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Igor Polikarpov

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Universidade de São Paulo (USP). Instituto de Física de São Carlos (IFSC)  (Institutional affiliation for the last research proposal)
Birthplace: Rússia

Igor Polikarpov is a Full Professor of the Institute of Physics in Sao Carlos (IFSC), The University of São Paulo (USP) and coordinator of the Ceter for Renewable Energies and Environment (poloTErRA/USP-São Carlos). His main scientific interests are centered at Structural Biology and Molecular Biophysics and their applications in Bioenergy and Biotechnology. Igor Polikarpov graduated in Physics from the Byelorussian State University (1983), did his PhD at the same University (1989), and post-docs at the Latvian Academy of Science (1991), Max-Planck Gesselschaft (1993) and the University of Edinburgh (1995). Published over 280 scientific papers, which were cited more than 5.800 times, resulting in h-factor of 39 (ISI). Igor Polikarpov coordinated joint scientific projects between Brazil and European Union (FP7) and Brazil and UK (FAPESP-RCUK) and is coordinating collaborative projects with India and Argentina. He also developed scientific collaborations with biotechnological and pharmaceutical companies and was responsible for construction, installation and operation of large-scale scientific installations (protein crystallography beamlines MX-1 & MX-2 at the Brazilian National Synchrotron Laboratory/LNLS, Campinas, Brazil). He is an Honorary Professor of the University of Bath and an Honorary Visiting Professor at the Department of Biology of the University of York. Prof. Polikarpov is a member of the Editorial Board of Biotechnology Letters (Springer) and Enzyme Engineering (OMICS International). Igor Polikarpov is one of the proponents of the Integrated PhD Program in Bioenergy (joint graduate course of three São Paulo State Universities: USP, UNESP and UNICAMP). Igor Polikarpov is a Commander of the Brazilian National Order of Scientific Merit and a Member of São Paulo State Academy of Sciences. (Source: Lattes Curriculum)

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Scholarships abroad
FAPESP support in numbers * Updated August 24, 2019
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Keywords used by the researcher
Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (119)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

Publications105
Citations1,308
Cit./Article12.5
Data from Web of Science

MAZIERO, PRISCILA; DE OLIVEIRA NETO, MARIO; MACHADO, DOUGLAS; BATISTA, TATIANA; SCHMITT CAVALHEIRO, CARLA CRISTINA; NEUMANN, MIGUEL G.; CRAIEVICH, ALDO FELIX; DE MORAES ROCHA, GEORGE JACKSON; POLIKARPOV, IGOR; GONCALVES, ADILSON ROBERTO. Structural features of lignin obtained at different alkaline oxidation conditions from sugarcane bagasse. INDUSTRIAL CROPS AND PRODUCTS, v. 35, n. 1, p. 61-69, . Web of Science Citations: 34. (09/00874-5, 10/16542-9)

FIGUEIRA, A. C. M.; SAIDEMBERG, D. M.; SOUZA, P. C. T.; MARTINEZ, L.; SCANLAN, T. S.; BAXTER, J. D.; SKAF, M. S.; PALMA, M. S.; WEBB, P.; POLIKARPOV, I.. Analysis of Agonist and Antagonist Effects on Thyroid Hormone Receptor Conformation by Hydrogen/Deuterium Exchange. MOLECULAR ENDOCRINOLOGY, v. 25, n. 1, p. 15-31, . Web of Science Citations: 31. (08/00078-1, 06/00182-8)

DE ARAUJO, ALEXANDRE SUMAN; MARTINEZ, LEANDRO; NICOLUCI, RICARDO DE PAULA; SKAF, MUNIR S.; POLIKARPOV, IGOR. Structural modeling of high-affinity thyroid receptor-ligand complexes. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, v. 39, n. 11, p. 1523-1536, . Web of Science Citations: 12. (06/00182-8, 06/01977-4)

COLUSSI, FRANCIELI; TEXTOR, LARISSA C.; SERPA, VIVIANE; MAEDA, ROBERTO NOBUYUKI; PEREIRA, JR., NEI; POLIKARPOV, IGOR. Purification, crystallization and preliminary crystallographic analysis of the catalytic domain of the extracellular cellulase CBHI from Trichoderma harzianum. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 66, n. 9, p. 1041-1044, . Web of Science Citations: 7. (09/05349-6, 07/08706-9)

KADOWAKI, MARCO A. S.; HIGASI, PAULA; DE GODOY, MARIANA O.; PRADE, ROLF A.; POLIKARPOV, IGOR. Biochemical and structural insights into a thermostable cellobiohydrolase from Myceliophthora thermophila. FEBS Journal, v. 285, n. 3, p. 559-579, . Web of Science Citations: 1. (15/13684-0, 11/20505-4, 09/52840-7)

GODOY, ANDRE S.; PEREIRA, CAROLINE S.; RAMIA, MARINA PAGLIONE; SILVEIRA, RODRIGO L.; CAMILO, CESAR M.; KADOWAKI, MARCO A.; LANGE, LENE; BUSK, PETER K.; NASCIMENTO, ALESSANDRO S.; SKAF, MUNIR S.; et al. Structure, computational and biochemical analysis of PcCel45A endoglucanase from Phanerochaete chrysosporium and catalytic mechanisms of GH45 subfamily C members. SCIENTIFIC REPORTS, v. 8, . Web of Science Citations: 2. (15/13684-0, 11/21608-1, 10/52362-5, 11/20505-4)

TAVARES, E. Q. P.; GRANDIS, A.; LEMBKE, C. G.; SOUZA, G. M.; PURGATTO, E.; DE SOUZA, A. P.; BUCKERIDGE, M. S.. Roles of auxin and ethylene in aerenchyma formation in sugarcane roots. PLANT SIGNALING & BEHAVIOR, v. 13, n. 3, . Web of Science Citations: 3. (08/57908-6, 13/16225-1, 09/52840-7, 11/07586-5, 10/17104-5)

LIBERATO, MARCELO VIZONA; NASCIMENTO, ALESSANDRO S.; AYERS, STEVEN D.; LIN, JEAN Z.; CVORO, ALEKSANDRA; SILVEIRA, RODRIGO L.; MARTINEZ, LEANDRO; SOUZA, PAULO C. T.; SAIDEMBERG, DANIEL; DENG, TUO; et al. Medium Chain Fatty Acids Are Selective Peroxisome Proliferator Activated Receptor (PPAR) gamma Activators and Pan-PPAR Partial Agonists. PLoS One, v. 7, n. 5, . Web of Science Citations: 71. (06/00182-8)

BROGNARO, HEVILA; ALMEIDA, VITOR MEDEIROS; DE ARAUJO, EVANDRO ARES; PIYADOV, VASILY; MORIM SANTOS, MARIA AUXILIADORA; MARANA, SANDRO ROBERTO; POLIKARPOV, IGOR. Biochemical Characterization and Low-Resolution SAXS Molecular Envelope of GH1 beta-Glycosidase from Saccharophagus degradans. MOLECULAR BIOTECHNOLOGY, v. 58, n. 12, p. 777-788, . Web of Science Citations: 1. (08/56255-9)

CASTILLO PEDRAZA, MIDIAN C.; NOVAIS, TATIANA F.; FAUSTOFERRI, ROBERTA C.; QUIVEY, JR., ROBERT G.; TEREKHOV, ANTON; HAMAKER, BRUCE R.; KLEIN, MARLISE I.. Extracellular DNA and lipoteichoic acids interact with exopolysaccharides in the extracellular matrix of Streptococcus mutans biofilms. BIOFOULING, v. 33, n. 9, p. 722-740, . Web of Science Citations: 11. (14/21355-4, 09/54035-4, 14/05423-0)

MELLO, BRUNO L.; ALESSI, ANNA M.; RIANO-PACHON, DIEGO M.; DEAZEVEDO, EDUARDO R.; GUIMARAES, FRANCISCO E. G.; ESPIRITO SANTO, MELISSA C.; MCQUEEN-MASON, SIMON; BRUCE, NEIL C.; POLIKARPOV, IGOR. Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1,4-beta-xylanase activity. BIOTECHNOLOGY FOR BIOFUELS, v. 10, . Web of Science Citations: 6. (15/13684-0, 10/52362-5, 11/21608-1)

