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Vitor Barbanti Pereira Leite

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Universidade Estadual Paulista (UNESP). Campus de São José do Rio Preto. Instituto de Biociências, Letras e Ciências Exatas (IBILCE)  (Institutional affiliation for the last research proposal)
Birthplace: Brazil

Vitor Barbanti Pereira Leite in research grants and scholarships supported by FAPESP.

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Use this Research Supported by FAPESP (BV/FAPESP) channel only to send messages referring to FAPESP-funded scientific projects.


 

 

 

 

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Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (38)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

Publications37
Citations165
Cit./Article4.5
Data from Web of Science

OLIVEIRA JUNIOR, ANTONIO B.; CONTESSOTO, VINICIUS G.; MELLO, MATHEUS F.; ONUCHIC, JOSE N.. A Scalable Computational Approach for Simulating Complexes of Multiple Chromosomes. Journal of Molecular Biology, v. 433, n. 6, SI, . Web of Science Citations: 1. (17/09662-7, 16/13998-8, 16/01343-7)

YANG, HUAN; BANDARKAR, PRASAD; HORNE, RANSOM; LEITE, VITOR B. P.; CHAHINE, JORGE; WHITFORD, PAUL C.. Diffusion of tRNA inside the ribosome is position-dependent. Journal of Chemical Physics, v. 151, n. 8, . Web of Science Citations: 0. (16/19766-1, 14/50739-5, 18/18668-1)

HERNANDEZ GONZALEZ, JORGE ENRIQUE; ALVAREZ, LILIAN HERNANDEZ; PASCUTTI, PEDRO GERALDO; LEITE, VITOR B. P.. Prediction of Noncompetitive Inhibitor Binding Mode Reveals Promising Site for Allosteric Modulation of Falcipain-2. Journal of Physical Chemistry B, v. 123, n. 34, SI, p. 7327-7342, . Web of Science Citations: 0. (16/24587-9, 18/03911-8)

DE OLIVEIRA, VINICIUS M.; CAETANO, DANIEL L. Z.; DA SILVA, FERNANDO B.; MOURO, PAULO R.; DE OLIVEIRA, JR., ANTONIO B.; DE CARVALHO, SIDNEY J.; LEITE, VITOR B. P.. pH and Charged Mutations Modulate Cold Shock Protein Folding and Stability: A Constant pH Monte Carlo Study. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v. 16, n. 1, p. 765-772, . Web of Science Citations: 0. (16/19766-1, 18/18668-1, 18/11614-3, 18/01841-2)

CONTESSOTO, VINICIUS G.; DE OLIVEIRA, VINICIUS M.; FERNANDES, BRUNO R.; SLADE, GABRIEL G.; LEITE, VITOR B. P.. TKSA-MC: A web server for rational mutation through the optimization of protein charge interactions. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v. 86, n. 11, p. 1184-1188, . Web of Science Citations: 2. (16/19766-1, 14/06862-7, 16/13998-8, 17/09662-7)

LIMA, ANGELICA NAKAGAWA; DE OLIVEIRA, RONALDO JUNIO; KIMUS BRAZ, ANTONIO SERGIO; DE SOUZA COSTA, MAURICIO GARCIA; PERAHIA, DAVID; BARBOUR SCOTT, LUIS PAULO. Effects of pH and aggregation in the human prion conversion into scrapie form: a study using molecular dynamics with excited normal modes. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, v. 47, n. 5, p. 583-590, . Web of Science Citations: 1. (11/17658-3)

VINÍCIUS DE GODOI CONTESSOTO; ANTONIO BENTO DE OLIVEIRA JUNIOR; JORGE CHAHINE; RONALDO JUNIO DE OLIVEIRA; VITOR BARBANTI PEREIRA LEITE. Introdução ao problema de enovelamento de proteínas: uma abordagem utilizando modelos computacionais simplificados. Revista Brasileira de Ensino de Física, v. 40, n. 4, p. -, . (16/19766-1, 17/09662-7, 16/13998-8, 14/06862-7)

