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Application of bioinformatic procedures for identification of the impact of the viral infections in hemotherapy

Grant number: 19/08528-0
Support type:Scholarships in Brazil - Master
Effective date (Start): June 01, 2019
Effective date (End): May 31, 2021
Field of knowledge:Biological Sciences - Genetics - Molecular Genetics and Genetics of Microorganisms
Principal Investigator:Svetoslav Nanev Slavov
Grantee:Rafael dos Santos Bezerra
Home Institution: Hemocentro de Ribeirão Preto. Hospital das Clínicas da Faculdade de Medicina de Ribeirão Preto da USP (HCMRP). Secretaria da Saúde (São Paulo - Estado). Ribeirão Preto , SP, Brazil
Associated research grant:17/23205-8 - Evaluation of the impact of emerging and reemerging viruses in the field of hemotherapy and stem cell transplantation by multiple-research approach, AP.JP

Abstract

Since the first use of the term metagenomics in the scientific community to identify environmental microbial communities by shotgun sequencing both the equipment and the applications of metagenomics have evolved dramatically. Over the time, the environmental metagenomics gave place for the use of clinical metagenomics, mainly for characterization of emerging viruses. In Brazil, the analysis of the virome in the field of hemotherapy is scarcely studied. Among the major challenges, appears the bioinformatic analysis due to operational and computational problems as well as the lack of trained human resources to work in the field. This proposal aims at the application of bioinformatics tools (bioinformatics pipelines) in two aspects. On the one hand, it will evaluate the presence of emerging viruses in blood units which are not transfused due to post-donation information hemoderivatives for treatment) and patients with hematopoietic transplantation (patients receiving blood products). In this scenario an important group is represented by the patients with hematopoietic transplantation who may present reactivation of viral infections due to their induced immunosuppression and by the same time can serve as hosts for emerging viruses. To better understand the impact of possible viral infections found in blood products and in patients with hematopoietic transplantation, this work aims at applying an elaborated bioinformatics pipeline for metagenomic data analysis from SNG. It will include steps and software that will extract a maximum quantity of information as possible from the viral infections in the samples. This work will be also supported by bioinformatic researchers from the Pasteur Institute, France and the National Institute of Blood Transfusion of France, France.

Scientific publications
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
BEZERRA, RAFAEL DOS SANTOS; VALENCA, IAN N.; RUY, PATRICIA DE CASSIA; XIMENEZ, JOAO P. B.; SILVA JUNIOR, WILSON A.; COVAS, DIMAS T.; KASHIMA, SIMONE; SLAVOV, SVETOSLAV N. The novel coronavirus SARS-CoV-2: From a zoonotic infection to coronavirus disease 2019. Journal of Medical Virology, JUN 2020. Web of Science Citations: 0.
BEZERRA, RAFAEL DOS SANTOS; DIEFENBACH, CRISTIANE FRACAO; PEREIRA, DALNEI VEIGA; KASHIMA, SIMONE; SLAVOV, SVETOSLAV NANEV. Viral metagenomics performed in patients with acute febrile syndrome during Toxoplasma gondii outbreak in south Brazil. Brazilian Journal of Infectious Diseases, v. 24, n. 3, p. 250-255, MAY-JUN 2020. Web of Science Citations: 0.
BEZERRA, RAFAEL DOS SANTOS; SANTOS, ELAINE VIEIRA; SILVEIRA, ROBERTA MARANINCHI; SILVA PINTO, ANA CRISTINA; COVAS, DIMAS TADEU; KASHIMA, SIMONE; SLAVOV, SVETOSLAV NANEV. Molecular prevalence and genotypes of human pegivirus-1 (HPgV-1) and SENV-like viruses among multiply transfused patients with beta-thalassemia. TRANSFUSION AND APHERESIS SCIENCE, v. 59, n. 2 APR 2020. Web of Science Citations: 0.

Please report errors in scientific publications list by writing to: cdi@fapesp.br.