE V.; GALVAO, DOUGLAS S.; AJAYAN, PULICKEL M.. The structural and dynamical aspects of boron nitride nanotubes under high velocity impacts. Physical Chemistry Chemical Physics, v. 18, n. 22, p. 14776-14781, JUN 14 2016. (13/08293-7)

SHADMI, NITZAN; KREMEN, ANNA; FRENKEL, YIFTACH; LAPIN, ZACHARY J.; MACHADO, LEONARDO D.; LEGOAS, SERGIO B.; BITTON, ORA; RECHAV, KATYA; POPOVITZ-BIRO, RONIT; GALVAO, DOUGLAS S.; et al. Defect-Free Carbon Nanotube Coils. Nano Letters, v. 16, n. 4, p. 2152-2158, APR 2016. (13/08293-7)

SILVEIRA, RODRIGO L.; STOYANOV, STANISLAV R.; GUSAROV, SERGEY; SKAF, MUNIR S.; KOVALENKO, ANDRIY. Plant Biomass Recalcitrance: Effect of Hemicellulose Composition on Nanoscale Forces that Control Cell Wall Strength. Journal of the American Chemical Society, v. 135, n. 51, p. 19048-19051, DEC 25 2013. (13/08293-7)

LEPIKSON-NETO, JORGE; NASCIMENTO, LEANDRO C.; SALAZAR, MARCELA M.; CAMARGO, EDUARDO L. O.; CAIRO, JOAO P. F.; TEIXEIRA, PAULO J.; MARQUES, WESLEY L.; SQUINA, FABIO M.; MIECZKOWSKI, PIOTR; DECKMANN, ANA C.; et al. Flavonoid supplementation affects the expression of genes involved in cell wall formation and lignification metabolism and increases sugar content and saccharification in the fast-growing eucalyptus hybrid E-urophylla x E-grandis. BMC PLANT BIOLOGY, v. 14, NOV 19 2014. (13/08293-7, 12/22652-7)

COSTA, FILIPE DE O.; OIKAWA, MARINA A.; DIAS, ZANONI; GOLDENSTEIN, SIOME; ROCHA, ANDERSON DE REZENDE. Image Phylogeny Forests Reconstruction. IEEE Transactions on Information Forensics and Security, v. 9, n. 10, p. 1533-1546, OCT 2014. (13/08293-7, 10/05647-4)

FONSECA, ALEXANDRE F.; GALVAO, DOUGLAS S.. Self-tearing and self-peeling of folded graphene nanoribbons. Carbon, v. 143, p. 230-239, MAR 2019. (13/08293-7, 18/02992-4)

SOLIS, DANIEL A.; BORGES, DAIANE D.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.. Structural and Thermal Stability of Graphyne and Graphdiyne Nanoscroll Structures. ACS APPLIED MATERIALS & INTERFACES, v. 11, n. 3, p. 2670-2676, JAN 23 2019. (13/08293-7, 14/24547-1, 15/14703-9)

CHAKRAVARTY, DIBYENDU; TIWARY, CHANDRA SEKHAR; MACHADO, LEONARDO DANTAS; BRUNETTO, GUSTAVO; VINOD, SOUMYA; YADAV, RAM MANOHAR; GALVAO, DOUGLAS S.; JOSHI, SHRIKANT V.; SUNDARARAJAN, GOVINDAN; AJAYAN, PULICKEL M.. Zirconia-Nanoparticle-Reinforced Morphology-Engineered Graphene-Based Foams. Advanced Materials, v. 27, n. 31, p. 4534-4543, AUG 19 2015. (13/08293-7)

PEREIRA, DOUGLAS HENRIQUE; ROMERO ROCHA, CARLOS MURILO; MORGON, NELSON HENRIQUE; CUSTODIO, ROGERIO. G3(MP2)-CEP theory and applications for compounds containing atoms from representative first, second and third row elements of the periodic table. Journal of Molecular Modeling, v. 21, n. 8, AUG 2015. (13/08293-7)

PICELLI, R.; VICENTE, W. M.; PAVANELLO, R.; XIE, Y. M.. Evolutionary topology optimization for natural frequency maximization problems considering acoustic-structure interaction. FINITE ELEMENTS IN ANALYSIS AND DESIGN, v. 106, p. 56-64, NOV 15 2015. (13/08293-7, 11/09730-6, 13/20022-9)

MANIMUNDA, P.; NAKANISHI, Y.; JAQUES, Y. M.; SUSARLA, S.; WOELLNER, C. F.; BHOWMICK, S.; ASIF, S. A. S.; GALVAO, D. S.; TIWARY, C. S.; AJAYAN, P. M.. Nanoscale deformation and friction characteristics of atomically thin WSe2 and heterostructure using nanoscratch and Raman spectroscopy. 2D MATERIALS, v. 4, n. 4, DEC 2017. (13/08293-7, 16/12341-5, 16/12340-9)

OWUOR, PETER SAMORA; PARK, OK-KYUNG; WOELLNER, CRISTIANO F.; JALILOV, ALMAZ S.; SUSARLA, SANDHYA; JOYNER, JARIN; OZDEN, SEHMUS; DUY, LUONGXUAN; SALVATIERRA, RODRIGO VILLEGAS; VAJTAI, ROBERT; et al. Lightweight Hexagonal Boron Nitride Foam for CO2 Absorption. ACS NANO, v. 11, n. 9, p. 8944-8952, SEP 2017. (13/08293-7, 16/12340-9)

DAMASCENO, D. A.; MESQUITA, E.; RAJAPAKSE, R. N. K. D.. Mechanical Behavior of Nano Structures Using Atomic-Scale Finite Element Method (AFEM). LATIN AMERICAN JOURNAL OF SOLIDS AND STRUCTURES, v. 14, n. 11, p. 2046-2066, 2017. (15/00209-2, 12/17948-4, 13/08293-7, 13/23085-1)

DE SOUSA, JOSE MOREIRA; MACHADO, LEONARDO DANTAS; WOELLNER, CRISTIANO FRANCISCO; DA SILVA AUTRETO, PEDRO ALVES; GALVAO, DOUGLAS S.. Carbon Nanoscrolls at High Impacts: A Molecular Dynamics Investigation. MRS ADVANCES, v. 1, n. 20, p. 1423-1428, 2016. (13/08293-7, 14/24547-1)

WOELLNER, CRISTIANO FRANCISCO; DA SILVA AUTRETO, PEDRO ALVES; GALVAO, DOUGLAS S.. One Side-Graphene Hydrogenation (Graphone): Substrate Effects. MRS ADVANCES, v. 1, n. 20, p. 1429-1434, 2016. (13/08293-7, 14/24547-1)

CONTESINI, FABIANO JARES; LIBERATO, MARCELO VIZONA; RUBIO, MARCELO VENTURA; CALZADO, FELIPE; ZUBIETA, MARIANE PALUDETTI; RIANO-PACHON, DIEGO MAURICIO; SQUINA, FABIO MARCIO; BRACHT, FABRICIO; SKAF, MUNIR S.; DAMASIO, ANDRE RICARDO. Structural and functional characterization of a highly secreted alpha-L-arabinofuranosidase (GH62) from Aspergillus nidulans grown on sugarcane bagasse. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, v. 1865, n. 12, p. 1758-1769, DEC 2017. (13/08293-7, 12/20549-4, 14/04105-4, 14/15403-6, 13/24988-5, 14/23051-2, 08/58037-9)

OLIVEIRA, ANDRE R.; FERTIN, GUILLAUME; DIAS, ULISSES; DIAS, ZANONI. Sorting signed circular permutations by super short operations. Algorithms for Molecular Biology, v. 13, JUL 26 2018. (13/08293-7, 15/11937-9)

MELENDEZ, JUAN J.; GONZALEZ-ROMERO, ROBERT L.; ANTONELLI, ALEX. Quasiparticle bands and optical properties of SnSe from an ab initio approach. COMPUTATIONAL MATERIALS SCIENCE, v. 152, p. 107-112, SEP 2018. (13/08293-7, 13/14065-7)

LEITE, RODOLFO PAULA; FREITAS, RODRIGO; AZEVEDO, RODOLFO; DE KONING, MAURICE. The Uhlenbeck-Ford model: Exact virial coefficients and application as a reference system in fluid-phase free-energy calculations. Journal of Chemical Physics, v. 145, n. 19, NOV 21 2016. (13/08293-7)

OZDEN, SEHMUS; MACHADO, LEONARDO D.; TIWARY, CHANDRASEKHAR; AUTRETO, PEDRO A. S.; VAJTAI, ROBERT; BARRERA, ENRIQUE V.; GALVAO, DOUGLAS S.; AJAYAN, PULICKEL M.. Ballistic Fracturing of Carbon Nanotubes. ACS APPLIED MATERIALS & INTERFACES, v. 8, n. 37, p. 24819-24825, SEP 21 2016. (13/08293-7)

VINOD, SOUMYA; TIWARY, CHANDRA SEKHAR; MACHADO, LEONARDO D.; OZDEN, SEHMUS; VAJTAI, ROBERT; GALVAO, DOUGLAS S.; AJAYAN, PULICKEL M.. Synthesis of ultralow density 3D graphene-CNT foams using a two-step method. NANOSCALE, v. 8, n. 35, p. 15857-15863, SEP 21 2016. (13/08293-7)

GAUTAM, CHANDKIRAM; TIWARY, CHANDRA SEKHAR; LOSE, SUJIN; BRUNETTO, GUSTAVO; OZDEN, SEHMUS; VINOD, SOUMYA; RAGHAVAN, PRASANTH; BIRADAR, SANTOSHKUMAR; GALVAO, DOUGLAS SOARES; AJAYAN, PULICKEL M.. Synthesis of Low-Density, Carbon-Doped, Porous Hexagonal Boron Nitride Solids. ACS NANO, v. 9, n. 12, p. 12088-12095, DEC 2015. (13/08293-7)

TIM, CARLA ROBERTA; BOSSINI, PAULO SERGIO; KIDO, HUELITON WILIAN; MALAVAZI, IRAN; VON ZESKA KRESS, MARCIA REGINA; CARAZZOLLE, MARCELO FALSARELLA; PARIZOTTO, NIVALDO ANTONIO; RENNO, ANA CLAUDIA. Effects of low level laser therapy on inflammatory and angiogenic gene expression during the process of bone healing: A microarray analysis. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY, v. 154, p. 8-15, JAN 2016. (13/08293-7, 10/15335-0)

DE KONING, MAURICE; FAZZIO, ADALBERTO; ROQUE DA SILVA, ANTONIO JOSE; ANTONELLI, ALEX. On the nature of the solvated electron in ice I-h. Physical Chemistry Chemical Physics, v. 18, n. 6, p. 4652-4658, FEB 14 2016. (13/08293-7)

OZDEN, SEHMUS; BRUNETTO, GUSTAVO; KARTHISELVA, N. S.; GALVAO, DOUGLAS S.; ROY, AJIT; BAKSHI, SRINIVASA R.; TIWARY, CHANDRA S.; AJAYAN, PULICKEL M.. Controlled 3D Carbon Nanotube Structures by Plasma Welding. ADVANCED MATERIALS INTERFACES, v. 3, n. 13, JUL 8 2016. (13/08293-7)

COIMBRA, TIAGO A.; FACCIPIERI, JORGE H.; RUEDA, DANY S.; TYGEL, MARTIN. Common-reflection-point time migration. STUDIA GEOPHYSICA ET GEODAETICA, v. 60, n. 3, p. 500-530, JUL 2016. (13/08293-7)