ROMANO, RENAN A.; PRATAVIEIRA, SEBASTIAO; DA SILVA, ANA P.; KURACHI, CRISTINA; GUIMARAES, FRANCISCO E. G.. Light-driven photosensitizer uptake increases Candida albicans photodynamic inactivation. Journal of Biophotonics, v. 10, n. 11, SI, p. 1538-1546, . Web of Science Citations: 5. (09/54035-4, 13/07276-1)

SADRAEIAN, MOHAMMAD; GUIMARAES, FRANCISCO E. G.; ARAUJO, ANA P. U.; WORTHYLAKE, DAVID K.; LECOUR, LOUIS JR.; PINCUS, SETH H.. Selective cytotoxicity of a novel immunotoxin based on pulchellin A chain for cells expressing HIV envelope. SCIENTIFIC REPORTS, v. 7, . Web of Science Citations: 0. (09/54035-4, 13/07276-1)

PEREIRA MACHADO, AGNES THIANE; BARRETO FONSECA, EMANUELLA MARIA; DOS REIS, MARCELO AUGUSTO; SARAIVA, ANTONIO MARCOS; DOS SANTOS, CLELTON APARECIDO; SZYMANSKI DE TOLEDO, MARCELO AUGUSTO; POLIKARPOV, IGOR; DE SOUZA, ANETE PEREIRA; APARICIO, RICARDO; IULEK, JORGE. Conformational variability of the stationary phase survival protein E from Xylella fastidiosa revealed by X-ray crystallography, small-angle X ray scattering studies, and normal mode analysis. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v. 85, n. 10, p. 1931-1943, . Web of Science Citations: 0. (12/51580-4, 11/15792-4)

JOHNS, M. A.; BERNARDES, A.; RIBEIRO DE AZEVEDO, E.; GUIMARAES, F. E. G.; LOWE, J. P.; GALE, E. M.; POLIKARPOV, I.; SCOTT, J. L.; SHARMA, R. I.. On the subtle tuneability of cellulose hydrogels: implications for binding of biomolecules demonstrated for CBM 1. JOURNAL OF MATERIALS CHEMISTRY B, v. 5, n. 21, p. 3879-3887, . Web of Science Citations: 8. (09/52840-7)

DECARLI, M. C.; CORREA, T. Q.; VOLLET-FILHO, J. D.; BAGNATO, V. S.; SOUZA, C. W. O.. The influence of experimental conditions on the final result of photoinhibition of Staphylococcus aureus. Photodiagnosis and Photodynamic Therapy, v. 19, p. 229-234, . Web of Science Citations: 1. (09/54035-4, 13/07276-1)

SEGATO, FERNANDO; DIAS, BRUNO; BERTO, GABRIELA L.; DE OLIVEIRA, DYONI M.; DE SOUZA, FLAVIO H. M.; CITADINI, ANA PAULA; MURAKAMI, MARIO T.; DAMASIO, ANDRE R. L.; SQUINA, FABIO MARCIO; POLIKARPOV, IGOR. Cloning, heterologous expression and biochemical characterization of a non-specific endoglucanase family 12 from Aspergillus terreus NIH2624. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, v. 1865, n. 4, p. 395-403, . Web of Science Citations: 10. (13/21545-5, 14/18714-2, 09/52840-7)

ZHU, ZONGYUAN; REZENDE, CAMILA ALVES; SIMISTER, RACHAEL; MCQUEEN-MASON, SIMON J.; MACQUARRIE, DUNCAN J.; POLIKARPOV, IGOR; GOMEZ, LEONARDO D.. Efficient sugar production from sugarcane bagasse by microwave assisted acid and alkali pretreatment. BIOMASS & BIOENERGY, v. 93, p. 269-278, . Web of Science Citations: 30. (10/11135-6, 12/22119-7)

MELLO, BRUNO L.; ALESSI, ANNA M.; MCQUEEN-MASON, SIMON; BRUCE, NEIL C.; POLIKARPOV, IGOR. Nutrient availability shapes the microbial community structure in sugarcane bagasse compost-derived consortia. SCIENTIFIC REPORTS, v. 6, . Web of Science Citations: 11. (10/52362-5, 11/21608-1)

GODOY, ANDRE SCHUTZER; CAMILO, CESAR MOISES; KADOWAKI, MARCO ANTONIO; MUNIZ, HELOISA DOS S.; SANTO, MELISSA ESPIRITO; MURAKAMI, MARIO TYAGO; NASCIMENTO, ALESSANDRO S.; POLIKARPOV, IGOR. Crystal structure of beta 1 -> 6-galactosidase from Bifidobacterium bifidum S17: trimeric architecture, molecular determinants of the enzymatic activity and its inhibition by alpha-galactose. FEBS Journal, v. 283, n. 22, p. 4097-4112, . Web of Science Citations: 5. (11/20505-4, 09/05328-9, 08/56255-9, 14/06565-2, 09/52840-7, 11/05712-3)

DOS SANTOS, JADEMILSON CELESTINO; BERNARDES, AMANDA; GIAMPIETRO, LETIZIA; AMMAZZALORSO, ALESSANDRA; DE FILIPPIS, BARBARA; AMOROSO, ROSA; POLIKARPOV, IGOR. Different binding and recognition modes of GL479, a dual agonist of Peroxisome Proliferator-Activated Receptor alpha/gamma. Journal of Structural Biology, v. 191, n. 3, p. 332-340, . Web of Science Citations: 16. (08/56255-9, 09/14333-6)

DE SOUZA, AMANDA P.; LEITE, DEBORA C. C.; PATTATHIL, SIVAKUMAR; HAHN, MICHAEL G.; BUCKERIDGE, MARCOS S.. Composition and Structure of Sugarcane Cell Wall Polysaccharides: Implications for Second-Generation Bioethanol Production. BioEnergy Research, v. 6, n. 2, p. 564-579, . Web of Science Citations: 12. (09/52840-7, 08/57908-6)

PRATES, ERICA T.; STANKOVIC, IVANA; SILVEIRA, RODRIGO L.; LIBERATO, MARCELO V.; HENRIQUE-SILVA, FLAVIO; PEREIRA, JR., NEI; POLIKARPOV, IGOR; SKAF, MUNIR S.. X-ray Structure and Molecular Dynamics Simulations of Endoglucanase 3 from Trichoderma harzianum: Structural Organization and Substrate Recognition by Endoglucanases That Lack Cellulose Binding Module. PLoS One, v. 8, n. 3, . Web of Science Citations: 18. (08/56255-9, 10/08680-2, 09/54035-4)

ROSSETO, FLAVIO R.; PUHL, ANA C.; ANDRADE, MAXUEL O.; POLIKARPOV, IGOR. Crystallization and preliminary diffraction analysis of the catalytic domain of major extracellular endoglucanase from Xanthomonas campestris pv. campestris. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 69, n. 2, p. 137-140, . Web of Science Citations: 1. (09/05349-6, 07/08706-9, 08/56255-9, 10/52362-5)

DE ARAUJO, EVANDRO ARES; TOMAZINI, JR., ATILIO; SEIKI KADOWAKI, MARCO ANTONIO; MURAKAMI, MARIO TYAGO; POLIKARPOV, IGOR. Crystallization and preliminary X-ray diffraction analysis of a new xyloglucanase from Xanthomonas campestris pv. campestris. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 69, n. 6, p. 676-678, . Web of Science Citations: 0. (10/52362-5, 07/08706-9, 08/56255-9, 09/05349-6)

