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Comparative genomics of three strains of Pseudomonas putida detected in different environments of Coffea arabica plants and evaluation of the growth promotion potential in coffee

Grant number:14/11544-4
Support Opportunities:Regular Research Grants
Start date: December 01, 2014
End date: December 31, 2017
Field of knowledge:Biological Sciences - Genetics - Molecular Genetics and Genetics of Microorganisms
Principal Investigator:Jorge Maurício Costa Mondego
Grantee:Jorge Maurício Costa Mondego
Host Institution: Instituto Agronômico (IAC). Agência Paulista de Tecnologia dos Agronegócios (APTA). Campinas , SP, Brazil
City of the host institution:Campinas
Associated researchers:Carlos Augusto Colombo ; Marcelo Brocchi ; Marcelo Falsarella Carazzolle ; Márcio José da Silva

Abstract

Pseudomonas putida is a bacterial species with ability to colonize a wide range of environments. P. putida is known mainly as plant growth promoting bacteria. The production of auxins and siderophores by P. putida lead to the improvement of vegetal development, confer yield increment and give better protection against pathogens. During the annotation of C. arabica ESTs databank, we detected a considerable amount of Pseudomonas sequences, what suggest that Pseudomonads inhabit C. arabica plants. Through the isolation of bacteria from leaves (phylosphere), rizosphere and from the internal environment (endophytics) of C. arabica roots, five P. putida isolates were detected. The production of auxins and siderophores and resistance against caffeine and water stress were tested for the five isolates. Interestingly, a correlation between physiological data and environment of each isolate was detected. These project aims to verify the genomic differences among the isolates, correlating them to preliminary physiological data, which will be repeated and extended during the project. For that, three isolates, each one isolated from a different niche, will have its genome sequenced and compared. Such approach, that have been named as 'pan-genomics', aims to understand why organisms from the same species, sharing the same host, exhibit distinct ecological and physiological behaviors. In addition, these isolates will be inoculated in C. arabica seeds and data from plant growth will be recorded and correlated with data from bacterial physiology and genomics. This knowledge will allow a better exploitation of the potential of such Pseudomonas as coffee growth promoters. (AU)

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Scientific publications (5)
(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)
DE SOUSA, LEANDRO PIO; CIPRIANO, MATHEUS APARECIDO PEREIRA; FREITAS, SUELI DOS SANTOS; CARAZZOLLE, MARCELO FALSARELLA; DA SILVA, MARCIO JOSE; MONDEGO, JORGE MAURICIO COSTA. Genomic and physiological evaluation of two root associated Pseudomonas from Coffea arabica. MICROBIOLOGICAL RESEARCH, v. 263, p. 11-pg., . (14/11544-4)
DE SOUSA, LEANDRO PIO; PEREIRA CIPRIANO, MATHEUS APARECIDO; DA SILVA, MARCIO JOSE; ALVES PATRICIO, FLAVIA RODRIGUES; FREITAS, SUELI DOS SANTOS; CARAZZOLLE, MARCELO FALSARELLA; COSTA MONDEGO, JORGE MAURICIO. Functional genomics analysis of a phyllospheric Pseudomonas spp with potential for biological control against coffee rust. BMC Microbiology, v. 22, n. 1, p. 12-pg., . (14/11544-4)
DE SOUSA, LEANDRO PIO; DA SILVA, MARCIO JOSE; COSTA MONDEGO, JORGE MAURICIO. Leaf-associated bacterial microbiota of coffee and its correlation with manganese and calcium levels on leaves. GENETICS AND MOLECULAR BIOLOGY, v. 41, n. 2, p. 11-pg., . (14/11544-4)
DE SOUSA, LEANDRO PIO; DA SILVA, MARCIO JOSE; COSTA MONDEGO, JORGE MAURICIO. Leaf-associated bacterial microbiota of coffee and its correlation with manganese and calcium levels on leaves. GENETICS AND MOLECULAR BIOLOGY, v. 41, n. 2, p. 455-465, . (14/11544-4)
DE SOUSA, LEANDRO PIO; MONDEGO, JORGE MAURICIO COSTA. Leaf surface microbiota transplantation confers resistance to coffee leaf rust in susceptible Coffea arabica. FEMS MICROBIOLOGY ECOLOGY, v. 100, n. 6, p. 9-pg., . (14/11544-4)