DE SOUSA, J. M.; BOTARI, T.; PERIM, E.; BIZAO, R. A.; GALVAO, DOUGLAS S.. Mechanical and structural properties of graphene-like carbon nitride sheets. RSC ADVANCES, v. 6, n. 80, 2016. (13/08293-7)

KOHLER, MATEUS H.; GAVAZZONI, CRISTINA. Water Freezing in MoS2 Nanotubes. Journal of Physical Chemistry C, v. 123, n. 22, p. 13968-13975, JUN 6 2019. (17/18512-9, 13/08293-7)

OLIVEIRA, ELIEZER F.; MACHADO, LEONARDO D.; BAUGHMAN, RAY H.; GALVAO, DOUGLAS S.. Three-dimensional carbon nanotube networks from beta zeolite templates: Thermal stability and mechanical properties. COMPUTATIONAL MATERIALS SCIENCE, v. 182, SEP 2020. (13/08293-7, 16/18499-0, 19/07157-9)

FELIX, LEVI C.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.. Mechanical and energy-absorption properties of schwarzites. Carbon, v. 157, p. 670-680, FEB 2020. (13/08293-7, 18/11352-9)

GAAL, VLADIMIR; RODRIGUES, VARLEI; DANTAS, SOCRATES O.; GALVAO, DOUGLAS S.; FONSECA, ALEXANDRE F.. New Zero Poisson's Ratio Structures. PHYSICA STATUS SOLIDI-RAPID RESEARCH LETTERS, v. 14, n. 3, DEC 2019. (13/08293-7, 18/02992-4)

GONZALEZ-ROMERO, ROBERT L.; ANTONELLI, A.. Estimating carrier relaxation times in the Ba8Ga16Ge30 clathrate in the extrinsic regime. Physical Chemistry Chemical Physics, v. 19, n. 4, p. 3010-3018, 2017. (13/08293-7, 13/14065-7)

BAZZO, BARBARA REGINA; DE CARVALHO, LUCAS MIGUEL; CARAZZOLLE, MARCELO FALSARELLA; GUIMARAES PEREIRA, GONCALO AMARANTE; COLOMBO, CARLOS AUGUSTO. Development of novel EST-SSR markers in the macauba palm (Acrocomia aculeata) using transcriptome sequencing and cross-species transferability in Arecaceae species. BMC PLANT BIOLOGY, v. 18, NOV 12 2018. (14/07265-2, 13/08293-7)

COIMBRA, TIAGO A.; FACCIPIERI, JORGE H.; SPEGLICH, JOAO H.; GELIUS, LEIV-J.; TYGEL, MARTIN. Enhancement of diffractions in prestack domain by means of a finite-offset double-square-root traveltime. GEOPHYSICS, v. 84, n. 1, p. V81-V96, JAN-FEB 2019. (13/08293-7)

ALVAREZ-DONADO, RENE; CAJAHUARINGA, SAMUEL; ANTONELLI, ALEX. Revisiting the fragile-to-strong crossover in metallic glass-forming liquids: Application to CuxZrxAl100-2x alloy. PHYSICAL REVIEW MATERIALS, v. 3, n. 8, AUG 1 2019. (10/16970-0, 16/23891-6, 13/08293-7)

DE ALMEIDA, V, BRENO; CUNHA, DANIEL C.; PAVANELLO, RENATO. Topology optimization of bimorph piezoelectric energy harvesters considering variable electrode location. Smart Materials and Structures, v. 28, n. 8, AUG 2019. (13/08293-7)

JAQUES, Y. M.; MANIMUNDA, P.; NAKANISHI, Y.; SUSARLA, S.; WOELLNER, C. F.; BHOWMICK, S.; ASIF, S. A. S.; GALVAO, D. S.; TIWARY, C. S.; AJAYAN, P. M.. Differences in the Mechanical Properties of Monolayer and Multilayer WSe2/MoSe2. MRS ADVANCES, v. 3, n. 6-7, p. 373-378, 2018. (16/12340-9, 16/12341-5, 13/08293-7)

WOELLNER, CRISTIANO F.; BOTARI, TIAGO; PERIM, ERIC; GALVAO, DOUGLAS S.. Mechanical Properties of Schwarzites - A Fully Atomistic Reactive Molecular Dynamics Investigation. MRS ADVANCES, v. 3, n. 8-9, p. 448-453, 2018. (14/24547-1, 13/08293-7)

DE SOUSA, J. M.; AGUIAR, A. L.; GIRAO, E. C.; FONSECA, ALEXANDRE F.; SOUSA FILHO, A. G.; GALVAO, DOUGLAS S.. Mechanical Properties of Phagraphene Membranes: A Fully Atomistic Molecular Dynamics Investigation. MRS ADVANCES, v. 3, n. 1-2, p. 67-72, 2018. (13/08293-7, 16/00023-9)

BORGES, DAIANE DAMASCENO; WOELLNER, CRISTIANO F.; AUTRETO, PEDRO A. S.; GALVAO, DOUGLAS S.. Water/Alcohol Separation in Graphene Oxide Membranes: Insights from Molecular Dynamics and Monte Carlo Simulations. MRS ADVANCES, v. 3, n. 1-2, p. 109-114, 2018. (13/08293-7, 16/12340-9, 15/14703-9)

BORGES, DAIANE DAMASCENO; GALVAO, DOUGLAS S.. Schwarzites for Natural Gas Storage: A Grand - Canonical Monte Carlo Study. MRS ADVANCES, v. 3, n. 1-2, p. 115-120, 2018. (13/08293-7, 15/14703-9)

GONZALEZ-ROMERO, ROBERT L.; ANTONELLI, ALEX; CHAVES, ANDERSON S.; MELENDEZ, JUAN J.. Ultralow and anisotropic thermal conductivity in semiconductor As2Se3. Physical Chemistry Chemical Physics, v. 20, n. 3, p. 1809-1816, JAN 21 2018. (13/08293-7, 15/26434-2, 13/14065-7)

SALAMANCA, JUAN; AMARAL, JOSE NELSON; ARAUJO, GUIDO. Using Hardware-Transactional-Memory Support to Implement Thread-Level Speculation. IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, v. 29, n. 2, p. 466-480, FEB 2018. (13/08293-7, 15/12077-3)

CENSONI, LUCIANO; MARTINEZ, LEANDRO. Prediction of kinetics of protein folding with non-redundant contact information. Bioinformatics, v. 34, n. 23, p. 4034-4038, DEC 1 2018. (13/08293-7, 13/05475-7, 10/16947-9)

DE SOUSA, J. M.; AUTRETO, P. A. S.; GALVAO, D. S.. Hydrogenation Dynamics Process of Single-Wall Carbon Nanotube Twisted. Chemical Physics Letters, v. 739, JAN 2020. (13/08293-7)

ORENHA, RENATO PEREIRA; MORGON, NELSON HENRIQUE; CONTRERAS-GARCIA, JULIA; SILVA, GRAZIELE CAPPATO GUERRA; NAGURNIAK, GLAUCIO REGIS; PIOTROWSKI, MAURICIO JEOMAR; CARAMORI, GIOVANNI FINOTO; MUNOZ-CASTRO, ALVARO; PARREIRA, RENATO LUIS TAME. How does the acidic milieu interfere in the capability of ruthenium nitrosyl complexes to release nitric oxide?. NEW JOURNAL OF CHEMISTRY, v. 44, n. 3, p. 773-779, JAN 21 2020. (11/07623-8, 19/00543-0, 17/24856-2, 13/08293-7)

REGINO, ANDRE GOMES; DOS REIS, JULIO CESAR; BONACIN, RODRIGO; MORSHED, AHSAN; SELLIS, TIMOS; CORCHO, OSCAR. Link maintenance for integrity in linked open data evolution: Literature survey and open challenges. SEMANTIC WEB, v. 12, n. 3, p. 517-541, 2021. (13/08293-7, 18/08082-0, 18/14199-7, 17/02325-5)

SILVEIRA, RODRIGO L.; KNOTT, BRANDON C.; PEREIRA, CAROLINE S.; CROWLEY, MICHAEL F.; SKAF, MUNIR S.; BECKHAM, GREGG T.. Transition Path Sampling Study of the Feruloyl Esterase Mechanism. Journal of Physical Chemistry B, v. 125, n. 8, p. 2018-2030, MAR 4 2021. (15/25031-1, 17/01151-3, 16/22956-7, 13/08293-7, 14/10448-1)

TOSI, MAURO DALLE LUCCA; DOS REIS, JULIO CESAR. SciKGraph: A knowledge graph approach to structure a scientific field. Journal of Informetrics, v. 15, n. 1, FEB 2021. (13/08293-7, 17/02325-5)

BOTARI, T.; PERIM, E.; AUTRETO, P. A. S.; VAN DUIN, A. C. T.; PAUPITZ, R.; GALVAO, D. S.. Mechanical properties and fracture dynamics of silicene membranes. Physical Chemistry Chemical Physics, v. 16, n. 36, p. 19417-19423, 2014. (13/08293-7, 13/09536-0)

ROMERO ROCHA, CARLOS MURILO; ROSARIO RODRIGUES, JOSE AUGUSTO; SAMENHO MORAN, PAULO JOSE; CUSTODIO, ROGERIO. An interpretation of the phenol nitration mechanism in the gas phase using G3(MP2)//B3-CEP theory. Journal of Molecular Modeling, v. 20, n. 12, DEC 2014. (13/08293-7)

GELIUS, LEIV-J.; TYGEL, MARTIN. Migration-velocity building in time and depth from 3D (2D) Common-Reflection-Surface (CRS) stacking - theoretical framework. STUDIA GEOPHYSICA ET GEODAETICA, v. 59, n. 2, p. 253-282, APR 2015. (13/08293-7)

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MEINHARDT, LYNDEL W.; LACERDA COSTA, GUSTAVO GILSON; THOMAZELLA, DANIELA P. T.; TEIXEIRA, PAULO JOSE P. L.; CARAZZOLLE, MARCELO FALSARELLA; SCHUSTER, STEPHAN C.; CARLSON, JOHN E.; GUILTINAN, MARK J.; MIECZKOWSKI, PIOTR; FARMER, ANDREW; et al. Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthoraroreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases. BMC Genomics, v. 15, FEB 27 2014. (13/08293-7)

GARCEZ, K. M. S.; ANTONELLI, A.. Pressure-induced transformations in amorphous silicon: A computational study. Journal of Applied Physics, v. 115, n. 6, FEB 14 2014. (13/08293-7)

PEREIRA, CAROLINE S.; SILVEIRA, RODRIGO L.; DUPREE, PAUL; SKAF, MUNIR S.. Effects of Xylan Side-Chain Substitutions on Xylan-Cellulose Interactions and Implications for Thermal Pretreatment of Cellulosic Biomass. Biomacromolecules, v. 18, n. 4, p. 1311-1321, APR 2017. (13/08293-7, 14/10448-1, 15/25031-1)

LOPEZ, ALVARO J.; BARROS, EMILIA P.; MARTINEZ, LEANDRO. On the Interpretation of subtilisin Carlsberg Time-Resolved Fluorescence Anisotropy Decays: Modeling with Classical Simulations. JOURNAL OF CHEMICAL INFORMATION AND MODELING, v. 60, n. 2, p. 747-755, FEB 2020. (13/08293-7, 18/24293-0, 10/16947-9)

JOYNER, JARIN; OLIVEIRA, ELIEZER F.; YAMAGUCHI, HISATO; KATO, KEIKO; VINOD, SOUMYA; GALVAO, DOUGLAS S.; SALPEKAR, DEVASHISH; ROY, SOUMYABRATA; MARTINEZ, ULISES; TIWARY, CHANDRA S.; et al. Graphene Supported MoS2 Structures with High Defect Density for an Efficient HER Electrocatalysts. ACS APPLIED MATERIALS & INTERFACES, v. 12, n. 11, p. 12629-12638, MAR 18 2020. (13/08293-7, 16/18499-0, 19/07157-9)