LIMA, MARISA A.; LAVORENTE, GABRIELA B.; DA SILVA, HANA K. P.; BRAGATTO, JULIANO; REZENDE, CAMILA A.; BERNARDINELLI, OIGRES D.; DEAZEVEDO, EDUARDO R.; GOMEZ, LEONARDO D.; MCQUEEN-MASON, SIMON J.; LABATE, CARLOS A.; et al. Effects of pretreatment on morphology, chemical composition and enzymatic digestibility of eucalyptus bark: a potentially valuable source of fermentable sugars for biofuel production - part 1. BIOTECHNOLOGY FOR BIOFUELS, v. 6, . Web of Science Citations: 58. (09/18354-8, 10/52362-5, 08/56255-9, 10/08370-3, 10/11135-6)

LIMA, MARISA A.; OLIVEIRA-NETO, MARIO; KADOWAKI, MARCO ANTONIO S.; ROSSETO, FLAVIO R.; PRATES, ERICA T.; SQUINA, FABIO M.; LEME, ADRIANA F. P.; SKAF, MUNIR S.; POLIKARPOV, IGOR. Aspergillus niger beta-Glucosidase Has a Cellulase-like Tadpole Molecular Shape INSIGHTS INTO GLYCOSIDE HYDROLASE FAMILY 3 (GH3) beta-GLUCOSIDASE STRUCTURE AND FUNCTION. Journal of Biological Chemistry, v. 288, n. 46, p. 32991-33005, . Web of Science Citations: 27. (08/56255-9, 09/54035-4, 10/16542-9)

DA SILVA, FLAVIA M. C.; DOS SANTOS, JADEMILSON C.; CAMPOS, JESSICA L. O.; MAFUD, ANA CAROLINA; POLIKARPOV, IGOR; FIGUEIRA, ANA CAROLINA M.; NASCIMENTO, ALESSANDRO S.. Structure-based identification of novel PPAR gamma ligands. Bioorganic & Medicinal Chemistry Letters, v. 23, n. 21, p. 5795-5802, . Web of Science Citations: 15. (10/15376-8)

LIMA, MARISA A.; GOMEZ, LEONARDO D.; STEELE-KING, CLARE G.; SIMISTER, RACHAEL; BERNARDINELLI, OIGRES D.; CARVALHO, MARCELO A.; REZENDE, CAMILA A.; LABATE, CARLOS A.; DEAZEVEDO, EDUARDO R.; MCQUEEN-MASON, SIMON J.; et al. Evaluating the composition and processing potential of novel sources of Brazilian biomass for sustainable biorenewables production. BIOTECHNOLOGY FOR BIOFUELS, v. 7, . Web of Science Citations: 30. (09/18354-8, 10/52362-5, 08/56255-9, 10/08370-3, 10/11135-6)

COLUSSI, FRANCIELI; GARCIA, WANIUS; ROSSETO, FLAVIO RODOLFO; SOARES DE MELLO, BRUNO LUAN; DE OLIVEIRA NETO, MARIO; POLIKARPOV, IGOR. Effect of pH and temperature on the global compactness, structure, and activity of cellobiohydrolase Cel7A from Trichoderma harzianum. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, v. 41, n. 1, p. 89-98, . Web of Science Citations: 13. (10/08370-3, 09/54035-4, 10/16542-9)

TEXTOR, LARISSA C.; SANTOS, JADEMILSON C.; HIDALGO CUADRADO, NAZARET; ROIG, MANUEL G.; ZHADAN, GALINA G.; SHNYROV, VALERY L.; POLIKARPOV, IGOR. Purification, crystallization and preliminary crystallographic analysis of peroxidase from the palm tree Chamaerops excelsa. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 67, n. 12, p. 1641-1644, . Web of Science Citations: 1. (09/52840-7, 09/14333-6)

REZENDE, CAMILA ALVES; DE LIMA, MARISA APARECIDA; MAZIERO, PRISCILA; DEAZEVEDO, EDUARDO RIBEIRO; GARCIA, WANIUS; POLIKARPOV, IGOR. Chemical and morphological characterization of sugarcane bagasse submitted to a delignification process for enhanced enzymatic digestibility. BIOTECHNOLOGY FOR BIOFUELS, v. 4, p. 1-18, . Web of Science Citations: 177. (09/18354-8, 10/11135-6, 10/08370-3)

MIOTTO, LIS S.; DOS REIS, CAIO V.; NETO, MARIO DE OLIVEIRA; POLIKARPOV, IGOR. SAXS Studies of the Endoglucanase Cel12A from Gloeophyllum trabeum Show Its Monomeric Structure and Reveal the Influence of Temperature on the Structural Stability of the Enzyme. MATERIALS, v. 7, n. 7, p. 5202-5211, . Web of Science Citations: 2. (09/08233-9)

SOUZA, P. C. T.; PUHL, A. C.; MARTINEZ, L.; APARICIO, R.; NASCIMENTO, A. S.; FIGUEIRA, A. C. M.; NGUYEN, P.; WEBB, P.; SKAF, M. S.; POLIKARPOV, I.. Identification of a New Hormone-Binding Site on the Surface of Thyroid Hormone Receptor. MOLECULAR ENDOCRINOLOGY, v. 28, n. 4, p. 534-545, . Web of Science Citations: 18. (13/08293-7, 10/17048-8)

BERNARDINELLI, OIGRES DANIEL; LIMA, MARISA APARECIDA; REZENDE, CAMILA ALVES; POLIKARPOV, IGOR; DEAZEVEDO, EDUARDO RIBEIRO. Quantitative C-13 MultiCP solid-state NMR as a tool for evaluation of cellulose crystallinity index measured directly inside sugarcane biomass. BIOTECHNOLOGY FOR BIOFUELS, v. 8, . Web of Science Citations: 37. (09/18354-8, 10/52362-5, 08/56255-9, 10/08370-3, 10/11135-6)

MELLO, BRUNO LUAN; POLIKARPOV, IGOR. Family 1 carbohydrate binding-modules enhance saccharification rates. AMB EXPRESS, v. 4, . Web of Science Citations: 17. (09/05349-6, 08/56255-9, 10/52362-5)

AFIONIS, STAVROS; STRINGER, LINDSAY C.; FAVRETTO, NICOLA; TOMEI, JULIA; BUCKERIDGE, MARCOS S.. Unpacking Brazil's Leadership in the Global Biofuels Arena: Brazilian Ethanol Diplomacy in Africa. GLOBAL ENVIRONMENTAL POLITICS, v. 16, n. 3, p. 127-150, . Web of Science Citations: 2. (09/52840-7, 08/57908-6)

ELLENA, JAVIER; DE PAULA, KARINA; DE MELO, CRISTIANE C.; DA SILVA, CECILIA C. P.; BEZERRA, BEATRIZ P.; VENANCIO, TIAGO; AYALA, ALEJANDRO P.. Temperature-Driven Isosymmetric Reversible Phase Transition of the Hormone Estradiol 17 beta Valerate. Crystal Growth & Design, v. 14, n. 11, p. 5700-5709, . Web of Science Citations: 8. (09/54035-4)

BUCKERIDGE, MARCOS S.; DE SOUZA, AMANDA P.. Breaking the ``Glycomic Code{''} of Cell Wall Polysaccharides May Improve Second-Generation Bioenergy Production from Biomass. BioEnergy Research, v. 7, n. 4, p. 1065-1073, . Web of Science Citations: 0. (09/52840-7, 08/57908-6)

LIBERATO, MARCELO V.; SILVEIRA, RODRIGO L.; PRATES, ERICA T.; DE ARAUJO, EVANDRO A.; PELLEGRINI, VANESSA O. A.; CAMILO, CESAR M.; KADOWAKI, MARCO A.; NETO, MARIO DE O.; POPOV, ALEXANDER; SKAF, MUNIR S.; et al. Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism. SCIENTIFIC REPORTS, v. 6, . Web of Science Citations: 9. (08/56255-9, 14/10448-1, 13/08293-7, 10/18773-8, 13/15582-5, 09/52840-7)

GODOY, ANDRE S.; DE LIMA, MARIANA Z. T.; CAMILO, CESAR M.; POLIKARPOV, IGOR. Crystal structure of a putative exo-beta-1,3-galactanase from Bifidobacterium bifidum S17. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 72, n. 4, p. 288-293, . Web of Science Citations: 1. (11/05712-3, 08/56255-9, 11/20505-4, 09/52840-7, 09/05328-9)

