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Signaling and regulatory network studies associated to the energy cane

Abstract

We intend to contribute by analysing physiology, regulatory elements, transcriptome and metabolome of commercial varieties and in crosses with ancestral species in field and greenhouse experiments. The most comprehensive study of sugarcane regulatory networks will be done with the use of Chip-Seq and RNAseq techniques. It will be possible to identify possible regulatory and promoter regions in the sugarcane reference genome sequenced and partially assembled by our group and collaborators. Through the use of Systems Biology and Synthetic Biology approaches, we will define the main targets or networks of genes for the improvement of sugarcane to increase its productivity, to change sucrose fiber and lignin content, and thus pave the way for the development of the Energy-Cane. The large volume of data generated will be stored in the SUCEST- FUN database (http://sucest-fun.org) where it is possible to evaluate and interrogate the data focusing on different aspects. (AU)

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Scientific publications (4)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
DINIZ, AUGUSTO LIMA; RODRIGUES DA SILVA, DANIELLE IZILDA; LEMBKE, CAROLINA GIMILIANI; LAMAS COSTA, MAXIMILLER DAL-BIANCO; TEN-CATEN, FELIPE; LI, FORREST; VILELA, ROMEL DUARTE; MENOSSI, MARCELO; WARE, DOREEN; ENDRES, LAURICIO; SOUZA, GLAUCIA MENDES. Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 21, n. 23 DEC 2020. Web of Science Citations: 0.
SOUZA, GLAUCIA MENDES; VAN SLUYS, MARIE-ANNE; LEMBKE, CAROLINA GIMILIANI; LEE, HAYAN; MARGARIDO, GABRIEL RODRIGUES ALVES; HOTTA, CARLOS TAKESHI; GAIARSA, JONAS WEISSMANN; DINIZ, AUGUSTO LIMA; OLIVEIRA, MAURO DE MEDEIROS; FERREIRA, SAVIO DE SIQUEIRA; NISHIYAMA, MILTON YUTAKA; TEN-CATEN, FELIPE; RAGAGNIN, GEOVANI TOLFO; ANDRADE, PABLO DE MORAIS; DE SOUZA, ROBSON FRANCISCO; NICASTRO, GIANLUCCA GONCALVES; PANDYA, RAVI; KIM, CHANGSOO; GUO, HUI; DURHAM, ALAN MITCHELL; CARNEIRO, MONALISA SAMPAIO; ZHANG, JISEN; ZHANG, XINGTAN; ZHANG, QING; MING, RAY; SCHATZ, MICHAEL C.; DAVIDSON, BOB; PATERSON, ANDREW H.; HECKERMAN, DAVID. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GIGASCIENCE, v. 8, n. 12 DEC 2019. Web of Science Citations: 3.
DINIZ, AUGUSTO L.; FERREIRA, SAVIO S.; TEN-CATEN, FELIPE; MARGARIDO, GABRIEL R. A.; DOS SANTOS, JOAO M.; BARBOSA, GERALDO V. DE S.; CARNEIRO, MONALISA S.; SOUZA, GLAUCIA M. Genomic resources for energy cane breeding in the post genomics era. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, v. 17, p. 1404-1414, 2019. Web of Science Citations: 0.
ZHANG, JISEN; ZHANG, XINGTAN; TANG, HAIBAO; ZHANG, QING; HUA, XIUTING; MA, XIAOKAI; ZHU, FAN; JONES, TYLER; ZHU, XINGUANG; BOWERS, JOHN; WAI, CHING MAN; ZHENG, CHUNFANG; SHIL, YAN; CHEN, SHUAI; XU, XIUMING; YUE, JINGJING; NELSONS, DAVID R.; HUANG, LIXIAN; LI, ZHEN; XU, HUIMIN; ZHOU, DONG; WANG, YONGJUN; HU, WEICHANG; LIN, JISHAN; DENG, YOUJIN; PANDEY, NEHA; MANCINI, MELINA; ZERPA, DESSIREE; NGUYEN, JULIE K.; WANG, LIMING; YU, LIANG; XIN, YINGHUI; GE, LIANGFA; ARRO, JIE; HAN, JENNIFER O.; CHAKRABARTY, SETU; PUSHKO, MARIJA; ZHANG, WENPING; MA, YANHONG; MA, PANPAN; LV, MINGJU; CHEN, FAMING; ZHENG, GUANGYONG; XU, JINGSHENG; YANG, ZHENHUI; DENG, FANG; CHEN, XUEQUN; LIAO, ZHENYANG; ZHANG, XUNXIAO; LIN, ZHICONG; LIN, HAI; YAN, HANSONG; KUANG, ZHENG; ZHONG, WEIMIN; LIANG, PINGPING; WANG, GUOFENG; YUAN, YUAN; SHI, JIAXIAN; HOU, JINXIANG; LIN, JINGXIAN; JIN, JINGJING; CAO, PEIJIAN; SHEN, QIAOCHU; JIANG, QING; ZHOU, PING; MA, YAYING; ZHANG, XIAODAN; XU, RONGRONG; LIU, JUAN; ZHOU, YONGMEI; JIA, HAIFENG; MA, QING; QI, RUI; ZHANG, ZHILIANG; FANG, JINGPING; FANG, HONGKUN; SONG, JINJIN; WANG, MENGJUAN; DONG, GUANGRUI; WANG, GANG; CHEN, ZHENG; MA, TENG; LIU, HONG; DHUNGANA, SINGHA R.; HUSS, SARAH E.; YANG, XIPING; SHARMA, ANUPMA; TRUJILLO, JHON H.; MARTINEZ, MARIA C.; HUDSON, MATTHEW; RIASCOS, JOHN J.; SCHULER, MARY; CHEN, LI-QING; BRAUN, DAVID M.; LI, LEI; YU, QINGYI; WANG, JIANPING; WANG, KAI; SCHATZ, MICHAEL C.; HECKERMAN, DAVID; VAN SLUYS, MARIE-ANNE; SOUZA, GLAUCIA MENDES; MOORE, PAUL H.; SANKOFF, DAVID; VANBUREN, ROBERT; PATERSON, ANDREW H.; NAGAI, CHIFUMI; MING, RAY. Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.. Nature Genetics, v. 50, n. 11, p. 1565+, NOV 2018. Web of Science Citations: 37.

Please report errors in scientific publications list by writing to: cdi@fapesp.br.