CAMACHO, THAIS APARECIDA SILVA; DO ROSARIO, VANDERSON MARTINS; NAPOLI, OTAVIO OLIVEIRA; BORIN, EDSON. PB(3)Opt: Profile-based biased Bayesian optimization to select computing clusters on the cloud. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, v. N/A, p. 19-pg., 2022-12-22. (13/08293-7)

LUIS FILIPE DO VALE LIMA; JOSUE LABAKI; EUCLIDES MESQUITA. STATIONARY DYNAMIC RESPONSE OF A CIRCULAR RIGID FOUNDATION PARTIALLY SUPPORTED BY A FLEXIBLE PILE AND INTERACTING WITH A HALF-SPACE. LATIN AMERICAN JOURNAL OF SOLIDS AND STRUCTURES, v. 17, n. 8, 2020-11-09. (13/08293-7, 17/01450-0, 12/17948-4)

PEREIRA JUNIOR, MARCELO L.; DE SOUSA, JOSE. M.; BRANDAO, WJEFFERSON H. S.; GALVAO, DOUGLAS. S.; FONSECA, ALEXANDRE F.; RIBEIRO JUNIOR, LUIZ A.. Exploring the elastic properties and fracture patterns of Me-graphene monolayers and nanotubes through reactive molecular dynamics simulations. Chemical Physics Letters, v. 830, p. 6-pg., 2023-09-08. (13/08293-7, 20/02044-9)

CARLOS, THAYRINE DIAS; BEZERRA, LEYDIANE BARBOSA; VIEIRA, MAYANE MARQUES; SARMENTO, RENATO ALMEIDA; PEREIRA, DOUGLAS HENRIQUE; CAVALLINI, GRASIELE SOARES. Fenton-type process using peracetic acid: Efficiency, reaction elucidations and ecotoxicity. JOURNAL OF HAZARDOUS MATERIALS, v. 403, FEB 5 2021. (13/08293-7, 17/11485-6)

ALVAREZ-DONADO, REND; ANTONELLI, ALEX. Splitting up entropy into vibrational and configurational contributions in bulk metallic glasses: A thermodynamic approach. PHYSICAL REVIEW RESEARCH, v. 2, n. 1, FEB 25 2020. (13/08293-7, 16/23891-6, 10/16970-0)

MORGON, NELSON H.; DE SOUZA, AGUINALDO R.. 8(19) molecular knot: a theoretical analysis of the electronic structure using an ONIOM approach. Journal of Molecular Modeling, v. 27, n. 2, FEB 2021. (13/08293-7)

LOPES, HEITOR NIGRO; MAHFOUD, JARIR; PAVANELLO, RENATO. High natural frequency gap topology optimization of bi-material elastic structures and band gap analysis. STRUCTURAL AND MULTIDISCIPLINARY OPTIMIZATION, v. 63, n. 5, JAN 2021. (19/05393-7, 13/08293-7)

CHAVES, ANDERSON S.; LARSON, DANIEL T.; KAXIRAS, EFTHIMIOS; ANTONELLI, ALEX. Out-of-plane thermoelectric performance for p-doped GeSe. PHYSICAL REVIEW B, v. 105, n. 20, p. 10-pg., 2022-05-06. (13/08293-7, 15/26434-2, 17/26105-4, 10/16970-0, 16/23891-6, 19/26088-8)

ZONGG, ZHIYOU; MAZURKEWICH, SCOTT; PEREIRA, CAROLINE S.; FU, HAOHAO; CAI, WENSHENG; SHAO, XUEGUANG; SKAF, MUNIR S.; LARSBRIN, JOHAN; LO LEGGIO, LEILA. Mechanism and biomass association of glucuronoyl esterase: an alpha/beta hydrolase with potential in biomass conversion. NATURE COMMUNICATIONS, v. 13, n. 1, p. 10-pg., 2022-03-18. (15/25031-1, 13/08293-7)

BOLLIS, EDSON; MAIA, HELENA; PEDRINI, HELIO; AVILA, SANDRA. Weakly supervised attention-based models using activation maps for citrus mite and insect pest classification. COMPUTERS AND ELECTRONICS IN AGRICULTURE, v. 195, p. 11-pg., 2022-04-01. (20/09838-0, 13/08293-7, 17/12646-3)

DO ROSARIO, VANDERSON MARTINS; ZINSLY, RAFAEL; RIGO, SANDRO; BORIN, EDSON; IEEE COMP SOC. Employing Simulation to Facilitate the Design of Dynamic Binary Translators. 2021 IEEE 33RD INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING (SBAC-PAD 2021), v. N/A, p. 10-pg., 2021-01-01. (13/08293-7)

PORTO, CAIO M.; SANTANA, LUCAS C.; MORGON, NELSON H.. Theoretical investigation of the cooperative effect of solvent: a case study. Physical Chemistry Chemical Physics, v. 24, n. 23, p. 13-pg., 2022-05-18. (13/08293-7)

DE ASSIS ELIAS, DANILO RODRIGUES; GRANATO, ENZO; DE KONING, MAURICE.

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BRITO, KLAIRTON LIMA; ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI; SETUBAL, JC; SILVA, WM. Sorting by Reversals and Transpositions with Proportion Restriction. ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, BSB 2020, v. 12558, p. 12-pg., 2020-01-01. (19/27331-3, 13/08293-7, 17/12646-3, 15/11937-9)

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BRANDAO LEAL, PAULO VITOR; PEREIRA, DOUGLAS HENRIQUE; PAPINI, RISIA MAGRIOTIS; MAGRIOTIS, ZUY MARIA. Effect of dimethyl sulfoxide intercalation into kaolinite on etheramine adsorption: experimental and theoretical investigation. JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING, v. 9, n. 4, AUG 2021. (17/11485-6, 13/08293-7)

MACHADO, LEONARDO D.; BIZAO, RAFAEL A.; PUGNO, NICOLA M.; GALVAO, DOUGLAS S.. Controlling Movement at Nanoscale: Curvature Driven Mechanotaxis. SMALL, v. 17, n. 35, JUL 2021. (19/07157-9, 16/18499-0, 13/08293-7)

SIDARTA-OLIVEIRA, DAVI; JARA, CARLOS POBLETE; FERRUZZI, ADRIANO J.; SKAF, MUNIR S.; VELANDER, WILLIAM H.; ARAUJO, ELIANA P.; VELLOSO, LICIO A.. SARS-CoV-2 receptor is co-expressed with elements of the kinin-kallikrein, renin-angiotensin and coagulation systems in alveolar cells. SCIENTIFIC REPORTS, v. 10, n. 1, NOV 11 2020. (13/08293-7, 13/07607-8)

DUARI, SURAJIT; BISWAS, SUBRATA; ROY, ARNAB; MAITY, SRABANI; MISHRA, ABHISHEK KUMAR; SOUZA, AGUINALDO R.; ELSHARIF, ASMA M.; MORGON, NELSON H.; BISWAS, SRIJIT. egioselective N-Functionalization of Tautomerizable Heterocycles through Methyl Trifluoromethanesulfonate-Catalyzed Substitution of Alcohols and Alkyl Group Migration. ADVANCED SYNTHESIS & CATALYSIS, v. 364, n. 4, p. 865-872, FEB 15 2022. (19/12294-5, 13/08293-7)

FELIX, LEVI C.; GALVAO, DOUGLAS S.. Guided fractures in graphene mechanical diode-like structures. Physical Chemistry Chemical Physics, v. 24, n. 22, p. 6-pg., 2022-05-05. (13/08293-7)

KRUGER, KLEBER; PANNAIN, RICARDO; AZEVEDO, RODOLFO. DONUTS: An efficient method for checkpointing in non-volatile memories. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, v. N/A, p. 19-pg., 2023-01-24. (19/26702-8, 13/08293-7)

BOLLIS, EDSON; PEDRINI, HELIO; AVILA, SANDRA; IEEE COMP SOC. Weakly Supervised Learning Guided by Activation Mapping Applied to a Novel Citrus Pest Benchmark. 2020 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION WORKSHOPS (CVPRW 2020), v. N/A, p. 10-pg., 2020-01-01. (13/08293-7, 14/12236-1, 17/12646-3, 17/16246-0)

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DE SOUSA, J. M.; MACHADO, L. D.; WOELLNER, C. F.; MEDINA, M.; AUTRETO, P. A. S.; GALVAO, D. S.. Boron nitride nanotube peapods at ultrasonic velocity impacts: a fully atomistic molecular dynamics investigation. JOURNAL OF PHYSICS-CONDENSED MATTER, v. 35, n. 33, p. 9-pg., 2023-08-23. (13/08293-7)

LI, CHENXI; ZHANG, XIANG; OLIVEIRA, ELIEZER F.; PUTHIRATH, ANAND B.; NEUPANE, MAHESH R.; WEIL, JAMES D.; BIRDWELL, A. GLEN; IVANOV, TONY G.; KONG, SEOYUN; GRAY, TIA; et al. Systematic comparison of various oxidation treatments on diamond surface. Carbon, v. 182, p. 725-734, SEP 2021. (19/07157-9, 13/08293-7)

ZUCATTI, VICTOR; LUI, HUGO F. S.; PITZ, DIOGO B.; WOLF, WILLIAM R.. Assessment of reduced-order modeling strategies for convective heat transfer. NUMERICAL HEAT TRANSFER PART A-APPLICATIONS, v. 77, n. 7, p. 702-729, APR 2 2020. (18/11410-9, 13/07375-0, 13/08293-7, 19/18809-7)

GUIMARAES, ANTONIO; LACALLE, LUIS; RODAMILANS, CHARLES B.; BORIN, EDSON. High-performance IO for seismic processing on the cloud. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, v. 33, n. 18, SI, SEP 25 2021. (13/08293-7, 19/12783-6)

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BRITO, KLAIRTON LIMA; ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI. Reversals and transpositions distance with proportion restriction. JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, v. 19, n. 4, AUG 2021. (19/27331-3, 17/12646-3, 17/16246-0, 13/08293-7, 15/11937-9)

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CAJAHUARINGA, SAMUEL; ANTONELLI, ALEX. Non-equilibrium free-energy calculation of phase-boundaries using LAMMPS. COMPUTATIONAL MATERIALS SCIENCE, v. 207, p. 10-pg., 2022-05-01. (13/08293-7, 15/26434-2, 17/26105-4, 10/16970-0, 16/23891-6, 19/26088-8, 21/03224-3)

PITZ, DIOGO B.; WOLF, WILLIAM R.. Coriolis force effects on radial convection in a cylindrical annulus. INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER, v. 189, p. 14-pg., 2022-06-15. (13/08293-7)

RIBEIRO, INGRID DE ALMEIDA; DE KONING, MAURICE; MOLINERO, VALERIA. Is It Possible to Follow the Structural Evolution of Water in "No-Man's Land" Using a Pulsed-Heating Procedure?. Journal of Physical Chemistry Letters, v. 13, n. 4, p. 5-pg., 2022-02-03. (16/23891-6, 13/08293-7)

TROMER, RAPHAEL M.; FELIX, LEVI C.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.. A DFT investigation of the electronic, optical, and thermoelectric properties of pentadiamond. Chemical Physics Letters, v. 763, JAN 16 2021. (13/08293-7)