TOMAZINI JUNIOR, ATILIO; DOLCE, LUCIANO GRACIANI; DE OLIVEIRA NETO, MARIO; POLIKARPOV, IGOR. Xanthomonas campestris expansin-like X domain is a structurally disordered beta-sheet macromolecule capable of synergistically enhancing enzymatic efficiency of cellulose hydrolysis. Biotechnology Letters, v. 37, n. 12, p. 2419-2426, . Web of Science Citations: 4. (10/52362-5, 09/05349-6, 07/08706-9, 08/56255-9)

PELLEGRINI, VANESSA O. A.; SERPA, VIVIANE ISABEL; GODOY, ANDRE S.; CAMILO, CESAR M.; BERNARDES, AMANDA; REZENDE, CAMILA A.; PEREIRA JUNIOR, NEI; CAIRO, JOAO PAULO L. FRANCO; SQUINA, FABIO M.; POLIKARPOV, IGOR. Recombinant Trichoderma harzianum endoglucanase I (Cel7B) is a highly acidic and promiscuous carbohydrate-active enzyme. Applied Microbiology and Biotechnology, v. 99, n. 22, p. 9591-9604, . Web of Science Citations: 11. (11/20977-3, 09/05328-9, 08/56255-9, 10/18773-8, 09/52840-7, 11/05712-3)

SANTOS, MARIA A. M.; SANTOS, SILVIA M.; MATOZO, HUITA C.; PORTUGAL, RODRIGO V.; IULIANO, RODOLFO; FUSCO, ALFREDO; POLIKARPOV, IGOR. Expression, purification, and characterization of rat protein tyrosine phosphatase eta catalytic domain. Protein Expression and Purification, v. 41, n. 1, p. 113-120, . (99/03387-4)

BLEICHER, LUCAS; PRATES, ERICA T.; GOMES, THIAGO C. F.; SILVEIRA, RODRIGO L.; NASCIMENTO, ALESSANDRO S.; ROJAS, ADRIANA L.; GOLUBEV, ALEXANDER; MARTINEZ, LEANDRO; SKAF, MUNIR S.; POLIKARPOV, IGOR. Molecular Basis of the Thermostability and Thermophilicity of Laminarinases: X-ray Structure of the Hyperthermostable Laminarinase from Rhodothermus marinus and Molecular Dynamics Simulations. Journal of Physical Chemistry B, v. 115, n. 24, p. 7940-7949, . Web of Science Citations: 18. (10/08680-2, 10/18849-4, 09/14107-6, 10/16947-9)

TEXTOR, LARISSA C.; COLUSSI, FRANCIELI; SILVEIRA, RODRIGO L.; SERPA, VIVIANE; DE MELLO, BRUNO L.; MUNIZ, JOAO RENATO C.; SQUINA, FABIO M.; PEREIRA, JR., NEI; SKAF, MUNIR S.; POLIKARPOV, IGOR. Joint X-ray crystallographic and molecular dynamics study of cellobiohydrolase I from Trichoderma harzianum: deciphering the structural features of cellobiohydrolase catalytic activity. FEBS Journal, v. 280, n. 1, p. 56-69, . Web of Science Citations: 32. (10/08680-2, 09/54035-4)

MARTINEZ, LEANDRO; NASCIMENTO, ALESSANDRO S.; NUNES, FABIO M.; PHILLIPS, KEVIN; APARICIO, RICARDO; DIAS, SANDRA MARTHA G.; FIGUEIRA, ANA CAROLINA M.; LIN, JEAN H.; NGUYEN, PHUONG; APRILETTI, JAMES W.; et al. Gaining ligand selectivity in thyroid hormone receptors via entropy. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v. 106, n. 49, p. 20717-20722, . Web of Science Citations: 50. (06/00182-8)

TRIVELLA, DANIELA B. B.; DOS REIS, CAIO V.; LIMA, LUIS MAURICIO T. R.; FOGUEL, DEBORA; POLIKARPOV, IGOR. Flavonoid interactions with human transthyretin: Combined structural and thermodynamic analysis. Journal of Structural Biology, v. 180, n. 1, p. 143-153, . Web of Science Citations: 24. (09/54035-4, 06/01708-3)

DE MOURA, PATRICIA RIBEIRO; WATANABE, LEANDRA; BLEICHER, LUCAS; COLAU, DIDIER; DUMOUTIER, LAURE; LEMAIRE, MURIEL M.; RENAULD, JEAN-CHRISTOPHE; POLIKARPOV, IGOR. Crystal structure of a soluble decoy receptor IL-22BP bound to interleukin-22. FEBS Letters, v. 583, n. 7, p. 1072-1077, . Web of Science Citations: 30. (06/00182-8, 06/01534-5)

WATANABE, LEANDRA; DE MOURA, PATRICIA RIBEIRO; NASCIMENTO, ALESSANDRO SILVA; COLAU, DIDIER; DUMOUTIER, LAURE; RENAULD, JEAN-CHRISTOPHE; POLIKARPOV, IGOR. Crystallization and preliminary X-ray diffraction analysis of human IL-22 bound to its soluble decoy receptor IL-22BP. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 65, n. 2, p. 102-104, . Web of Science Citations: 1. (06/00182-8, 06/01534-5)

KRAUCHENCO, SANDRA; MARTINS, NADIA H.; SANCHES, MARIO; POLIKARPOV, IGOR. Effectiveness of commercial inhibitors against subtype F HIV-1 protease. Journal of Enzyme Inhibition and Medicinal Chemistry, v. 24, n. 3, p. 638-645, . Web of Science Citations: 4. (06/00182-8, 99/03387-4)

MARTINEZ, LEANDRO; SOUZA, PAULO C. T.; GARCIA, WANIUS; BATISTA, FERNANDA A. H.; PORTUGAL, RODRIGO V.; NASCIMENTO, ALESSANDRO S.; NAKAHIRA, MARCEL; LIMA, LUIS M. T. R.; POLIKARPOV, IGOR; SKAF, MUNIR S.. On the Denaturation Mechanisms of the Ligand Binding Domain of Thyroid Hormone Receptors. Journal of Physical Chemistry B, v. 114, n. 3, p. 1529-1540, . Web of Science Citations: 5. (06/00182-8)

NASCIMENTO, ALESSANDRO S.; MUNIZ, JOAO RENATO C.; APARICIO, RICARDO; GOLUBEV, ALEXANDER M.; POLIKARPOV, IGOR. Insights into the structure and function of fungal beta-mannosidases from glycoside hydrolase family 2 based on multiple crystal structures of the Trichoderma harzianum enzyme. FEBS Journal, v. 281, n. 18, SI, p. 4165-4178, . Web of Science Citations: 10. (08/56255-9, 09/52840-7)

MIOTTO, LIS SCHWARTZ; DE REZENDE, CAMILA ALVES; BERNARDES, AMANDA; SERPA, VIVIANE ISABEL; TSANG, ADRIAN; POLIKARPOV, IGOR. The Characterization of the Endoglucanase Cel12A from Gloeophyllum trabeum Reveals an Enzyme Highly Active on beta-Glucan. PLoS One, v. 9, n. 9, . Web of Science Citations: 12. (10/52362-5, 09/08233-9, 12/22802-9, 08/56255-9, 09/52840-7)

RUSSO, MARCOS G.; BRUSAU, ELENA V.; ELLENA, JAVIER; NARDA, GRISELDA E.. Solid-State Supramolecular Synthesis Based on the N-H center dot center dot center dot O Heterosynthon: An Approach to Solve the Polymorphism Problem in Famotidine. Journal of Pharmaceutical Sciences, v. 103, n. 11, p. 3754-3763, . Web of Science Citations: 2. (09/54035-4)