HOFFMAM, ZAIRA B.; OLIVEIRA, LEANDRO C.; COTA, JUNIO; ALVAREZ, THABATA M.; DIOGO, JOS A.; NETO, MARIO DE OLIVEIRA; CITADINI, ANA PAULA S.; LEITE, VITOR B. P.; SQUINA, FABIO M.; MURAKAMI, MARIO T.; et al. Characterization of a Hexameric Exo-Acting GH51 alpha-l-Arabinofuranosidase from the Mesophilic Bacillus subtilis. MOLECULAR BIOTECHNOLOGY, v. 55, n. 3, p. 260-267, . Web of Science Citations: 6. (08/58037-9, 11/14200-6, 11/17658-3, 10/51890-8, 11/13242-7)

COTA, JUNIO; OLIVEIRA, LEANDRO C.; DAMASIO, ANDRE R. L.; CITADINI, ANA P.; HOFFMAM, ZAIRA B.; ALVAREZ, THABATA M.; CODIMA, CARLA A.; LEITE, VITOR B. P.; PASTORE, GLAUCIA; DE OLIVEIRA-NETO, MARIO; et al. Assembling a xylanase-lichenase chimera through all-atom molecular dynamics simulations. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, v. 1834, n. 8, p. 1492-1500, . Web of Science Citations: 15. (08/58037-9, 11/02169-7, 11/13242-7)

ALVAREZ, LILIAN HERNANDEZ; BARRETO GOMES, DIEGO ENRY; HERNANDEZ GONZALEZ, JORGE ENRIQUE; PASCUTTI, PEDRO GERALDO. Dissecting a novel allosteric mechanism of cruzain: A computer-aided approach. PLoS One, v. 14, n. 1, . Web of Science Citations: 3. (16/24587-9, 18/03911-8)

OLIVEIRA, JR., ANTONIO B.; YANG, HUAN; WHITFORD, PAUL C.; LEITE, VITOR B. P.. Distinguishing Biomolecular Pathways and Metastable States. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, v. 15, n. 11, p. 6482-6490, . Web of Science Citations: 1. (16/19766-1, 18/18668-1, 14/50739-5)

DAMASIO, ANDRE R. L.; RUBIO, MARCELO V.; OLIVEIRA, LEANDRO C.; SEGATO, FERNANDO; DIAS, BRUNO A.; CITADINI, ANA P.; PAIXAO, DOUGLAS A.; SQUINA, FABIO M.. Understanding the Function of Conserved Variations in the Catalytic Loops of Fungal Glycoside Hydrolase Family 12. Biotechnology and Bioengineering, v. 111, n. 8, p. 1494-1505, . Web of Science Citations: 12. (08/58037-9, 12/12859-3, 11/13242-7)

GONZALEZ, JORGE ENRIQUE HERNANDEZ; ALVAREZ, LILIAN HERNANDEZ; LEITE, VITOR B. P.; PASCUTTI, PEDRO GERALDO. Water Bridges Play a Key Role in Affinity and Selectivity for Malarial Protease Falcipain-2. JOURNAL OF CHEMICAL INFORMATION AND MODELING, v. 60, n. 11, p. 5499-5512, . Web of Science Citations: 1. (16/24587-9, 18/25311-2, 18/03911-8)

DE OLIVEIRA, VINICIUS MARTINS; CONTESSOTO, VINICIUS DE GODOI; DA SILVA, FERNANDO BRUNO; ZAGO CAETANO, DANIEL LUCAS; DE CARVALHO, SIDNEY JURADO; PEREIRA LEITE, VITOR BARBANTI. Effects of pH and Salt Concentration on Stability of a Protein G Variant Using Coarse-Grained Models. BIOPHYSICAL JOURNAL, v. 114, n. 1, p. 65-75, . Web of Science Citations: 8. (16/19766-1, 17/09662-7, 13/13151-7, 14/06862-7, 16/13998-8)

CONTESSOTO, VINICIUS G.; CHENG, RYAN R.; HAJITAHERI, ARYA; DODERO-ROJAS, ESTEBAN; MELLO, MATHEUS F.; LIEBERMAN-AIDEN, EREZ; WOLYNES, PETER G.; DI PIERRO, MICHELE; ONUCHIC, JOSE N.. The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome. Nucleic Acids Research, v. 49, n. D1, p. D172-D182, . Web of Science Citations: 2. (17/09662-7)

