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Detection of deleterious alleles through absence of homozygous haplotypes in dogs

Grant number: 17/08373-1
Support type:Scholarships in Brazil - Doctorate
Effective date (Start): July 01, 2017
Effective date (End): November 30, 2018
Field of knowledge:Agronomical Sciences - Veterinary Medicine
Cooperation agreement: Coordination of Improvement of Higher Education Personnel (CAPES)
Principal Investigator:José Fernando Garcia
Grantee:Rafaela Beatriz Pintor Torrecilha
Home Institution: Faculdade de Ciências Agrárias e Veterinárias (FCAV). Universidade Estadual Paulista (UNESP). Campus de Jaboticabal. Jaboticabal , SP, Brazil

Abstract

Deleterious variants (delVars) are alterations in the DNA sequence that can cause partial or total loss of gene function. The domestic dog (Canis lupus familiaris) has low genetic variability and high frequency of delVars. The accumulation of deleterious mutations makes the dog an excellent model for the study of human physiology and disease. Tools for genomic analyses, such as the SNP (single nucleotide polymorphism) chips, can help in the detection of genes and variants responsible for genetics diseases in several species. These chips allow for mapping deleterious variants through the search of highly frequent haplotypes that present deficit of homozygosity. The objective of this project is to search for haplotypes in linkage with delVars that could be responsible for embryonic, fetal or perinatal death. This information can be useful in breeding programs to reduce incidence of genetic diseases, as well as contribute to elucidate physiological mechanisms involved with the manifestation of delVars in dogs and other species. (AU)

Scientific publications
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
AGUIAR, TAMIRIS SAYURI; PINTOR TORRECILHA, RAFAELA BEATRIZ; MILANESI, MARCO; HARTH UTSUNOMIYA, ADAM TAITI; TRIGO, BEATRIZ BATISTA; TIJJANI, ABDULFATAI; MUSA, HASSAN HUSSEIN; LOPES, FLAVIA LOMBARDI; AJMONE-MARSAN, PAOLO; CARVALHEIRO, ROBERTO; DE REZENDE NEVES, HAROLDO HENRIQUE; DO CARMO, ADRIANA SANTANA; HANOTTE, OLIVIER; SONSTEGARD, TAD STEWART; GARCIA, JOSE FERNANDO; UTSUNOMIYA, YURI TANI. Association of Copy Number Variation at Intron 3 of HMGA2 With Navel Length in Bos indicus. FRONTIERS IN GENETICS, v. 9, DEC 7 2018. Web of Science Citations: 1.
Academic Publications
(References retrieved automatically from State of São Paulo Research Institutions)
TORRECILHA, Rafaela Beatriz Pintor. Varreduras genômicas para a detecção de variantes genéticas associadas à reprodução de cães. 2018. Doctoral Thesis - Universidade Estadual Paulista "Júlio de Mesquita Filho" Faculdade de Ciências Agrárias e Veterinárias..

Please report errors in scientific publications list by writing to: cdi@fapesp.br.