FATTORI, JULIANA; CAMPOS, JESSICA L. O.; DORATIOTO, TABATA R.; ASSIS, LUCAS M.; VITORINO, MARIELA T.; POLIKARPOV, IGOR; XAVIER-NETO, JOSE; FIGUEIRA, ANA CAROLINA M.. RXR Agonist Modulates TR: Corepressor Dissociation Upon 9-cis Retinoic Acid Treatment. MOLECULAR ENDOCRINOLOGY, v. 29, n. 2, p. 258-273, . Web of Science Citations: 9. (11/23725-5, 11/23659-2, 13/08743-2, 10/17048-8)

BERNARDES, AMANDA; TEXTOR, LARISSA C.; SANTOS, JADEMILSON C.; CUADRADO, NAZARET HIDALGO; KOSTETSKY, EDUARD YA.; ROIG, MANUEL G.; BAVRO, VASSILIY N.; MUNIZ, JOAO R. C.; SHNYROV, VALERY L.; POLIKARPOV, IGOR. Crystal structure analysis of peroxidase from the palm tree Chamaerops excelsa. Biochimie, v. 111, p. 58-69, . Web of Science Citations: 8. (09/05349-6, 12/22802-9, 08/56255-9, 10/52362-5)

SEIKI KADOWAKI, MARCO ANTONIO; CAMILO, CESAR MOISES; MUNIZ, AMANDA BERNARDES; POLIKARPOV, IGOR. Functional Characterization and Low-Resolution Structure of an Endoglucanase Cel45A from the Filamentous Fungus Neurospora crassa OR74A: Thermostable Enzyme with High Activity Toward Lichenan and beta-Glucan. MOLECULAR BIOTECHNOLOGY, v. 57, n. 6, p. 574-588, . Web of Science Citations: 7. (09/54035-4, 08/56255-9, 10/08680-2, 11/20505-4, 09/11536-3)

LIMA, LEONARDO H. F.; SERPA, VIVIANE I.; ROSSETO, FLAVIO R.; SARTORI, GERALDO RODRIGUES; DE OLIVEIRA NETO, MARIO; MARTINEZ, LEANDRO; POLIKARPOV, IGOR. Small-angle X-ray scattering and structural modeling of full-length: cellobiohydrolase I from Trichoderma harzianum. Cellulose, v. 20, n. 4, p. 1573-1585, . Web of Science Citations: 7. (08/56255-9, 07/08706-9, 10/16947-9, 09/52840-7, 08/05637-9)

CAMILO, CESAR M.; POLIKARPOV, IGOR. High-throughput cloning, expression and purification of glycoside hydrolases using Ligation-Independent Cloning (LIC). Protein Expression and Purification, v. 99, p. 35-42, . Web of Science Citations: 21. (08/56255-9, 10/08680-2, 09/54035-4, 09/11536-3)

LIBERATO, MARCELO VIZONA; GENEROSO, WESLEY CARDOSO; MALAGO, JR., WILSON; HENRIQUE-SILVA, FLAVIO; POLIKARPOV, IGOR. Crystallization and preliminary X-ray diffraction analysis of endoglucanase III from Trichoderma harzianum. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 68, n. 3, p. 306-309, . Web of Science Citations: 5. (09/52840-7, 09/14333-6)

BERNARDES, AMANDA; BATISTA, FERNANDA A. H.; NETO, MARIO DE OLIVEIRA; FIGUEIRA, ANA CAROLINA M.; WEBB, PAUL; SAIDEMBERG, DANIEL; PALMA, MARIO S.; POLIKARPOV, IGOR. Low-Resolution Molecular Models Reveal the Oligomeric State of the PPAR and the Conformational Organization of Its Domains in Solution. PLoS One, v. 7, n. 2, . Web of Science Citations: 12. (06/00182-8, 08/00078-1, 08/05637-9, 10/17048-8)

DOS REIS, CAIO VINICIUS; BERNARDES, AMANDA; POLIKARPOV, IGOR. Expression, purification, crystallization and preliminary X-ray diffraction analysis of Bifidobacterium adolescentis xylose isomerase. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 69, n. 5, p. 588-591, . Web of Science Citations: 0. (08/56255-9, 09/52840-7)

FLORINDO, RENATA N.; SOUZA, VALQUIRIA P.; MANZINE, LIVIA R.; CAMILO, CESAR M.; MARANA, SANDRO R.; POLIKARPOV, IGOR; NASCIMENTO, ALESSANDRO S.. Structural and biochemical characterization of a GH3 beta-glucosidase from the probiotic bacteria Bifidobacterium adolescentis. Biochimie, v. 148, p. 107-115, . Web of Science Citations: 3. (14/19439-5, 14/06565-2, 08/56255-9)

GONSALVES DE FARIA, CLARA MARIA; INADA, NATALIA MAYUMI; VOLLET-FILHO, JOSE DIRCEU; BAGNATO, VANDERLEI SALVADOR. A threshold dose distribution approach for the study of PDT resistance development A threshold distribution approach for the study of PDT resistance. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY, v. 182, p. 85-91, . Web of Science Citations: 0. (15/06579-6, 09/54035-4, 13/07276-1)

SANTO, MELISSA ESPIRITO; REZENDE, CAMILA A.; BERNARDINELLI, OIGRES D.; PEREIRA, JR., NEI; CURVELO, ANTONIO A. S.; DEAZEVEDO, EDUARDO R.; GUIMARAES, FRANSCISCO E. G.; POLIKARPOV, IGOR. Structural and compositional changes in sugarcane bagasse subjected to hydrothermal and organosolv pretreatments and their impacts on enzymatic hydrolysis. INDUSTRIAL CROPS AND PRODUCTS, v. 113, p. 64-74, . Web of Science Citations: 8. (15/13684-0, 10/52362-5)

PELLEGRINI, VANESSA O. A.; BERNARDES, AMANDA; REZENDE, CAMILA A.; POLIKARPOV, IGOR. Cellulose fiber size defines efficiency of enzymatic hydrolysis and impacts degree of synergy between endo- and exoglucanases. Cellulose, v. 25, n. 3, p. 1865-1881, . Web of Science Citations: 1. (15/13684-0, 12/22802-9, 10/18773-8, 16/13602-7)

CRUZ, GLAUBER; SANTIAGO, PATRICIA A.; BRAZ, CARLOS E. M.; SELEGHIM, JR., PAULO; CRNKOVIC, PAULA MANOEL. Investigation into the physical-chemical properties of chemically pretreated sugarcane bagasse. JOURNAL OF THERMAL ANALYSIS AND CALORIMETRY, v. 132, n. 2, p. 1039-1053, . Web of Science Citations: 2. (10/20681-4)

EVANGELISTA, DANILO ELTON; SEIKI KADOWAKI, MARCO ANTONIO; MELLO, BRUNO LUAN; POLIKARPOV, IGOR. Biochemical and biophysical characterization of novel GH10 xylanase prospected from a sugar cane bagasse compost-derived microbial consortia. International Journal of Biological Macromolecules, v. 109, p. 560-568, . Web of Science Citations: 2. (15/13684-0, 11/20505-4, 10/52362-5, 11/21608-1)

DE ARAUJO, EVANDRO ARES; MANZINE, LIVIA REGINA; PIIADOV, VASSILI; SEIKI KADOWAKI, MARCO ANTONIO; POLIKARPOV, IGOR. Biochemical characterization, low-resolution SAXS structure and an enzymatic cleavage pattern of BlCel48 from Bacillus licheniformis. International Journal of Biological Macromolecules, v. 111, p. 302-310, . Web of Science Citations: 1. (15/13684-0, 10/52362-5, 11/20505-4, 14/00769-5)

ROSSETO, FLAVIO RODOLFO; MANZINE, LIVIA REGINA; NETO, MARIO DE OLIVEIRA; POLIKARPOV, IGOR. Biophysical and biochemical studies of a major endoglucanase secreted by Xanthomonas campestris pv. campestris.. Enzyme and Microbial Technology, v. 91, p. 1-7, . Web of Science Citations: 2. (08/56255-9, 09/54035-4, 10/08370-3, 10/16542-9)