CHAVES, ANDERSON S.; GONZALEZ-ROMERO, ROBERT LUIS; MELENDEZ, JUAN J.; ANTONELLI, ALEX. Investigating charge carrier scattering processes in anisotropic semiconductors through first-principles calculations: the case of p-type SnSe. Physical Chemistry Chemical Physics, v. 23, n. 2, p. 900-913, JAN 14 2021. (15/26434-2, 16/23891-6, 17/26105-4, 13/08293-7, 19/26088-8, 10/16970-0)

DUTRA, FELIPE RIBEIRO; SILVA, CLEUTON DE SOUZA; CUSTODIO, ROGERIO. On the Accuracy of the Direct Method to Calculate pK(a) from Electronic Structure Calculations. Journal of Physical Chemistry A, v. 125, n. 1, p. 65-73, JAN 14 2021. (13/08293-7, 17/11485-6)

SONORA, MARTIN; MARTINEZ, LEANDRO; PANTANO, SERGIO; MACHADO, MATIAS R.. Wrapping Up Viruses at Multiscale Resolution: Optimizing PACKMOL and SIRAH Execution for Simulating the Zika Virus. JOURNAL OF CHEMICAL INFORMATION AND MODELING, v. 61, n. 1, p. 408-422, JAN 25 2021. (10/16947-9, 13/08293-7, 18/14274-9, 18/24293-0)

RIBEIRO, INGRID DE ALMEIDA; DE KONING, MAURICE. Grain-Boundary Sliding in Ice I-h: Tribology and Rheology at the Nanoscale. Journal of Physical Chemistry C, v. 125, n. 1, p. 627-634, JAN 14 2021. (13/08293-7, 16/23891-6)

PARIDA, SANTANU; SAHOO, MADHUSMITA; ABHARANA, N.; TROMER, RAPHAEL M.; GALVAO, DOUGLAS S.; DHARA, SANDIP. Effect of Oxygen and Aluminum Incorporation on the Local Structure of GaN Nanowires: Insight from Extended X-ray Absorption Fine Structure Analysis. Journal of Physical Chemistry C, v. 125, n. 5, p. 3225-3234, FEB 11 2021. (13/08293-7)

MARTINEZ, LEANDRO. CellListMap.jl: Efficient and customizable cell list implementation for calculation of pairwise particle properties within a cutoff. COMPUTER PHYSICS COMMUNICATIONS, v. 279, p. 12-pg., 2022-10-01. (10/16947-9, 13/08293-7, 18/14274-9, 18/24293-0)

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DO ESPIRITO SANTO, JACQUELINE MIDLEJ; DE PAULA, ERICH VINICIUS; MEDEIROS, CLAUDIA BAUZER; GUIZZARDI, G; GAILLY, F; MACIEL, RSP. Exploring Semantics in Clinical Data Interoperability. ADVANCES IN CONCEPTUAL MODELING, ER 2019, v. 11787, p. 10-pg., 2019-01-01. (16/14172-6, 13/08293-7)

LINHARES, ALISSON; RUSA, HENRIQUE; FORMIGA, DANIEL; AZEVEDO, RODOL FO; IEEE. A SystemC profiling framework to improve fixed-point hardware utilization. 33RD SYMPOSIUM ON INTEGRATED CIRCUITS AND SYSTEMS DESIGN (SBCCI 2020), v. N/A, p. 6-pg., 2020-01-01. (13/08293-7)

CRUZ, ALLEFE BARBOSA; CIRIBELLI, NICOLAS NASCIMENTO; CUNHA, CAMILA LUIZA; NASCIMENTO, ISABELE RODRIGUES; HOLZBACH, JULIANA CRISTINA; PEREIRA, DOUGLAS HENRIQUE. Theoretical and experimental study of the diastereoisomers (2S) and (2R)-naringenin-6-C-beta-D-glucopyranoside obtained from Clitoria guianensis. Journal of Molecular Modeling, v. 29, n. 3, p. 9-pg., 2023-03-01. (13/08293-7, 17/11485-6)

ALEXANDRINO, ALEXSANDRO OLIVEIRA; BRITO, KLAIRTON LIMA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI. Reversal and Indel Distance With Intergenic Region Information. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, v. 20, n. 3, p. 13-pg., 2023-05-01. (13/08293-7, 19/27331-3, 15/11937-9, 17/12646-3)

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GALVIS, ANDRES F.; SANTOS-FLOREZ, PEDRO A.; SOLLERO, PAULO; DE KONING, MAURICE; WROBEL, LUIZ C.. Multiscale model of the role of grain boundary structures in the dynamic intergranular failure of polycrystal aggregates. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, v. 362, p. 33-pg., 2020-04-15. (13/08293-7)

LIMA, DANIEL RODRIGUES; DE AGUIAR FILHO, SILVIO QUINTINO; CAMARGO DO OH, LAURA BEATRIZ; DOS SANTOS PEREIRA, ANNA KARLA; PEREIRA, DOUGLAS HENRIQUE. Theoretical study of internal rotational barriers of electrons donating and electrons withdrawing groups in aromatic compounds. HELIYON, v. 6, n. 9, p. 7-pg., 2020-09-01. (17/11485-6, 13/08293-7)

TEIXEIRA, MARCOS; AVILA, SANDRA; ASSOC COMP MACHINERY. What should we pay attention to when classifying violent videos?. ARES 2021: 16TH INTERNATIONAL CONFERENCE ON AVAILABILITY, RELIABILITY AND SECURITY, v. N/A, p. 10-pg., 2021-01-01. (13/08293-7, 17/16246-0)

ANAYA-JAIMES, L. M.; VICENTE, W. M.; PAVANELLO, R.. Metamaterials design with a desired thermal expansion using a multi-material BESO method. STRUCTURAL AND MULTIDISCIPLINARY OPTIMIZATION, v. 65, n. 12, p. 17-pg., 2022-12-01. (13/08293-7)

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OLIVEIRA, ELIEZER F.; NEUPANE, MAHESH R.; LI, CHENXI; KANNAN, HARIKISHAN; ZHANG, XIANG; PUTHIRATH, ANAND B.; SHAH, PANKAJ B.; BIRDWELL, A. GLEN; IVANOV, TONY G.; VAJTAI, ROBERT; et al. A reactive molecular dynamics study of the hydrogenation of diamond surfaces. COMPUTATIONAL MATERIALS SCIENCE, v. 200, DEC 2021. (16/18499-0, 19/07157-9, 13/08293-7)

ZUCATTI, VICTOR; WOLF, WILLIAM. Data-driven closure of projection-based reduced order models for unsteady compressible flows. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, v. 386, DEC 1 2021. (19/18809-7, 18/11410-9, 13/08293-7)

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CAETANO, DANIEL L. Z.; CARVALHO, SIDNEY J. DE; V. BOSSA, GUILHERME; MAY, SYLVIO. Monte Carlo simulations and mean-field modeling of electric double layers at weakly and moderately charged spherical macroions. Physical Review E, v. 104, n. 3, SEP 23 2021. (18/01841-2, 19/19662-0, 13/08293-7, 17/21772-2)

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CANDIDO, VITOR FIDALGO; MATUSALEM, FILIPE; DE KONING, MAURICE. Melting conditions and entropies of superionic water ice: Free-energy calculations based on hybrid solid/liquid reference systems. Journal of Chemical Physics, v. 158, n. 6, p. 10-pg., 2023-02-14. (20/06896-0, 18/16572-7, 16/23891-6, 13/08293-7)

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DE KONING, MAURICE. Crystal imperfections in ice I-h. Journal of Chemical Physics, v. 153, n. 11, p. 13-pg., 2020-09-21. (13/08293-7, 16/23891-6)

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DE CARVALHO, JOAO P. L.; KUZMA, BRAEDY; ARAUJO, GUIDO; ASSOC COMP MACHINERY. Acceleration Opportunities in Linear Algebra Applications via Idiom Recognition. ICPE'20: COMPANION OF THE ACM/SPEC INTERNATIONAL CONFERENCE ON PERFORMANCE ENGINEERING, v. N/A, p. 2-pg., 2020-01-01. (13/08293-7, 16/15337-9, 19/01110-0)

ARAUJO, EVANDRO A.; DIAS, ARTUR HERMANO SAMPAIO; KADOWAKI, MARCO A. S.; PIYADOV, VASILY; PELLEGRINI, VANESSA O. A.; URIO, MATEUS B.; RAMOS, LUIZ P.; SKAF, MUNIR S.; POLIKARPOV, IGOR. Impact of cellulose properties on enzymatic degradation by bacterial GH48 enzymes: Structural and mechanistic insights from processive Bacillus licheniformis Cel48B cellulase. Carbohydrate Polymers, v. 264, p. 13-pg., 2021-04-12. (14/00769-5, 13/08293-7, 15/13684-0, 19/17350-0)

CHININI, GUILHERME LUIZ; CUSTODIO, ROGERIO. Systematic Convergence of the Numerical Taylor Series to the Best Standard and Its Potential Implication for the Development of Composite Methods. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v. 17, n. 4, p. 13-pg., 2021-03-10. (13/08293-7, 17/11485-6)

BONOTTO, BRUNO; WANNER, LUCAS; PANNAIN, RICARDO; AZEVEDO, RODOLFO; IEEE. Bringing Energy Information to the Instruction Set. 2020 X BRAZILIAN SYMPOSIUM ON COMPUTING SYSTEMS ENGINEERING (SBESC), v. N/A, p. 8-pg., 2020-01-01. (13/08293-7)

DE CARVALHO, JOAO P. L.; HONORIO, BRUNO C.; BALDASSIN, ALEXANDRO; ARAUJO, GUIDO; IEEE. Improving Transactional Code Generation via Variable Annotation and Barrier Elision. 2020 IEEE 34TH INTERNATIONAL PARALLEL AND DISTRIBUTED PROCESSING SYMPOSIUM IPDPS 2020, v. N/A, p. 10-pg., 2020-01-01. (19/04536-9, 13/08293-7, 16/15337-9, 18/15519-5)

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SIQUEIRA, GABRIEL; ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ZANONI. Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions. Algorithms for Molecular Biology, v. 16, n. 1, OCT 13 2021. (17/12646-3, 15/11937-9, 13/08293-7, 19/27331-3)

CUNHA, DANIEL CANDELORO; DE ALMEIDA, BRENO VINCENZO; LOPES, HEITOR NIGRO; PAVANELLO, RENATO. Finite variation sensitivity analysis for discrete topology optimization of continuum structures. STRUCTURAL AND MULTIDISCIPLINARY OPTIMIZATION, v. 64, n. 6, OCT 2021. (13/08293-7, 19/05393-7, 19/19237-7, 20/07391-9)

TRENTIN, LUCAS N.; PEREIRA, CAROLINE S.; SILVEIRA, RODRIGO L.; HILL, STEFAN; SORIEUL, MATHIAS; SKAF, MUNIR S.. Nanoscale Wetting of Crystalline Cellulose. Biomacromolecules, v. 22, n. 10, p. 4251-4261, OCT 11 2021. (19/17373-0, 13/08293-7, 14/10448-1, 15/25031-1)

MEIYAZHAGAN, ASHOKKUMAR; SERLES, PETER; SALPEKAR, DEVASHISH; OLIVEIRA, ELIEZER FERNANDO; ALEMANY, LAWRENCE B.; FU, RIQIANG; GAO, GUANHUI; ARIF, TAIB; VAJTAI, ROBERT; SWAMINATHAN, VENKATARAMAN; et al. Gas-Phase Fluorination of Hexagonal Boron Nitride. Advanced Materials, v. 33, n. 52, OCT 2021. (19/07157-9, 16/18499-0, 13/08293-7)