RODRIGUES, CAIO H. P.; LEITE, VITOR B. P.; BRUNI, ALINE T.. Can NMR spectroscopy discriminate between NPS amphetamines and cathinones? An evaluation by in silico studies and chemometrics. CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, v. 210, . Web of Science Citations: 0. (19/22540-3, 16/19766-1)

FRANCO CAIRO, JOAO PAULO L.; OLIVEIRA, LEANDRO C.; UCHIMA, CRISTIANE A.; ALVAREZ, THABATA M.; CITADINI, ANA PAULA DA S.; COTA, JUNIO; LEONARDO, FLAVIA COSTA; COSTA-LEONARDO, ANA M.; CARAZZOLLE, MARCELO F.; COSTA, FERNANDO F.; et al. Deciphering the synergism of endogenous glycoside hydrolase families 1 and 9 from Coptotermes gestroi. Insect Biochemistry and Molecular Biology, v. 43, n. 10, p. 970-981, . Web of Science Citations: 16. (08/58037-9, 11/20977-3, 12/19040-0, 10/11469-1, 11/08609-9, 11/13242-7)

HERNANDEZ-GONZALEZ, JORGE E.; SALAS-SARDUY, EMIR; HERNANDEZ RAMIREZ, LUISA F.; PASCUAL, MARIA J.; ALVAREZ, DIEGO E.; PABON, ADRIANA; LEITE, VITOR B. P.; PASCUTTI, PEDRO G.; VALIENTE, PEDRO A.. Identification of (4-(9H-fluoren-9-yl) piperazin-1-yl) methanone derivatives as falcipain 2 inhibitors active against Plasmodium falciparum cultures. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, v. 1862, n. 12, p. 2911-2923, . Web of Science Citations: 1. (16/24587-9)

CORONADO, MONIKA A.; CARUSO, ICARO P.; DE OLIVEIRA, VINICIUS M.; CONTESSOTO, VINICIUS G.; LEITE, VITOR B. P.; KAWAI, LIEGE A.; ARNI, RAGHUVIR K.; EBERLE, RAPHAEL J.. Cold Shock Protein A from Corynebacterium pseudotuberculosis: Role of Electrostatic Forces in the Stability of the Secondary Structure. PROTEIN AND PEPTIDE LETTERS, v. 24, n. 4, p. 358-367, . Web of Science Citations: 6. (14/06862-7, 16/08104-8)

ARAUJO, GABRIELA C.; SILVA, RICARDO H. T.; SCOTT, LUIS P. B.; ARAUJO, ALEXANDRE S.; SOUZA, FATIMA P.; DE OLIVEIRA, RONALDO JUNIO. Structure and functional dynamics characterization of the ion channel of the human respiratory syncytial virus (hRSV) small hydrophobic protein (SH) transmembrane domain by combining molecular dynamics with excited normal modes. Journal of Molecular Modeling, v. 22, n. 12, . Web of Science Citations: 7. (10/18169-3, 11/17658-3)

DE SOUZA, ANGELICA R.; DE ARAUJO, GABRIELA C.; ZANPHORLIN, LETICIA M.; RULLER, ROBERTO; FRANCO, FERNANDA C.; TORRES, FERNANDO A. G.; MERTENS, JEFFREY A.; BOWMAN, MICHAEL J.; GOMES, ELENI; DA SILVA, ROBERTO. Engineering increased thermostability in the GH-10 endo-1,4-beta-xylanase from Thermoascus aurantiacus CBMAI 756. International Journal of Biological Macromolecules, v. 93, n. A, p. 20-26, . Web of Science Citations: 8. (10/12624-0, 11/17658-3, 14/02080-4, 14/04272-8)

MOURO, PAULO RICARDO; CONTESSOTO, VINICIUS DE GODOI; CHAHINE, JORGE; DE OLIVEIRA, RONALDO JUNIO; PEREIRA LEITE, VITOR BARBANTI. Quantifying Nonnative Interactions in the Protein-Folding Free-Energy Landscape. BIOPHYSICAL JOURNAL, v. 111, n. 2, p. 287-293, . Web of Science Citations: 5. (14/06862-7)

HERNANDEZ GONZALEZ, JORGE ENRIQUE; ALVAREZ, LILIAN HERNANDEZ; PASCUTTI, PEDRO GERALDO; VALIENTE, PEDRO A.. Predicting binding modes of reversible peptide-based inhibitors of falcipain-2 consistent with structure-activity relationships. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v. 85, n. 9, p. 1666-1683, . Web of Science Citations: 4. (16/24587-9)