LEITE, D. C. C.; GRANDIS, A.; TAVARES, E. Q. P.; PIOVEZANI, A. R.; PATTATHIL, S.; AVCI, U.; ROSSINI, A.; CAMBLER, A.; DE SOUZA, A. P.; HAHN, M. G.; et al. Cell wall changes during the formation of aerenchyma in sugarcane roots. ANNALS OF BOTANY, v. 120, n. 5, SI, p. 693-708, . Web of Science Citations: 6. (08/57908-6, 10/12833-9, 09/52840-7, 10/17070-3, 10/17104-5)

FLORINDO, RENATA N.; SOUZA, VALQUIRIA P.; MUTTI, HEMILY S.; CAMILO, CESAR; MANZINE, LIVIA REGINA; MARANA, SANDRO R.; POLIKARPOV, IGOR; NASCIMENTO, ALESSANDRO S.. Structural insights into beta-glucosidase transglycosylation based on biochemical, structural and computational analysis of two GH1 enzymes from Trichoderma harzianum. NEW BIOTECHNOLOGY, v. 40, n. B, p. 218-227, . Web of Science Citations: 5. (14/19439-5, 14/06565-2, 08/56255-9)

EVANGELISTA, DANILO ELTON; DE ARAUJO, EVANDRO A.; OLIVEIRA NETO, MARIO; SEIKI KADOWAKI, MARCO ANTONIO; POLIKARPOV, IGOR. Biochemical characterization and low-resolution SAXS structure of an exopolygalacturonase from Bacillus licheniformis. NEW BIOTECHNOLOGY, v. 40, n. B, p. 268-274, . Web of Science Citations: 3. (15/13684-0, 11/20505-4)

ALESSI, ANNA M.; BIRD, SUSANNAH M.; BENNETT, JOSEPH P.; OATES, NICOLA C.; LI, YI; DOWLE, ADAM A.; POLIKARPOV, IGOR; YOUNG, J. PETER W.; MCQUEEN-MASON, SIMON J.; BRUCE, NEIL C.. Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities. SCIENTIFIC REPORTS, v. 7, . Web of Science Citations: 8. (10/52362-5)

ALESSI, ANNA M.; BIRD, SUSANNAH M.; OATES, NICOLA C.; LI, YI; DOWLE, ADAM A.; NOVOTNY, ETELVINO H.; DEAZEVEDO, EDUARDO R.; BENNETT, JOSEPH P.; POLIKARPOV, IGOR; YOUNG, J. PETER W.; et al. Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies. BIOTECHNOLOGY FOR BIOFUELS, v. 11, . Web of Science Citations: 4. (10/52362-5)

RAZZERA, GUILHERME; VERNAL, JAVIER; PORTUGAL, RODRIGO V.; CALGARO, MARCOS R.; FERNANDEZ, PABLO; ZAKIN, MARIO M.; POLIKARPOV, IGOR; TERENZI, HERNÁN. Expression, purification, and initial structural characterization of rat orphan nuclear receptor NOR-1 LBD domain. Protein Expression and Purification, v. 37, n. 2, p. 443-449, . (99/03387-4)

NAGEM, RONALDO ALVES PINTO; COLAU, DIDIER; DUMOUTIER, LAURE; RENAULD, JEAN-CHRISTOPHE; OGATA, CRAIG; POLIKARPOV, IGOR. Crystal structure of recombinant human interleukin-22. Structure, v. 10, n. 8, p. 1051-1062, . (99/03387-4)

CALGARO, MARCOS R.; OLIVEIRA NETO, MARIO DE; FIGUEIRA, ANA CAROLINA M.; SANTOS, MARIA A. M.; PORTUGAL, RODRIGO V.; GUZZI, CAROLINA A.; SAIDEMBERG, DANIEL M.; BLEICHER, LUCAS; VERNAL, JAVIER; FERNANDEZ, PABLO; et al. Orphan nuclear receptor NGFI-B forms dimers with nonclassical interface. Protein Science, v. 16, n. 8, p. 1762-1772, .

NAKAMURA, ALINE M.; SEIKI KADOWAKI, MARCO ANTONIO; GODOY, ANDRE; NASCIMENTO, ALESSANDRO S.; POLIKARPOV, IGOR. Low-resolution envelope, biophysical analysis and biochemical characterization of a short-chain specific and halotolerant carboxylesterase from Bacillus licheniformis. International Journal of Biological Macromolecules, v. 120, n. B, p. 1893-1905, . Web of Science Citations: 0. (11/20505-4)

MAQUERA-HUACHO, PATRICIA MILAGROS; TONON, CAROLINE CORADI; CORREIA, MARILIA FERREIRA; FRANCISCONI, RENATA SERIGNOLI; FERREIRA BORDINI, ESTER ALVES; MARCANTONIO, ELCIO; PALOMARI SPOLIDORIO, DENISE MADALENA. In vitro antibacterial and cytotoxic activities of carvacrol and terpinen-4-ol against biofilm formation on titanium implant surfaces. BIOFOULING, v. 34, n. 6, p. 699-709, . Web of Science Citations: 1. (09/54035-4, 15/08742-1)

BESSER, KATRIN; MALYON, GRAHAM P.; EBORALL, WILLIAM S.; DA CUNHA, GIOVANNI PARO; FILGUEIRAS, JEFFERSON G.; DOWLE, ADAM; GARCIA, LOURDES CRUZ; PAGE, SAMUEL J.; DUPREE, RAY; KERN, MARCELO; et al. Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans. NATURE COMMUNICATIONS, v. 9, . Web of Science Citations: 2. (15/13684-0, 17/24465-3)

BERTO, GABRIELA LEILA; VELASCO, JOSMAN; CABOS RIBEIRO, CAIO TASSO; ZANPHORLIN, LETICIA MARIA; DOMINGUES, MARIANE NORONHA; MURAKAMI, MARIO TYAGO; POLIKARPOV, IGOR; DE OLIVEIRA, LEANDRO CRISTANTE; FERRAZ, ANDRE; SEGATO, FERNANDO. Functional characterization and comparative analysis of two heterologous endoglucanases from diverging subfamilies of glycosyl hydrolase family 45. Enzyme and Microbial Technology, v. 120, p. 23-35, . Web of Science Citations: 1. (14/18714-2, 15/13684-0, 15/26982-0, 14/06923-6)

FERREIRA BORDINI, ESTER ALVES; TONON, CAROLINE CORADI; FRANCISCONI, RENATA SERIGNOLI; CINTRA MAGALHAES, FERNANDO AUGUSTO; MAQUERA HUACHO, PATRICIA MILAGROS; BEDRAN, TELMA LOMBARDO; PRATAVIEIRA, SEBASTIAO; SPOLIDORIO, LUIS CARLOS; SPOLIDORIO, DENISE PALOMARI. Antimicrobial effects of terpinen-4-ol against oral pathogens and its capacity for the modulation of gene expression. BIOFOULING, v. 34, n. 7, p. 815-825, . Web of Science Citations: 0. (09/54035-4, 14/23241-6, 15/08742-1)

PIIADOV, VASSILI; DE ARAUJO, EVANDRO ARES; OLIVEIRA NETO, MARIO; CRAIEVICH, ALDO FELIX; POLIKARPOV, IGOR. SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale. Protein Science, v. 28, n. 2, p. 454-463, . Web of Science Citations: 3. (15/13684-0, 14/00769-5)

PUHL, ANA C.; WEBB, PAUL; POLIKARPOV, IGOR. Structural dataset for the PPAR gamma V290M mutant. DATA IN BRIEF, v. 7, p. 1430-1437, . Web of Science Citations: 1. (06/00182-8)

DE SOUZA, LARISSA MARILA; INADA, NATALIA MAYUMI; VENTURINI, FRANCINE PERRI; CARMONA-VARGAS, CHRISTIAN C.; PRATAVIEIRA, SEBASTIAO; DE OLIVEIRA, KLEBER THIAGO; KURACHI, CRISTINA; BAGNATO, VANDERLEI SALVADOR. Photolarvicidal effect of curcuminoids from Curcuma longa Linn. against Aedes aegypti larvae. JOURNAL OF ASIA-PACIFIC ENTOMOLOGY, v. 22, n. 1, p. 151-158, . Web of Science Citations: 1. (18/00106-7, 09/54035-4, 13/07276-1)