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CHAVES, ANDERSON SILVA; SILVA, MURILO AGUIAR; ANTONELLI, ALEX. Computational prediction of high thermoelectric performance in As₂Se₃ by engineering out-of-equilibrium defects. Physical Chemistry Chemical Physics, v. 26, n. 5, p. 7-pg., 2024-01-09. (17/26105-4, 15/26434-2, 16/23891-6, 19/26088-8, 10/16970-0, 13/08293-7)

DE ALMEIDA, BRENO VINCENZO; PAVANELLO, RENATO; LANGELAAR, MATTHIJS. Topology optimization of smart structures with embedded piezoelectric stack actuators using a composite geometry projection method. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, v. 429, p. 32-pg., 2024-06-15. (13/08293-7, 22/06811-0, 20/07391-9)

CRUZ, A. B.; PEREIRA, A. K. DOS SANTOS; PEREIRA, D. H.. Structural and Electronic Analysis of Sulfonamide Coordination with Platinum: A Density Functional Theory Study. RUSSIAN JOURNAL OF COORDINATION CHEMISTRY, v. 50, n. 11, p. 21-pg., 2024-12-22. (23/17727-2, 13/08293-7, 17/11485-6)

FEITOSA, LUCAS; MIOTTO, RENATO; WOLF, WILLIAM. Analysis of intermittent vortex pairing for a transitional flow past a NACA0012 airfoil via a multidimensional empirical mode decomposition. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 9-pg., 2024-01-01. (13/08293-7, 22/09196-4, 21/06448-0, 22/08567-9)

DE O SILVA, LEANDRO JUNI; WOLF, WILLIAM R.; VINUESA, RICARDO. Adverse-pressure-gradient effects on extreme events and intermittency in the turbulent boundary layer of a NACA0012 at 12° angle of attack. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 13-pg., 2024-01-01. (13/08293-7, 22/00256-4, 21/06448-0, 23/01657-5)

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MIOTTO, RENATO; ZIGUNOV, FERNANDO; WOLF, WILLIAM. Assessment of Pressure Estimation Methods Using Image Velocimetry Data: Insights from Unstructured Mesh Analysis. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 13-pg., 2024-01-01. (13/08293-7, 22/09196-4, 21/06448-0, 23/13431-1)

CHAVES, LEVY; BISSOTO, ALCEU; VALLE, EDUARDO; AVILA, SANDRA. The Performance of Transferability Metrics Does Not Translate to Medical Tasks. DOMAIN ADAPTATION AND REPRESENTATION TRANSFER, DART 2023, v. 14293, p. 10-pg., 2024-01-01. (13/08293-7, 20/09838-0, 22/09606-8, 19/19619-7)

SCHIAVO, LUIZ A. C. A.; WOLF, WILLIAM R.; OLSON, BRITTON J.; AZEVEDO, JODO LUIZ F.. High-Fidelity Numerical Simulations of Supersonic Channel Flows with IsothermalWalls. AIAA SCITECH 2021 FORUM, v. N/A, p. 13-pg., 2021-01-01. (16/03985-6, 13/07375-0, 13/08293-7, 14/07623-6)

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BISSOTO, ALCEU; BARATA, CATARINA; VALLE, EDUARDO; AVILA, SANDRA. Test-Time Selection for Robust Skin Lesion Analysis. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION, MICCAI 2023 WORKSHOPS, v. 14393, p. 10-pg., 2023-01-01. (13/08293-7, 19/19619-7, 22/09606-8, 20/09838-0)

KHATUN, SALMA; ALANWOKO, ONYEDIKACHI; PATHIRAGE, VIMUKTHI; DE OLIVEIRA, CAIQUE C.; TROMER, RAPHAEL M.; AUTRETO, PEDRO A. S.; GALVAO, DOUGLAS S.; BATZILL, MATTHIAS. Solid State Reaction Epitaxy, A New Approach for Synthesizing Van der Waals heterolayers: The Case of Mn and Cr on Bi₂Se₃. ADVANCED FUNCTIONAL MATERIALS, v. 34, n. 28, p. 11-pg., 2024-03-12. (13/08293-7)

FIDALGO CANDIDO, VITOR; GOMES DE AGUIAR VEIGA, ROBERTO; DE KONING, MAURICE. Generating proton-disordered ice configurations using orientational simulated annealing. Journal of Chemical Physics, v. 161, n. 6, p. 5-pg., 2024-08-14. (13/08293-7, 18/16572-7, 19/17874-0, 16/23891-6)

OLIVEIRA, CAIQUE C.; GALVAO, DOUGLAS S.; AUTRETO, PEDRO A. S.. Selective Hydrogenation Promotes the Anisotropic Thermoelectric Properties of TPDH-Graphene. Journal of Physical Chemistry C, v. 128, n. 15, p. 7-pg., 2024-03-28. (13/08293-7)

DE CARVALHO, PEDRO OLIVEIRA MARIZ; CUSTODIO, ROGERIO. Continuous approximation for linear combination coefficients: Exploring a neglected concept. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1242, p. 7-pg., 2024-11-05. (13/08293-7, 17/11485-6)

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OLIVEIRA, ANDRE RODRIGUES; JEAN, GERALDINE; FERTIN, GUILLAUME; DIAS, ULISSES; DIAS, ZANONI; ALVES, R. Super Short Reversals on Both Gene Order and Intergenic Sizes. ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, BSB 2018, v. 11228, p. 12-pg., 2018-01-01. (17/12646-3, 15/11937-9, 13/08293-7, 17/16246-0, 17/16871-1)

OLIVEIRA, ANDRE RODRIGUES; BRITO, KLAIRTON LIMA; DIAS, ZANONI; DIAS, ULISSES; ALVES, R. Sorting by Weighted Reversals and Transpositions. ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, BSB 2018, v. 11228, p. 12-pg., 2018-01-01. (17/12646-3, 15/11937-9, 13/08293-7, 17/16246-0, 17/16871-1)

ZEGARRA, MAICOL; PEREIRA, MARCIO; MARTORELL, XAVIER; ARAUJO, GUIDO; IEEE. Automatic Scan Parallelization in OpenMP. 2017 INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING WORKSHOPS (SBAC-PADW), v. N/A, p. 6-pg., 2017-01-01. (13/08293-7)

SOUSA, RAFAEL; PEREIRA, MARCIO; QUINTAO PEREIRA, FERNANDO MAGNO; ARAUJO, GUIDO; IEEE. Data Coherence Analysis and Optimization for Heterogeneous Computing. 2017 29TH INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING (SBAC-PAD), v. N/A, p. 8-pg., 2017-01-01. (13/08293-7)

SARAIVA, MARCIO DE CARVALHO; MEDEIROS, CLAUDIA BAUZER; IEEE. Finding out Topics in Educational Materials Using their Components. 2017 IEEE FRONTIERS IN EDUCATION CONFERENCE (FIE), v. N/A, p. 7-pg., 2017-01-01. (13/08293-7)

PEREIRA, MARCIO M.; SOUSA, RAFAEL C. F.; ARAUJO, GUIDO; DESUPINSKI, BR; OLIVIER, SL; TERBOVEN, C; CHAPMAN, BM; MULLER, MS. Compiling and Optimizing OpenMP 4.X Programs to OpenCL and SPIR. SCALING OPENMP FOR EXASCALE PERFORMANCE AND PORTABILITY (IWOMP 2017), v. 10468, p. 14-pg., 2017-01-01. (13/08293-7)

OROSA, LOIS; AZEVEDO, RODOLFO; IEEE. Temporal Frequent Value Locality. 2016 IEEE 27TH INTERNATIONAL CONFERENCE ON APPLICATION-SPECIFIC SYSTEMS, ARCHITECTURES AND PROCESSORS (ASAP), v. N/A, p. 6-pg., 2016-01-01. (13/08293-7, 14/03840-2)

LEITE, RODOLFO PAULA; SANTOS-FLOREZ, PEDRO ANTONIO; DE KONING, MAURICE. Uhlenbeck-Ford model: Phase diagram and corresponding-states analysis. PHYSICAL REVIEW E, v. 96, n. 3, p. 7-pg., 2017-09-11. (13/08293-7)

SOLIS, DANIEL; WOELLNER, CRISTIANO; BORGES, DAIANE D.; GALVAO, DOUGLAS S.. Mechanical and Thermal Stability of Graphyne and Graphdiyne Nanoscrolls. RS ADVANCE, v. 2, n. 2, p. 6-pg., 2017-01-01. (16/12340-9, 13/08293-7)

FELIX, LEVI C.; AMBEKAR, RUSHIKESH; TROMER, RAPHAEL M.; WOELLNER, CRISTIANO F.; RODRIGUES, VARLEI; AJAYAN, PULICKEL M.; TIWARY, CHANDRA S.; GALVAO, DOUGLAS S.. Schwarzites and Triply Periodic Minimal Surfaces: From Pure Topology Mathematics to Macroscale Applications. SMALL, v. N/A, p. 14-pg., 2024-06-14. (13/08293-7)

DUTRA, FELIPE RIBEIRO; CUSTODIO, ROGERIO. Comparative assessment of the direct and isodesmic methods for pKa calculation of monocarboxylic acids using density functional theory. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1237, p. 10-pg., 2024-05-07. (13/08293-7, 17/11485-6, 21/03201-3)

SIQUEIRA, GABRIEL; OLIVEIRA, ANDRE RODRIGUES; ALEXANDRINO, ALEXSANDRO OLIVEIRA; JEAN, GERALDINE; FERTIN, GUILLAUME; DIAS, ZANONI. Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs. Journal of Heuristics, v. 30, n. 5-6, p. 21-pg., 2024-05-31. (21/13824-8, 13/08293-7, 15/11937-9, 22/13555-0)

DEDA, TARCISIO C.; WOLF, WILLIAM R.; DAWSON, SCOTT T. M.. Assessing the robustness of neural networks trained for closed loop flow stabilization. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 10-pg., 2024-01-01. (19/19179-7, 13/08293-7, 21/06448-0, 22/00469-8)

FEITOSA, LUCAS; MIOTTO, RENATO; WOLF, WILLIAM. Analysis of dynamic stall for a simplified single blade vertical axis wind turbine configuration. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 10-pg., 2024-01-01. (22/08567-9, 13/07375-0, 13/08293-7, 22/09196-4, 21/06448-0)

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LUI, HUGO F. S.; WOLF, WILLIAM R.; RICCIARDI, TULIO R.; GAITONDE, DATTA, V. Analysis of streamwise vortices in a supersonic turbine cascade. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 10-pg., 2024-01-01. (13/08293-7, 21/06448-0, 19/26196-5, 21/14199-0)

RICCIARDI, TULIO R.; WOLF, WILLIAM R.; TAIRA, KUNIHIKO. Compressibility Effects in Airfoil Secondary Tones. AIAA SCITECH 2021 FORUM, v. N/A, p. 15-pg., 2021-01-01. (13/08293-7, 19/20437-0, 18/11835-0)

RAJEEV, KARTHIK; IPAVES, BRUNO; DE OLIVEIRA, CAIQUE CAMPOS; RAMAN, SREERAM PUNATHIL; KAR, SWASTIK; GALVAO, DOUGLAS; AUTRETO, PEDRO ALVES DA SILVA; TIWARY, CHANDRA SEKHAR. Enhanced Non-Invasive Radio Frequency Heating Using 2D Pyrite (Pyritene). SMALL METHODS, v. N/A, p. 13-pg., 2025-02-05. (13/08293-7, 24/11016-0, 24/11376-6)

DANTAS, CAYAN A.; RIBEIRO, BERNARDO LUIZ R.; WOLF, WILLIAM R.. Assessment of Transitional Airfoil Flows through the Lattice-Boltzmann Method Part I: Spanwise Periodic Flows. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 11-pg., 2024-01-01. (13/08293-7, 21/06448-0, 23/08768-7)