DA SILVA, FERNANDO B.; DE OLIVEIRA, VINICIUS M.; SANCHES, MURILO N.; CONTESSOTO, VINICIUS G.; LEITE, VITOR B. P.. Rational Design of Chymotrypsin Inhibitor 2 by Optimizing Non-Native Interactions. JOURNAL OF CHEMICAL INFORMATION AND MODELING, v. 60, n. 2, p. 982-988, . Web of Science Citations: 1. (16/19766-1, 18/11614-3, 17/09662-7, 18/18668-1, 16/13998-8, 17/25130-5)

BRUNI, ALINE THAIS; MARIZ DE CARVALHO, PEDRO OLIVEIRA; PINKE RODRIGUES, CAIO HENRIQUE; PEREIRA LEITE, VITOR BARBANTI. In silico methods in forensic science: Quantum chemistry and multivariate analysis applied to infrared spectra of new amphetamine- and cathinone-derived psychoactive substances. FORENSIC CHEMISTRY, v. 9, p. 21-34, . Web of Science Citations: 2. (16/19766-1)

DA SILVA, FERNANDO BRUNO; CONTESSOTO, VINICIUS G.; DE OLIVEIRA, VINICIUS M.; CLARKE, JANE; LEITE, VITOR B. P.. Non-Native Cooperative Interactions Modulate Protein Folding Rates. Journal of Physical Chemistry B, v. 122, n. 48, p. 10817-10824, . Web of Science Citations: 3. (16/19766-1, 18/11614-3, 17/09662-7, 14/06862-7, 16/13998-8)

FREITAS, FREDERICO CAMPOS; LIMA, ANGELICA NAKAGAWA; CONTESSOTO, VINICIUS DE GODOI; WHITFORD, PAUL C.; DE OLIVEIRA, RONALDO JUNIO. Drift-diffusion (DrDiff) framework determines kinetics and thermodynamics of two-state folding trajectory and tunes diffusion models. Journal of Chemical Physics, v. 151, n. 11, . Web of Science Citations: 0. (17/09662-7, 16/13998-8)

POLOTTO, FRANCIELE; DRIGO FILHO, ELSO; CHAHINE, JORGE; DE OLIVEIRA, RONALDO JUNIO. Supersymmetric quantum mechanics method for the Fokker-Planck equation with applications to protein folding dynamics. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 493, p. 286-300, . Web of Science Citations: 4. (11/17658-3)

TAMBONIS, TIAGO; BOARETO, MARCELO; LEITE, VITOR B. P.. Differential Expression Analysis in RNA-seq Data Using a Geometric Approach. JOURNAL OF COMPUTATIONAL BIOLOGY, v. 25, n. 11, p. 1257-1265, . Web of Science Citations: 0. (16/19766-1, 14/06862-7)

COLUSSI, FRANCIELI; DA SILVA, VIVIAM M.; MILLER, IAN; COTA, JUNIO; DE OLIVEIRA, LEANDRO C.; DE OLIVEIRA NETO, MARIO; SQUINA, FABIO M.; GARCIA, WANIUS. Oligomeric state and structural stability of two hyperthermophilic beta-glucosidases from Thermotoga petrophila. Amino Acids, v. 47, n. 5, p. 937-948, . Web of Science Citations: 8. (08/58037-9, 12/21054-9, 12/03503-0, 11/13242-7)

DE OLIVEIRA, LEANDRO C.; DA SILVA, VIVIAM M.; COLUSSI, FRANCIELI; CABRAL, ALINE D.; DE OLIVEIRA NETO, MARIO; SQUINA, FABIO M.; GARCIA, WANIUS. Conformational Changes in a Hyperthermostable Glycoside Hydrolase: Enzymatic Activity Is a Consequence of the Loop Dynamics and Protonation Balance. PLoS One, v. 10, n. 2, . Web of Science Citations: 16. (08/58037-9, 12/21054-9, 12/03503-0, 11/13242-7)