SONODA, MILTON T.; GODOY, ANDRE S.; PELLEGRINI, VANESSA O. A.; KADOWAKI, MARCO A. S.; NASCIMENTO, ALESSANDRO S.; POLIKARPOV, IGOR. Structure and dynamics of Trichoderma harzianum Cel7B suggest molecular architecture adaptations required for a wide spectrum of activities on plant cell wall polysaccharides. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, v. 1863, n. 6, p. 1015-1026, . Web of Science Citations: 0. (15/13684-0, 14/06565-2, 17/18173-0)

SEGATO, FERNANDO; BERTO, GABRIELA L.; DE ARAUJO, EVANDRO ARES; MUNIZ, JOAO RENATO; POLIKARPOV, IGOR. Expression, purification, crystallization and preliminary X-ray diffraction analysis of Aspergillus terreus endo-beta-1,4-glucanase from glycoside hydrolase family 12. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, v. 70, n. 2, p. 267-270, . Web of Science Citations: 3. (10/16947-9, 09/52840-7, 08/05637-9)

FARRO, ERICK GIANCARLO S.; LEITE, ANA ELISA T.; SILVA, ISABELA A.; FILGUEIRAS, JEFFERSON G.; DE AZEVEDO, EDUARDO R.; POLIKARPOV, IGOR; NASCIMENTO, ALESSANDRO S.. GH43 endo-arabinanase from Bacillus licheniformis: Structure, activity and unexpected synergistic effect on cellulose enzymatic hydrolysis. International Journal of Biological Macromolecules, v. 117, p. 7-16, . Web of Science Citations: 0. (15/13684-0, 14/06565-2, 14/03768-0)

ROJAS, A. L.; NAGEM, R. A. P.; NEUSTROEV, K. N.; ARAND, M.; ADAMSKA, M.; ENEYSKAYA, E. V.; KULMINSKAYA, A. A.; GARRATT, R. C.; GOLUBEV, A. M.; POLIKARPOV, I.. Crystal structures of beta-galactosidase from Penicillium sp. and its complex with galactose. Journal of Molecular Biology, v. 343, n. 5, p. 1281-1292, . (99/03387-4)

KIM, KYOUNG-YUN; NASCIMENTO, ALESSANDRO S.; GOLUBEV, ALEXANDER M.; POLIKARPOV, IGOR; KIM, CHUNG-SEI; KANG, SU-IL; KIM, SU-IL. Catalytic mechanism of inulinase from Arthrobacter sp. S37. Biochemical and Biophysical Research Communications, v. 371, n. 4, p. 600-605, . (06/00182-8)

NASCIMENTO, ALESSANDRO S.; KRAUCHENCO, SANDRA; GOLUBEV, ALEXANDER M.; GUSTCHINA, ALLA; WLODAWER, ALEXANDER; POLIKARPOV, IGOR. Statistical coupling analysis of aspartic proteinases based on crystal structures of the Trichoderma reesei enzyme and its complex with pepstatin A. Journal of Molecular Biology, v. 382, n. 3, p. 763-778, . Web of Science Citations: 7. (99/03387-4)

WATANABE, LEANDRA; DE MOURA, PATRICIA RIBEIRO; BLEICHER, LUCAS; NASCIMENTO, ALESSANDRO S.; ZAMORANO, LAURA S.; CALVETE, JUAN J.; SANZ, LIBIA; PEREZ, ALICIA; BURSAKOV, SERGEY; ROIG, MANUEL G.; et al. Crystal structure and statistical coupling analysis of highly glycosylated peroxidase from royal palm tree (Roystonea regia). Journal of Structural Biology, v. 169, n. 2, p. 226-242, . Web of Science Citations: 31. (06/00182-8)

NASCIMENTO, ALESSANDRO S.; DIAS, SANDRA MARTHA GOMES; NUNES, FÁBIO M.; APARÍCIO, RICARDO; AMBROSIO, ANDRE L. B.; BLEICHER, LUCAS; FIGUEIRA, ANA CAROLINA M.; SANTOS, MARIA AUXILIADORA M.; OLIVEIRA NETO, MÁRIO DE; FISCHER, HANNES; et al. Structural rearrangements in the thyroid hormone receptor hinge domain and their putative role in the receptor function. Journal of Molecular Biology, v. 360, n. 3, p. 586-598, . (06/00182-8)

AMBROSIO, ANDRE L. B.; DIAS, SANDRA M. G.; POLIKARPOV, IGOR; ZURIER, ROBERT B.; BURSTEIN, SUMNER H.; GARRATT, RICHARD C.. Ajulemic acid, a synthetic nonpsychoactive cannabinoid acid, bound to the ligand binding domain of the human peroxisome proliferator-activated receptor gamma. Journal of Biological Chemistry, v. 282, n. 25, p. 18625-18633, . (06/00182-8, 98/14138-2, 99/03387-4)

TSUCHIDA, JEFFERSON ESQUINA; REZENDE, CAMILA ALVES; DE OLIVEIRA-SILVA, RODRIGO; LIMA, MARISA APARECIDA; D'EURYDICE, MARCEL NOGUEIRA; POLIKARPOV, IGOR; BONAGAMBA, TITO JOSE. Nuclear magnetic resonance investigation of water accessibility in cellulose of pretreated sugarcane bagasse. BIOTECHNOLOGY FOR BIOFUELS, v. 7, . Web of Science Citations: 23. (08/56255-9, 12/22119-7, 09/18354-8, 10/11135-6, 09/54880-6, 10/08370-3)

BERNARDES, A.; PELLEGRINI, V. O. A.; CURTOLO, F.; CAMILO, C. M.; MELLO, B. L.; JOHNS, M. A.; SCOTT, J. L.; GUIMARAES, F. E. C.; POLIKARPOV, I.. Carbohydrate binding modules enhance cellulose enzymatic hydrolysis by increasing access of cellulases to the substrate. Carbohydrate Polymers, v. 211, p. 57-68, . Web of Science Citations: 0. (15/13684-0, 10/18773-8)

KADOWAKI, MARCO A. S.; VARNAI, ANIKO; JAMESON, JOHN-KRISTIAN; LEITE, ANA E. T.; COSTA-FILHO, ANTONIO J.; KUMAGAI, PATRICIA S.; PRADE, ROLF A.; POLIKARPOV, IGOR; EIJSINK, VINCENT G. H.. Functional characterization of a lytic polysaccharide monooxygenase from the thermophilic fungus Myceliophthora thermophila. PLoS One, v. 13, n. 8, . Web of Science Citations: 3. (15/13684-0, 11/20505-4)

SEIKI KADOWAKI, MARCO ANTONIO; DE GODOY, MARIANA ORTIZ; KUMAGAI, PATRICIA SUEMY; DA COSTA-FILHO, ANTONIO JOSE; MORT, ANDREW; PRADE, ROLF ALEXANDER; POLIKARPOV, IGOR. Characterization of a New Glyoxal Oxidase from the Thermophilic Fungus Myceliophthora thermophila M77: Hydrogen Peroxide Production Retained in 5-Hydroxymethylfurfural Oxidation. CATALYSTS, v. 8, n. 10, . Web of Science Citations: 0. (15/13684-0, 11/20505-4)

DE AZEVEDO, ERIKA CHANG; NASCIMENTO, ALESSANDRO S.. Energy landscape of the domain movement in Staphylococcus aureus UDP-N-acetylglucosamine 2-epimerase. Journal of Structural Biology, v. 207, n. 2, p. 158-168, . Web of Science Citations: 0. (15/13684-0, 17/18173-0, 15/26722-8)

VIEIRA, F. R.; PECCHIA, J. A.; SEGATO, F.; POLIKARPOV, I.. Exploring oyster mushroom (Pleurotus ostreatus) substrate preparation by varying phase I composting time: changes in bacterial communities and physicochemical composition of biomass impacting mushroom yields. Journal of Applied Microbiology, v. 126, n. 3, p. 931-944, . Web of Science Citations: 0. (13/21545-5, 14/18714-2, 15/13684-0, 09/52840-7)