FERRAZ, AMAURI COELHO; PACHECO, LUCAS AGATTI; CARRION, RONALDO; MESQUITA, EUCLIDES. Coupling Modal Analysis with the BEM for the Transient Response of Bar Structures Interacting with Three-Dimensional Soil Profiles. LATIN AMERICAN JOURNAL OF SOLIDS AND STRUCTURES, v. 20, n. 6, p. 16-pg., 2023-01-01. (13/08293-7)

DOS SANTOS, EMANUEL J. A.; PEREIRA JUNIOR, MARCELO L.; TROMER, RAPHAEL M.; GALVAO, DOUGLAS S.; RIBEIRO JUNIOR, LUIZ A.. Exploring the electronic and mechanical properties of the recently synthesized nitrogen-doped amorphous monolayer carbon. NANOSCALE, v. N/A, p. 11-pg., 2024-12-17. (13/08293-7)

HAMADA, GABRIEL Y. R.; LUI, HUGO F. S.; WOLF, WILLIAM R.; JUNQUEIRA-JUNIOR, CARLOS, JR.. Characterization of boundary layers on isothermal and adiabatic curved surfaces of a supersonic turbine cascade. AIAA AVIATION FORUM AND ASCEND 2024, v. N/A, p. 12-pg., 2024-01-01. (13/08293-7, 21/06448-0, 19/26196-5, 22/00464-6)

FABRIS, GUILHERME S. L.; GALVAO, DOUGLAS S.; PAUPITZ, RICARDO. Reversible actuation of α-borophene nanoscrolls. Physical Chemistry Chemical Physics, v. 26, n. 15, p. 8-pg., 2024-03-21. (21/14977-2, 13/08293-7)

DIAS, ALEXANDRE C.; TROMER, RAPHAEL M.; GUTIERREZ, HUMBERTO R.; GALVAO, DOUGLAS S.; MOUJAES, ELIE A.. Raman Spectra and Excitonic Effects of the Novel Ta₂Ni₃Te₅ Monolayer. ACS OMEGA, v. N/A, p. 9-pg., 2024-11-28. (13/08293-7)

DOS SANTOS, ALBERTO M.; DA COSTA, CLAUBER H. S.; MARTINS, MANOELA; GOLDBECK, ROSANA; SKAF, MUNIR S.. Exploring the Structural and Dynamic Properties of a Chimeric Glycoside Hydrolase Protein in the Presence of Calcium Ions. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 25, n. 22, p. 16-pg., 2024-11-01. (22/04695-2, 20/02871-2, 22/04703-5, 13/08293-7, 19/17874-0)

NAKAMURA, ALINE MINALI; GODOY, ANDRE SCHUTZER; KADOWAKI, MARCO ANTONIO SEIKI; TRENTIN, LUCAS N.; GONZALEZ, SINKLER E. T.; SKAF, MUNIR S.; POLIKARPOV, IGOR. Structures of BlEst2 from Bacillus licheniformis in its propeptide and mature forms reveal autoinhibitory effects of the C-terminal domain. FEBS Journal, v. 291, n. 22, p. 21-pg., 2024-07-27. (19/17373-0, 13/08293-7, 21/08780-1, 19/17371-8)

NAPOLI, OTAVIO OLIVEIRA; DE ALMEIDA, ANA MARIA; BORIN, EDSON; BRETERNITZ JR, MAURICIO. Memory-efficient DRASiW Models. Neurocomputing, v. 610, p. 12-pg., 2024-09-05. (13/08293-7)

TROMER, RAPHAEL M.; PEREIRA JUNIOR, MARCELO L.; RIBEIRO JUNIOR, LUIZ. A.; GALVAO, DOUGLAS S.. Structural and electronic properties of amorphous silicon and germanium monolayers and nanotubes: A DFT investigation. Chemical Physics Letters, v. 856, p. 5-pg., 2024-09-27. (13/08293-7)

CACEFFO, RICARDO; WAINER, JACQUES; GAMA, GUILHERME; GARCIA, ISLENE; AZEVEDO, RODOLFO. Perceptual Learning Modules (PLM) in CS1: a Negative Result and a Methodological Warning. JOURNAL OF UNIVERSAL COMPUTER SCIENCE, v. 29, n. 9, p. 22-pg., 2023-01-01. (13/08293-7, 14/07502-4)

HECKER, NICOLAS; NAPOLI, OTAVIO O.; ASTUDILLO, CARLOS A.; NAVARRO, JOAO PAULO; SOUZA, ALAN; MIRANDA, DANIEL; VILLAS, LEANDRO A.; BORIN, EDSON. Computing seismic attributes with deep-learning models. 2023 INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING WORKSHOPS, SBAC-PADW, v. N/A, p. 5-pg., 2023-01-01. (13/08293-7)

MARTINS, NATHAN RABELO; DE CAMPOS VIANA, LUIZ AUGUSTO FERREIRA; DAS GRACAS SANTOS, ALAN ANTONIO; BORGES, DAIANE DAMASCENO; WELCH, ERIC; BORGES, PABLO DAMASCENO; SCOLFARO, LUISA. Computational study and ion diffusion analyses of native defects and indium alloying in β-Ga₂O₃ structures. JOURNAL OF VACUUM SCIENCE & TECHNOLOGY A, v. 42, n. 3, p. 11-pg., 2024-05-01. (13/08293-7)

LUI, HUGO F. S.; WOLF, WILLIAM R.; RICCIARDI, TULIO R.; GAITONDE, DATTA V.. Mach number effects on shock-boundary layer interactions over curved surfaces of supersonic turbine cascades. THEORETICAL AND COMPUTATIONAL FLUID DYNAMICS, v. 38, n. 4, p. 28-pg., 2024-07-11. (13/08293-7, 19/26196-5, 21/06448-0, 21/14199-0)

VICTORELLI, ELIANE ZAMBON; DOS REIS, JULIO CESAR. Evaluating User Experience in Information Visualization Systems: UXIV an Evaluation Questionnaire. HUMAN INTERFACE AND THE MANAGEMENT OF INFORMATION, HIMI 2023, PT I, v. 14015, p. 19-pg., 2023-01-01. (13/08293-7, 15/16528-0, 22/15816-5)

FELIX, ISAAC M.; ANDRADE, FABIANO M.; WOELLNER, CRISTIANO F.; GALVAO, DOUGLAS S.; TROMER, RAPHAEL M.. Tuning the electronic and optical properties of two-dimensional diboron-porphyrin by strain engineering: A density functional theory investigation. Chemical Physics Letters, v. 856, p. 6-pg., 2024-09-10. (13/08293-7)

DE CARVALHO, RAIMUNDO FRANCISCO; SILVA, THIAGO SOARES; PEREIRA, ANNA KARLA DOS SANTOS; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Theoretical and Experimental Study of the Stability of Thiamethoxam Under Different Environmental Conditions. PROCESSES, v. 12, n. 11, p. 11-pg., 2024-11-01. (23/17727-2, 13/08293-7, 17/11485-6)

TROMER, RAPHAEL M.; RIBEIRO, L. A.; GALVAO, DOUGLAS S.; DIAS, ALEXANDRE C.; MOUJAES, ELIE A.. On the mechanical, thermoelectric, and excitonic properties of Tetragraphene monolayer. MATERIALS TODAY COMMUNICATIONS, v. 39, p. 10-pg., 2024-06-01. (13/08293-7)

DIAS, ARTUR HERMANO SAMPAIO; CAO, YUANXIN; SKAF, MUNIR S.; DE VISSER, SAM P.. Machine learning-aided engineering of a cytochrome P450 for optimal bioconversion of lignin fragments. Physical Chemistry Chemical Physics, v. 26, n. 25, p. 11-pg., 2024-06-10. (13/08293-7, 21/10472-3)

TROMER, RAPHAEL M.; FELIX, LEVI C.; BAUGHMANN, RAY H.; GALVAO, DOUGLAS S.; WOELLNER, CRISTIANO F.. Transforming Two-Dimensional Carbon Allotropes into Three-Dimensional Ones through Topological Mapping: The Case of Biphenylene Carbon (Graphenylene). Journal of Physical Chemistry A, v. 128, n. 35, p. 7-pg., 2024-08-23. (13/08293-7, 18/11352-9)

LUI, HUGO F. S.; WOLF, WILLIAM R.. Convolutional Neural Networks for the Construction of Surrogate Models of Fluid Flows. AIAA SCITECH 2021 FORUM, v. N/A, p. 15-pg., 2021-01-01. (13/08293-7, 13/07375-0, 19/26196-5)

HAMADA, GABRIEL Y. R.; LUI, HUGO F. S.; WOLF, WILLIAM R.; RICCIARDI, TULIO R.; JUNQUEIRA-JUNIOR, CARLOS. Thermal boundary condition effects on shock boundary layer interactions of a supersonic turbine cascade. AIAA AVIATION 2023 FORUM, v. N/A, p. 9-pg., 2023-01-01. (13/08293-7, 21/06448-0, 19/26196-5, 22/00464-6)

BIHAIN, MURIELLY FERNANDA RIBEIRO; GOMES, ELLANE JACQUELINE COELHO MOREIRA; PEREIRA, ANNA KARLA DOS SANTOS; PEREIRA, DOUGLAS HENRIQUE. Theoretical study of the interaction of the potentially toxic contaminants Hg²⁺, CH₃Hg⁺, CH₃CH₂Hg⁺, and C₆H₅Hg⁺ with a B₃O₃ monolayer matrix. Journal of Molecular Modeling, v. 31, n. 4, p. 11-pg., 2025-04-01. (13/08293-7, 23/17727-2, 17/11485-6)

GUIMARAES, ANTONIO; PEREIRA, HILDER V. L.; VAN LEEUWEN, BARRY. Amortized Bootstrapping Revisited: Simpler, Asymptotically-Faster, Implemented. ADVANCES IN CRYPTOLOGY, ASIACRYPT 2023, PART VI, v. 14443, p. 33-pg., 2023-01-01. (13/08293-7, 21/09849-5, 19/12783-6)

CAJAHUARINGA, SAMUEL; ZANOTTO, LEANDRO N.; RIGO, SANDRO; YVIQUEL, HERVE; SKAF, MUNIR S.; ARAUJO, GUIDO. Ion-molecule collision cross-section calculations using trajectory in distributed. JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING, v. 191, p. 12-pg., 2024-04-26. (13/08293-7, 12/24750-6, 21/03224-3, 16/04963-6)

PIMENTEL, HELHE DAIANY CABRAL SILVA; BIHAIN, MURIELLY FERNANDA RIBEIRO; PEREIRA, ANNA KARLA DOS SANTOS; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Diethylaminoethyl cellulose and quaternary ammonium cellulose matrices as adsorbent materials for potentially toxic CrO₄^2-, Cr₂O₇^2-, SeO₃^2- and SeO₄^2- anions: A theoretical study. JOURNAL OF MOLECULAR LIQUIDS, v. 390, p. 11-pg., 2023-09-15. (13/08293-7, 17/11485-6)

SILVA, LAURA BARROS; CRUZ, ALLEFE BARBOSA; PEREIRA, DOUGLAS HENRIQUE; CASSANI, NATASHA MARQUES; RUIZ, URIEL ENRIQUE AQUINO; SANTOS, IGOR ANDRADE; MARTINS, DANIEL OLIVEIRA SILVA; NAKAHATA, DOUGLAS HIDEKI; SIMONI, DEBORAH DE ALENCAR; KANAVOS, IOANNIS; et al. Antiviral Activity of Pd(II) Complexes with Aminoadamantanes Against Arboviruses. CHEMISTRYSELECT, v. 9, n. 37, p. 11-pg., 2024-10-01. (21/10265-8, 22/08320-3, 21/08717-8, 17/11485-6, 13/08293-7, 23/14245-7)