MANDELLI, F.; FRANCO CAIRO, J. P. L.; CITADINI, A. P. S.; BUECHLI, F.; ALVAREZ, T. M.; OLIVEIRA, R. J.; LEITE, V. B. P.; PAES LEME, A. F.; MERCADANTE, A. Z.; SQUINA, F. M.. The characterization of a thermostable and cambialistic superoxide dismutase from Thermus filiformis. Letters in Applied Microbiology, v. 57, n. 1, p. 40-46, . Web of Science Citations: 10. (08/58037-9, 11/17658-3)

COTA, JUNIO; CORREA, THAMY L. R.; DAMASIO, ANDRE R. L.; DIOGO, JOSE A.; HOFFMAM, ZAIRA B.; GARCIA, WANIUS; OLIVEIRA, LEANDRO C.; PRADE, ROLF A.; SQUINA, FABIO M.. Comparative analysis of three hyperthermophilic GH1 and GH3 family members with industrial potential. NEW BIOTECHNOLOGY, v. 32, n. 1, p. 13-20, . Web of Science Citations: 22. (08/58037-9, 10/18198-3, 12/21054-9, 11/13242-7)

MARIUTTI, RICARDO B.; HERNANDEZ-GONZALEZ, JORGE E.; NASCIMENTO, ANDREY F. Z.; DE MORAIS, MARIANA A. B.; MURAKAMI, MARIO T.; CARARETO, CLAUDIA M. A.; ARNI, RAGHUVIR K.. A single P115Q mutation modulates specificity in the Corynebacterium pseudotuberculosis arginine repressor. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, v. 1864, n. 7, . Web of Science Citations: 0. (18/07977-3, 15/13765-0, 16/19995-0, 15/18868-2, 18/10736-8, 16/24587-9)

DODERO-ROJAS, ESTEBAN; FERREIRA, LUIZA G.; LEITE, VITOR B. P.; ONUCHIC, JOSE N.; CONTESSOTO, VINICIUS G.. Modeling Chikungunya control strategies and Mayaro potential outbreak in the city of Rio de Janeiro. PLoS One, v. 15, n. 1, . Web of Science Citations: 0. (17/09662-7, 18/18668-1, 16/13998-8)

MOURO, PAULO R.; POVINELLI, ANA P. R.; LEITE, VITOR B. P.; CHAHINE, JORGE. Exploring Folding Aspects of Monomeric Superoxide Dismutase. Journal of Physical Chemistry B, v. 124, n. 4, p. 650-661, . Web of Science Citations: 0. (16/19766-1, 18/18668-1)

RODRIGUES, CAIO H. P.; HERNANDEZ-GONZALEZ, JORGE E.; PEDRINA, NATALIA J.; LEITE, VITOR B. P.; BRUNI, ALINE T.. In silico Evaluation of Cucurbit[6]uril as a Potential Detector for Cocaine and Its Adulterants Lidocaine, Caffeine, and Procaine. Journal of the Brazilian Chemical Society, v. 32, n. 4, p. 800-810, . Web of Science Citations: 0. (16/19766-1, 16/24587-9)

CHENG, RYAN R.; CONTESSOTO, VINICIUS G.; AIDEN, EREZ LIEBERMAN; WOLYNES, PETER G.; DI PIERRO, MICHELE; ONUCHIC, JOSE N.. Exploring chromosomal structural heterogeneity across multiple cell lines. eLIFE, v. 9, . Web of Science Citations: 0. (17/09662-7, 16/13998-8)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

OLIVEIRA, Ronaldo Júnio de. Estudo do coeficiente de difusão no enovelamento de proteína.  115 f. Tese (Doutorado) -  Universidade Estadual Paulista "Júlio de Mesquita Filho" Instituto de Biociências, Letras e Ciências Exatas (Campus de São José do Rio Preto).  São José do Rio Preto.  (07/04647-8

LIMA, Débora Tavares de. Regimes de frustração ótima em enovelamento de proteínas com modelos baseado em estrutura.  36 f. Dissertação (Mestrado) -  Instituto de Biociências, Letras e Ciências Exatas.  Universidade Estadual Paulista.  São José do Rio Preto.  (10/04905-0

GONZÁLEZ, Jorge Enrique Hernández. Computational strategies for selective inhibition of falcipain-2. Tese (Doutorado) -  Universidade Estadual Paulista "Júlio de Mesquita Filho" Instituto de Biociências, Letras e Ciências Exatas.  (16/24587-9

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