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Associating complex networks with effective feature spaces

Grant number: 15/18942-8
Support type:Scholarships in Brazil - Post-Doctorate
Effective date (Start): May 01, 2016
Effective date (End): May 31, 2017
Field of knowledge:Physical Sciences and Mathematics - Physics
Principal Investigator:Luciano da Fontoura Costa
Grantee:Cesar Henrique Comin
Home Institution: Instituto de Física de São Carlos (IFSC). Universidade de São Paulo (USP). São Carlos , SP, Brazil
Associated research grant:11/50761-2 - Models and methods of e-Science for life and agricultural sciences, AP.TEM

Abstract

There has been an increasing interest in applying complex networks to model systems composed by many elements, specially in cases where such elements interact in a non-trivial manner. Many studies developed in the area aim at defining a model to explain certain properties of the connectivity, such as the degree distribution and community structure, and dynamics, such as phase transitions and vulnerability, of the system under study. Such models are usually based on singular principles acting on the connectivity of all elements of the system. Well-known examples of such principles are the preferential attachment and the small-world property. We aim at establishing a distinct approach to complex systems modeling by assuming the existence of a set of features related to the system, which can be as large as necessary in order to explain the system topology. In this context, the network evolution is seen as a recurring relationship between the influence of node features on the network topology and the subsequent acting of the topology to modify such features. Therefore, the network can be considered as being embedded in an effective feature space, in which the nodes adjust their positions and connectivity along time. Our goal is to develop a methodology to uncover such space, and show that features belonging to this space, which oftentimes cannot be properly observed, directly act on the system connectivity. The methodology will be applied to a number of network models, as well as networks representing the topology of real-world systems such as street crossings, blood vessel bifurcations and airlines between airports.

Scientific publications (17)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
OUELLETTE, JULIE; TOUSSAY, XAVIER; COMIN, CESAR H.; COSTA, LUCIANO DA F.; HO, MIRABELLE; LACALLE-AURIOLES, MARIA; FREITAS-ANDRADE, MOISES; LIU, QING YAN; LECLERC, SONIA; PAN, YOULIAN; LIU, ZIYING; THIBODEAU, JEAN-FRANCOIS; YIN, MELISSA; CARRIER, MICAEL; MORSE, CAMERON J.; VAN DYKEN, PETER; BERGIN, CHRISTOPHER J.; BAILLET, SYLVAIN; KENNEDY, CHRISTOPHER R.; TREMBLAY, MARIE-EVE; BENOIT, YANNICK D.; STANFORD, WILLIAM L.; BURGER, DYLAN; STEWART, DUNCAN J.; LACOSTE, BAPTISTE. Vascular contributions to 16p11.2 deletion autism syndrome modeled in mice. NATURE NEUROSCIENCE, v. 23, n. 9 JUL 2020. Web of Science Citations: 0.
SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F. Malleability of complex networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, AUG 2019. Web of Science Citations: 0.
DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F. Connecting network science and information theory. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 515, p. 641-648, FEB 1 2019. Web of Science Citations: 0.
RODRIGUEZ, MAYRA Z.; COMIN, CESAR H.; CASANOVA, DALCIMAR; BRUNO, ODEMIR M.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.; RODRIGUES, FRANCISCO A. Clustering algorithms: A comparative approach. PLoS One, v. 14, n. 1 JAN 15 2019. Web of Science Citations: 8.
CERVANTES, EVELYN PEREZ; COMIN, CESAR HENRIQUE; CESAR JUNIOR, ROBERTO MARCONDES; COSTA, LUCIANO DA FONTOURA. Morphological Neuron Classification Based on Dendritic Tree Hierarchy. NEUROINFORMATICS, v. 17, n. 1, p. 147-161, JAN 2019. Web of Science Citations: 1.
DE ARRUDA, HENRIQUE F.; COMIN, CESAR H.; COSTA, LUCIANO DA F. How integrated are theoretical and applied physics?. SCIENTOMETRICS, v. 116, n. 2, p. 1113-1121, AUG 2018. Web of Science Citations: 0.
DOMINGUES, G. S.; SILVA, F. N.; COMIN, C. H.; COSTA, L. DA F. Topological characterization of world cities. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, AUG 2018. Web of Science Citations: 2.
LIMA, THALES S.; DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F. The dynamics of knowledge acquisition via self-learning in complex networks. Chaos, v. 28, n. 8 AUG 2018. Web of Science Citations: 2.
COSTA, LUCIANO DA F.; SILVA, FILIPI N.; COMIN, CESAR H. A pattern recognition approach to transistor array parameter variance. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 499, p. 176-185, JUN 1 2018. Web of Science Citations: 0.
COSTA, LUCIANO DA F.; SILVA, FILIPI N.; COMIN, CESAR H. Negative feedback, linearity and parameter invariance in linear electronics. ELECTRICAL ENGINEERING, v. 100, n. 2, p. 1159-1181, JUN 2018. Web of Science Citations: 1.
COSTA, LUCIANO DA F.; SILVA, FILIPI NASCIMENTO; COMIN, CESAR H. Characterizing BJTs using the Early voltage in the forward active mode. INTERNATIONAL JOURNAL OF CIRCUIT THEORY AND APPLICATIONS, v. 46, n. 4, p. 978-986, APR 2018. Web of Science Citations: 0.
SOUZA, PAULO J. P.; COMIN, CESAR H.; COSTA, LUCIANO DA F. Topology and dynamics in complex networks: The role of edge reciprocity. EPL, v. 122, n. 2 APR 2018. Web of Science Citations: 1.
BURKE, PAULO E. P.; COMIN, CESAR H.; SILVA, FILIPI N.; COSTA, LUCIANO DA F. Biological network border detection. INTEGRATIVE BIOLOGY, v. 9, n. 12, p. 947-955, DEC 2017. Web of Science Citations: 1.
GOUVEIA, AYDEN; SEEGOBIN, MATTHEW; KANNANGARA, TIMAL S.; HE, LING; WONDISFORD, FREDRIC; COMIN, CESAR H.; COSTA, LUCIANO DA F.; BEIQUE, JEAN-CLAUDE; LAGACE, DIANE C.; LACOSTE, BAPTISTE; WANG, JING. The aPKC-CBP Pathway Regulates Post-stroke Neurovascular Remodeling and Functional Recovery. STEM CELL REPORTS, v. 9, n. 6, p. 1735-1744, DEC 2017. Web of Science Citations: 9.
VILLAR COUTO, CYNTHIA MARTINS; COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Effects of threshold on the topology of gene co-expression networks. MOLECULAR BIOSYSTEMS, v. 13, n. 10, p. 2024-2035, OCT 2017. Web of Science Citations: 2.
RODRIGUES, VALQUIRIA DA CRUZ; COMIN, CESAR H.; SOARES, JULIANA COATRINI; SOARES, ANDREY COATRINI; MELENDEZ, MATIAS ELISEO; FREGNANI, JOSE HUMBERTO T. G.; CARVALHO, ANDRE LOPES; COSTA, LUCIANO DA F.; OLIVEIRA, JR., OSVALDO N. Analysis of Scanning Electron Microscopy Images To Investigate Adsorption Processes Responsible for Detection of Cancer Biomarkers. ACS APPLIED MATERIALS & INTERFACES, v. 9, n. 7, p. 5885-5890, FEB 22 2017. Web of Science Citations: 4.
SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F. Seeking maximum linearity of transfer functions. Review of Scientific Instruments, v. 87, n. 12 DEC 2016. Web of Science Citations: 2.

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