CANESCHE, MICHAEL; ROSARIO, VANDERSON M.; BORIN, EDSON; QUINTAO PEREIRA, FERNANDO MAGNO. The Droplet Search Algorithm for Kernel Scheduling. ACM TRANSACTIONS ON ARCHITECTURE AND CODE OPTIMIZATION, v. 21, n. 2, p. 28-pg., 2024-06-01. (13/08293-7)

ROUT, ARPAN; PANDEY, PRAFULL; OLIVEIRA, ELIEZER FERNANDO; DA SILVA AUTRETO, PEDRO ALVES; GUMASTE, ANURAG; SINGH, AMIT; GALVAO, DOUGLAS SOARES; ARORA, AMIT; TIWARY, CHANDRA SEKHAR. Atomically locked interfaces of metal (Aluminum) and polymer (Polypropylene) using mechanical friction. Polymer, v. 169, p. 6-pg., 2019-04-15. (13/08293-7, 16/18499-0)

ROMANINI, E.; LABAKI, J.; MESQUITA, E.; SILVA, R. C.. Stationary Dynamic Stress Solutions for a Rectangular Load Applied within a 3D Viscoelastic Isotropic Full-Space. MATHEMATICAL PROBLEMS IN ENGINEERING, v. 2019, p. 12-pg., 2019-01-01. (13/08293-7, 17/01450-0)

BRITO, KLAIRTON LIMA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI; JANSSON, J; MARTINVIDE, C; VEGARODRIGUEZ, MA. Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem. ALGORITHMS FOR COMPUTATIONAL BIOLOGY (ALCOB 2018), v. 10849, p. 11-pg., 2018-01-01. (14/19401-8, 13/08293-7, 15/11937-9)

PISANI, FLAVIA; BORIN, EDSON; MARTINA, M; FORNANCIARI, W. Fog Vs. Cloud Computing: Should I Stay or Should I Go?. WORKSHOP PROCEEDINGS 2018: INTELLIGENT EMBEDDED SYSTEMS ARCHITECTURES AND APPLICATIONS (INTESA), v. N/A, p. 6-pg., 2018-01-01. (13/08293-7)

PEIXOTO, BRUNO MALVEIRA; AVILA, SANDRA; DIAS, ZANONI; ROCHA, ANDERSON; ACM. Breaking down violence: A deep-learning strategy to model and classify violence in videos. 13TH INTERNATIONAL CONFERENCE ON AVAILABILITY, RELIABILITY AND SECURITY (ARES 2018), v. N/A, p. 7-pg., 2019-01-01. (17/12646-3, 15/11937-9, 13/08293-7, 17/16246-0, 17/16871-1)

DO ROSARIO, VANDERSON MARTINS; HATO, MARIO MIKIO; AZEVEDO, RODOLFO; BORIN, EDSON; BIANCHINI, CD; DESOUZA, PSL; DEBARROS, COF; FERREIRA, RAC. A Methodology for Optimization of Interpreters. 2018 SYMPOSIUM ON HIGH PERFORMANCE COMPUTING SYSTEMS (WSCAD 2018), v. N/A, p. 8-pg., 2018-01-01. (13/08293-7)

GUIMARAES, ANTONIO; ARANHA, DIEGO F.; BORIN, EDSON. Optimized implementation of QC-MDPC code-based cryptography. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, v. 31, n. 18, p. 17-pg., 2019-09-25. (14/50704-7, 13/08293-7)

PEIXOTO, BRUNO; LAVI, BAHRAM; PEREIRA MARTIN, JOAO PAULO; AVILA, SANDRA; DIAS, ZANONI; ROCHA, ANDERSON; IEEE. TOWARD SUBJECTIVE VIOLENCE DETECTION IN VIDEOS. 2019 IEEE INTERNATIONAL CONFERENCE ON ACOUSTICS, SPEECH AND SIGNAL PROCESSING (ICASSP), v. N/A, p. 5-pg., 2019-01-01. (17/12646-3, 15/11937-9, 13/08293-7, 17/16246-0, 17/16871-1)

DOS SANTOS DANTASA, ANA PAULA; DE SOUZAA, CID CARVALHO; DIAS, ZANONI. A GRASP for the Convex Recoloring Problem in Graphs. ELECTRONIC NOTES IN THEORETICAL COMPUTER SCIENCE, v. 346, p. 13-pg., 2019-08-30. (17/12646-3, 18/04760-3, 15/11937-9, 13/08293-7, 17/16246-0)

DO ROSARIO, VANDERSON M.; BRETERNITZ, MAURICIO, JR.; BORIN, EDSON; IEEE. Efficiency and Scalability of Multi-Lane Capsule Networks (MLCN). 2019 31ST INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING (SBAC-PAD 2019), v. N/A, p. 8-pg., 2019-01-01. (13/08293-7)

CACEFFO, RICARDO; FRANK-BOLTON, PABLO; SOUZA, RENAN; AZEVEDO, RODOLFO; ACM. Identifying and Validating Java Misconceptions Toward a CS1 Concept Inventory. PROCEEDINGS OF THE 2019 ACM CONFERENCE ON INNOVATION AND TECHNOLOGY IN COMPUTER SCIENCE EDUCATION (ITICSE '19), v. N/A, p. 7-pg., 2019-01-01. (13/08293-7, 14/07502-4)

LUCCA TOSI, MAURO DALLE; DOS REIS, JULIO CESAR. Understanding the evolution of a scientific field by clustering and visualizing knowledge graphs. JOURNAL OF INFORMATION SCIENCE, v. 48, n. 1, p. 19-pg., 2020-07-09. (13/08293-7, 17/02325-5)

DE SOUSA, J. M.; WOELLNER, C. F.; MACHADO, L. D.; AUTRETO, P. A. S.; GALVAO, D. S.. Carbon Nanotube Peapods Under High-Strain Rate Conditions: A Molecular Dynamics Investigation. MRS ADVANCES, v. 5, n. 33-34, p. 8-pg., 2020-01-01. (13/08293-7)

MATTOS, LUIS; CESAR, DIVINO; SALAMANCA, JUAN; DE CARVALHO, JOAO P. L.; PEREIRA, MARCIO; ARAUJO, GUIDO; IEEE. DOACROSS Parallelization based on Component Annotation and Loop-carried Probability. 2018 30TH INTERNATIONAL SYMPOSIUM ON COMPUTER ARCHITECTURE AND HIGH PERFORMANCE COMPUTING (SBAC-PAD 2018), v. N/A, p. 4-pg., 2018-01-01. (13/08293-7, 16/15337-9, 15/04285-5)

FEITOSA, LUCAS; MIOTTO, RENATO; WOLF, WILLIAM. Analysis of coherent structures in dynamic stall via empirical mode decomposition and dynamic mode decomposition. AIAA AVIATION 2023 FORUM, v. N/A, p. 12-pg., 2023-01-01. (22/08567-9, 13/08293-7, 21/06448-0, 22/09196-4, 13/07375-0)

DA LUZ, GUSTAVO P. C. P.; NAPOLI, OTAVIO O.; DELGADO, J. V.; ROCHA, ANDERSON R.; BOCCATO, LEVY; BORIN, EDSON. An Evaluation of Temporal Neighborhood Coding Variants in Smartphone-Based Human Activity Recognition. INTELLIGENT SYSTEMS, BRACIS 2024, PT III, v. 15414, p. 13-pg., 2025-01-01. (13/08293-7)

DAS, RAKESH; DE OLIVEIRA, RAPHAEL BENJAMIM; TROMER, RAPHAEL; GALVAO, DOUGLAS S.; OWUOR, PETER SAMORA; KHAN, ABDULLAH; KATIYAR, NIRMAL KUMAR; MACHADO, LEONARDO DANTAS; TIWARY, CHANDRA SEKHAR. Wear resistance and conducting property of laser-melted copper-graphene composite. PROGRESS IN ADDITIVE MANUFACTURING, v. N/A, p. 16-pg., 2025-03-12. (13/08293-7)

ALVES, PATRICK; DELGADO, JAIME; GONZALEZ, LUIS; ROCHA, ANDERSON R.; BOCCATO, LEVY; BORIN, EDSON. Comparing LIME and SHAP Global Explanations for Human Activity Recognition. INTELLIGENT SYSTEMS, BRACIS 2024, PT III, v. 15414, p. 15-pg., 2025-01-01. (13/08293-7)

ARANHA, DIEGO F.; COSTACHE, ANAMARIA; GUIMARAES, ANTONIO; SORIA-VAZQUEZ, EDUARDO. HELIOPOLIS: Verifiable Computation over Homomorphically Encrypted Data from Interactive Oracle Proofs is Practical. ADVANCES IN CRYPTOLOGY - ASIACRYPT 2024, PT V, v. 15488, p. 33-pg., 2025-01-01. (13/08293-7, 19/12783-6, 21/09849-5)

SIQUEIRA, GABRIEL; ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; JEAN, GERALDINE; FERTIN, GUILLAUME; DIAS, ZANONI. Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions. BIOINFORMATICS RESEARCH AND APPLICATIONS, ISBRA 2023, v. 14248, p. 14-pg., 2023-01-01. (13/08293-7, 21/13824-8, 22/13555-0)

DEDA, TARCISIO C.; WOLF, WILLIAM R.; DAWSON, SCOTT T. M.. Application of Neural Network Surrogate Models for Flow Control. AIAA AVIATION 2023 FORUM, v. N/A, p. 10-pg., 2023-01-01. (13/08293-7, 19/19179-7, 21/06448-0, 22/00469-8)

MOREIRA, FARNEY COUTINHO; WOLFT, WILLIAM ROBERTO; AZEVEDO, JOAO LUIZ F.. Numerical Simulation of Non-Equilibrium Hypersonic Flows for the Reentry Trajectory of a Reusable Satellite. AIAA AVIATION 2022 FORUM, v. N/A, p. 18-pg., 2022-01-01. (21/02705-8, 13/08293-7, 13/07375-0)

PERIM, ERIC; MACHADO, LEONARDO DANTAS; GALVAO, DOUGLAS SOARES. A brief review on syntheses, structures, and applications of nanoscrolls. FRONTIERS IN MATERIALS, v. N/A, p. 7-pg., 2014-01-01. (13/08293-7)

DE SOUSA, J. M.; BOTARI, T.; PERIM, E.; BIZAO, R. A.; GALVAO, DOUGLAS S.. Mechanical and structural properties of graphene-like carbon nitride sheets. RSC ADVANCES, v. 6, n. 80, p. 7-pg., 2016-01-01. (13/08293-7)

NASCIMENTO, LEANDRO COSTA; SALAZAR, MARCELA MENDES; LEPIKSON-NETO, JORGE; OLIVEIRA CAMARGO, EDUARDO LEAL; PARREIRAS, LUCAS SALERA; GUIMARAES PEREIRA, GONCALO AMARANTE; CARAZZOLLE, MARCELO FALSARELLA. EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, v. N/A, p. 12-pg., 2017-10-24. (13/08293-7)

PORTO, CAIO M.; MORGON, NELSON H.. Analytical approach for the tunneling process in double well potentials using IRC calculations. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1187, OCT 1 2020. (13/08293-7)

DOS SANTOS, RAMIRO MARCELO; DE AGUIAR, ACRISIO LINS; MARTINS, JONATHAN DA ROCHA; DOS SANTOS, RENATO BATISTA; GALVAO, DOUGLAS SOARES; RIBEIRO JUNIOR, LUIZ ANTONIO. Structural and electronic properties of defective AlN/GaN hybrid nanostructures. COMPUTATIONAL MATERIALS SCIENCE, v. 183, OCT 2020. (13/08293-7)

DE AGUIAR FILHO, SILVIO QUINTINO; DOS SANTOS PEREIRA, ANNA KARLA; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Theoretical study of glyphosate adsorption potential on methylcellulose and cellulose xanthate matrices compared to activated carbon: role of biopolymers in the adsorption process. POLYMER BULLETIN, OCT 2021. (13/08293-7, 17/11485-6)

CRESSWELL, ROSALIE; DUPREE, RAY; BROWN, STEVEN P.; PEREIRA, CAROLINE S.; SKAF, MUNIR S.; SORIEUL, MATHIAS; DUPREE, PAUL; HILL, STEFAN. Importance of Water in Maintaining Softwood Secondary Cell Wall Nanostructure. Biomacromolecules, v. 22, n. 11, p. 4669-4680, NOV 8 2021. (13/08293-7, 15/25031-1)

ALEXANDRINO, ALEXSANDRO OLIVEIRA; OLIVEIRA, ANDRE RODRIGUES; DIAS, ULISSES; DIAS, ZANONI. Labeled Cycle Graph for Transposition and Indel Distance. JOURNAL OF COMPUTATIONAL BIOLOGY, NOV 2021. (17/12646-3, 13/08293-7, 15/11937-9, 19/27331-3)

CAETANO, DANIEL L. Z.; METZLER, RALF; CHERSTVY, ANDREY G.; DE CARVALHO, SIDNEY J.. Adsorption of lysozyme into a charged confining pore. Physical Chemistry Chemical Physics, v. 23, n. 48, NOV 2021. (13/08293-7, 18/01841-2, 19/19662-0)

TROMER, RAPHAEL M.; FREITAS, A.; FELIX, ISAAC M.; MORTAZAVI, BOHAYRA; MACHADO, L. D.; AZEVEDO, S.; PEREIRA, LUIZ FELIPE C.. Electronic, optical and thermoelectric properties of boron-doped nitrogenated holey graphene. Physical Chemistry Chemical Physics, v. 22, n. 37, p. 21147-21157, OCT 7 2020. (13/08293-7)

PARIS JUNIOR, JOSE ALBERTO; CAVICCHIOLI, MAURICIO; AMARAL MACHADO, RACHEL TEMPERANI; PAVAN, FERNANDO; NAKAHATA, DOUGLAS HIDEKI; CORBI, PEDRO PAULO; FERREIRA COSTA, ADAO MARCOS; PEREIRA, DOUGLAS HENRIQUE; MASSABNI, ANTONIO CARLOS. SYNTHESIS, CHARACTERIZATION, DFT MODELING AND IN VITRO ANTIMYCOBACTERIAL ACTIVITY ASSAYS OF A SILVER(I)-ISONIAZID COMPLEX. Química Nova, v. 44, n. 3, p. 278-283, 2021. (13/08293-7, 15/20882-3, 17/11570-3, 17/11485-6, 18/12062-4)

QUINTANILHA, MARIANA MAZZO; SCHIMITD, BIANCA ALVES; COSTA, ADAO MARCOS FERREIRA; NAKAHATA, DOUGLAS HIDEKI; SIMONI, DEBORAH DE ALENCAR; CLAVIJO, JUAN CARLOS TENORIO; PEREIRA, DOUGLAS HENRIQUE; MASSABNI, ANTONIO CARLOS; LUSTRI, WILTON ROGERIO; CORBI, PEDRO PAULO. A novel water-soluble platinum(II) complex with the amino acid deoxyalliin: synthesis, crystal structure, theoretical studies and investigations about its antibacterial activity. Journal of Molecular Structure, v. 1236, JUL 15 2021. (13/08293-7, 15/20882-3, 18/09860-6, 18/09856-9, 18/12590-0, 15/09833-0, 18/12062-4, 17/11485-6)

GUPTA, BRAMHA; AMBEKAR, RUSHIKESH S.; TROMER, RAPHAEL M.; GHOSAL, PARTHA SARATHI; SINHA, RUPAL; MAJUMDER, ABHRADEEP; KUMBHAKAR, PARTHA; AJAYAN, P. M.; GALVAO, DOUGLAS S.; GUPTA, ASHOK KUMAR; et al. Development of a schwarzite-based moving bed 3D printed water treatment system for nanoplastic remediation. RSC ADVANCES, v. 11, n. 32, p. 19788-19796, JUN 11 2021. (13/08293-7)

DA ROCHA, NICOLA LEONE; CUSTODIO, ROGERIO. On the role of vibrational selective scaling for the calculation of enthalpies of formation using a composite method. THEORETICAL CHEMISTRY ACCOUNTS, v. 139, n. 2, JAN 31 2020. (13/08293-7, 17/11485-6)

ALCANTARA, AMADEUS C. S.; ASSIS, ISRAEL; PRADA, DANIEL; MEHLE, KONRAD; SCHWAN, STEFAN; COSTA-PAIVA, LUCIA; SKAF, MUNIR S.; WROBEL, LUIZ C.; SOLLERO, PAULO. Patient-Specific Bone Multiscale Modelling, Fracture Simulation and Risk Analysis-A Survey. MATERIALS, v. 13, n. 1, JAN 1 2020. (13/08293-7, 18/18503-2)

SIERRA-GARCIA, ISABEL NATALIA; BELGINI, DAIANE R. B.; TORRES-BALLESTEROS, ADRIANA; PAEZ-ESPINO, DAVID; CAPILLA, RAMSES; SANTOS NETO, V, EUGENIO; GRAY, NEIL; DE OLIVEIRA, VALERIA MAIA. In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs. Science of The Total Environment, v. 715, MAY 1 2020. (11/14501-6, 13/08293-7)

SANTOS, THIAGO T.; DE SOUZA, LEONARDO L.; DOS SANTOS, ANDREZA A.; AVILA, SANDRA. Grape detection, segmentation, and tracking using deep neural networks and three-dimensional association. COMPUTERS AND ELECTRONICS IN AGRICULTURE, v. 170, MAR 2020. (13/08293-7, 17/16246-0)

REGO, JESSICA SANTOS; DE KONING, MAURICE. Density-functional theory prediction of the elastic constants of ice I-h. Journal of Chemical Physics, v. 152, n. 8, FEB 28 2020. (16/23891-6, 13/08293-7)

NAKAR, DEKEL; GORDEEV, GEORGY; MACHADO, LEONARDO D.; POPOVITZ-BIRO, RONIT; RECHAV, KATYA; OLIVEIRA, ELIEZER F.; KUSCH, PATRYK; JORIO, ADO; GALVAO, DOUGLAS S.; REICH, STEPHANIE; et al. Few-Wall Carbon Nanotube Coils. Nano Letters, v. 20, n. 2, p. 953-962, FEB 2020. (13/08293-7, 16/18499-0)

SILVA, THIAGO SOARES; CRUZ, ALLEFE BARBOSA; OLIVEIRA RODRIGUES, KARINNA GOMES; PEREIRA, DOUGLAS HENRIQUE. Brueckner Doubles variation of W1 theory (W1BD) adapted to pseudopotential: W1BDCEP theory. Journal of Molecular Modeling, v. 28, n. 9, p. 10-pg., 2022-09-01. (13/08293-7, 17/11485-6)

BEZERRA DE MELLO, FELLIPE DA SILVEIRA; VENEGA CORADINI, ALESSANDRO LUIS; CARAZZOLLE, MARCELO FALSARELLA; MANEIRA, CARLA; FURLAN, MONIQUE; GUIMARAES PEREIRA, GONCALO AMARANTE; TEIXEIRA, GLEIDSON SILVA. Genetic mapping of a bioethanol yeast strain reveals new targets for hydroxymethylfurfural- and thermotolerance. MICROBIOLOGICAL RESEARCH, v. 263, p. 13-pg., 2022-08-02. (16/12852-0, 15/06677-8, 13/08293-7, 16/02506-7, 14/26719-4, 18/03403-2)

LI, CHENXI; OLIVEIRA, ELIEZER F.; ZHANG, XIANG; BISWAS, ABHIJIT; ROY, SOUMYABRATA; PUTHIRATH, ANAND B.; RUZMETOV, DIMITRY A.; NEUPANE, MAHESH R.; WEIL, JAMES D.; BIRDWELL, GLEN; et al. Amination of Boron-Doped Diamond Surfaces. CHEMISTRY OF MATERIALS, v. 34, n. 16, p. 11-pg., 2022-08-02. (19/07157-9, 13/08293-7, 16/18499-0)

CRUZ, ALLEFE BARBOSA; DE CARVALHO, RAIMUNDO FRANCISCO; SILVA, THIAGO SOARES; SARMENTO, RENATO DE ALMEIDA; CAVALLINI, GRASIELE SOARES; PEREIRA, DOUGLAS HENRIQUE. Adsorptive capacity of a g-C3N4 matrix for thiamethoxam removal: A DFT study. COMPUTATIONAL AND THEORETICAL CHEMISTRY, v. 1215, p. 7-pg., 2022-07-20. (13/08293-7, 17/11485-6)

CAMARGO, ANTONIO P.; SOURKOV, VSEVOLOD; PEREIRA, GONCALO A. G.; CARAZZOLLE, MARCELO F.. RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences. NAR GENOMICS AND BIOINFORMATICS, v. 2, n. 1, p. 12-pg., 2020-03-01. (13/08293-7, 18/04240-0)

TESSER, RAFAEL KELLER; BORIN, EDSON. Containers in HPC: a survey. JOURNAL OF SUPERCOMPUTING, v. 79, n. 5, p. 69-pg., 2022-10-27. (13/08293-7, 19/12792-5)

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ALCANTARA, AMADEUS C. S.; FELIX, LEVI C.; GALVAO, DOUGLAS S.; SOLLERO, PAULO; SKAF, MUNIR S.. Devising Bone Molecular Models at the Nanoscale: From Usual Mineralized Collagen Fibrils to the First Bone Fibers Including Hydroxyapatite in the Extra-Fibrillar Volume. MATERIALS, v. 15, n. 6, p. 27-pg., 2022-03-01. (13/08293-7)

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BRANDAO, W. H. S.; DE SOUSA, J. M.; AGUIAR, A. L.; GALVAO, D. S.; RIBEIRO, LUIZ A.; FONSECA, ALEXANDRE F.. First-principles and reactive molecular dynamics study of the elastic properties of pentahexoctite-based nanotubes. MECHANICS OF MATERIALS, v. 183, p. 12-pg., 2023-05-31. (13/08293-7, 20/02044-9)

MIRIKHARAJI, ZAHRA; ABHISHEK, KUMAR; BISSOTO, ALCEU; BARATA, CATARINA; AVILA, SANDRA; VALLE, EDUARDO; CELEBI, M. EMRE; HAMARNEH, GHASSAN. A survey on deep learning for skin lesion segmentation. MEDICAL IMAGE ANALYSIS, v. 88, p. 40-pg., 2023-06-19. (19/19619-7, 13/08293-7)

BISSOTO, ALCEU; VALLE, EDUARDO; AVILA, SANDRA; IEEE COMP SOC. Debiasing Skin Lesion Datasets and Models? Not So Fast. 2020 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION WORKSHOPS (CVPRW 2020), v. N/A, p. 10-pg., 2020-01-01. (13/08293-7, 17/16246-0, 19/05018-1)

MEDEIROS, CLAUDIA BAUZER. The hidden dimension of open science: "Peopleware". PATTERNS, v. 2, n. 11, p. 4-pg., 2021-11-12. (13/08293-7)