DE ARAUJO, EVANDRO ARES; DE OLIVEIRA NETO, MARIO; POLIKARPOV, IGOR. Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis. Applied Microbiology and Biotechnology, v. 103, n. 3, p. 1275-1287, . Web of Science Citations: 0. (15/13684-0)

SARTORI, GERALDO RODRIGUES; NASCIMENTO, ALESSANDRO S.. Comparative Analysis of Electrostatic Models for Ligand Docking. FRONTIERS IN MOLECULAR BIOSCIENCES, v. 6, . Web of Science Citations: 0. (15/13684-0, 17/18173-0, 15/26722-8)

PUHL, ANA C.; BERNARDES, AMANDA; SILVEIRA, RODRIGO L.; YUAN, JING; CAMPOS, JESSICA L. O.; SAIDEMBERG, DANIEL M.; PALMA, MARIO S.; CVORO, ALEKSANDRA; AYERS, STEPHEN D.; WEBB, PAUL; et al. Mode of Peroxisome Proliferator-Activated Receptor gamma Activation by Luteolin. MOLECULAR PHARMACOLOGY, v. 81, n. 6, p. 788-799, . Web of Science Citations: 53. (10/08680-2)

BATISTA, FERNANDA A. H.; TRIVELLA, DANIELA B. B.; BERNARDES, AMANDA; GRATIERI, JOYCE; OLIVEIRA, PAULO S. L.; FIGUEIRA, ANA CAROLINA M.; WEBB, PAUL; POLIKARPOV, IGOR. Structural Insights into Human Peroxisome Proliferator Activated Receptor Delta (PPAR-Delta) Selective Ligand Binding. PLoS One, v. 7, n. 5, . Web of Science Citations: 25. (06/00182-8, 09/53853-5, 10/17048-8)

CUNHA LIMA, SUZANA T.; NGUYEN, NGOC-HA; TOGASHI, MARIE; APRILETTI, JAMES W.; NGUYEN, PHUONG; POLIKARPOV, IGOR; SCANLAN, THOMAS S.; BAXTER, JOHN D.; WEBB, PAUL. Differential effects of TR ligands on hormone dissociation rates: Evidence for multiple ligand entry/exit pathways. JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY, v. 117, n. 4-5, p. 125-131, . Web of Science Citations: 3. (06/00182-8)

GOLUBEV, ALEXANDER M.; ROJAS, ADRIANA L.; NASCIMENTO, ALESSANDRO S.; BLEICHER, LUCAS; KULMINSKAYA, ANNA A.; ENEYSKAYA, ELENA V.; POLIKARPOV, IGOR. Crystallization and Preliminary Crystallographic Analysis of Laminarinase from Rhodothermus marinus: A Case of Pseudomerohedral Twinning. PROTEIN AND PEPTIDE LETTERS, v. 15, n. 10, p. 1142-1144, . Web of Science Citations: 1. (06/00182-8)

GARCIA, WANIUS; FIGUEIRA, ANA CAROLINA M.; NETO, MARIO DE OLIVEIRA; DE GUZZI, CAROLINA A.; BUZZA, HILDE H.; PORTUGAL, RODRIGO V.; CALGARO, MARCOS R.; POLIKARPOV, IGOR. Probing conformational changes in orphan nuclear receptor: The NGFI-B intermediate is a partially unfolded dimer. Biophysical Chemistry, v. 137, n. 2-3, p. 81-87, . Web of Science Citations: 1. (06/00182-8)

BLEICHER, LUCAS; DE MOURA, PATRICIA RIBEIRO; WATANABE, LEANDRA; COLAU, DIDIER; DUMOUTIER, LAURE; RENAULD, JEAN-CHRISTOPHE; POLIKARPOV, IGOR. Crystal structure of the IL-22/IL-22R1 complex and its implications for the IL-22 signaling mechanism. FEBS Letters, v. 582, n. 20, p. 2985-2992, . Web of Science Citations: 58. (06/00182-8, 06/01534-5)

MARTINEZ, LEANDRO; POLIKARPOV, IGOR; SKAF, MUNIR S.. Only subtle protein conformational adaptations are required for ligand binding to thyroid hormone receptors: Simulations using a novel multipoint steered molecular dynamics approach. Journal of Physical Chemistry B, v. 112, n. 34, p. 10741-10751, . Web of Science Citations: 49. (06/00182-8)

NASCIMENTO, ALESSANDRO S.. Structural requirement for PPAR gamma binding revealed by a meta analysis of holo-crystal structures. Biochimie, v. 92, n. 5, p. 499-506, . Web of Science Citations: 4.

MARTINS, NÁDIA HELENA; CALAZANS, ALEXANDRE; BRINDEIRO, RODRIGO DE MORAES; TANURI, AMILCAR; ANTUNES, OCTAVIO AUGUSTO CEVA; POLIKARPOV, IGOR; SANCHES, MARIO. Crystallization of a non-B and a B mutant HIV protease. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, v. 60, n. 9, p. 1625-1627, . (99/03387-4)

KRAUCHENCO‚ S.; NAGEM‚ R.A.P.; DA SILVA‚ J.A.; MARANGONI‚ S.; POLIKARPOV‚ I.. Three-dimensional structure of an unusual Kunitz (STI) type trypsin inhibitor from Copaifera langsdorffii. Biochimie, v. 86, n. 3, p. 167-172, . (99/03387-4)

MATOZO‚ H.C.; SANTOS‚ M.A.M.; DE OLIVEIRA NETO‚ M.; BLEICHER‚ L.; LIMA‚ L.M.T.R.; IULIANO‚ R.; FUSCO‚ A.; POLIKARPOV‚ I.. Low-Resolution Structure and Fluorescence Anisotropy Analysis of Protein Tyrosine Phosphatase [eta] Catalytic Domain. BIOPHYSICAL JOURNAL, v. 92, n. 12, p. 4424-4432, . (99/03387-4, 06/00182-8)

BLEICHER‚ L.; APARICIO‚ R.; NUNES‚ F.; MARTINEZ‚ L.; DIAS‚ S.G.; FIGUEIRA‚ A.; SANTOS‚ M.; VENTURELLI‚ W.; DA SILVA‚ R.; DONATE‚ P.; et al. Structural basis of GC-1 selectivity for thyroid hormone receptor isoforms. BMC STRUCTURAL BIOLOGY, v. 8, n. 1, p. 8, . (06/00182-8)

NASCIMENTO‚ A.; CATALANO-DUPUY‚ D.; BERNARDES‚ A.; NETO‚ M.; SANTOS‚ M.; CECCARELLI‚ E.; POLIKARPOV‚ I.. Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+. BMC STRUCTURAL BIOLOGY, v. 7, n. 1, p. 69, . (06/00182-8)

MIGLIORINI FIGUEIRA, ANA CAROLINA; LIMA, LUIS MAURICIO T. R.; LIMA, LEONARDO H. F.; RANZANI, AMERICO T.; MULE, GUILHERME DOS SANTOS; POLIKARPOV, IGOR. Recognition by the Thyroid Hormone Receptor of Canonical DNA Response Elements. BIOCHEMISTRY, v. 49, n. 5, p. 893-904, . Web of Science Citations: 10. (06/00182-8, 08/00078-1)

NAGEM‚ R.A.P.; POLIKARPOV‚ I.; DAUTER‚ Z.. Phasing on rapidly soaked ions. Methods in Enzymology, v. 374, p. 120-137, .

Patent applications

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SISTEMA DE INJEÇÃO DE GASES PARA RETORES DE AGITAÇÃO PNEUMÁTICA BR1020140186379 - Universidade de São Paulo (USP). Igor Polikarpov; Patrícia Aparecida Santiago Monteiro; Paulo Seleghim Júnior - July 2014, 29

BIOSSENSOR PARA DETECÇÃO DE HORMÔNIOS TIREOIDIANOS E APLICAÇÕES EM NANOMEDICINA PI1101437-7 - Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP); Universidade de São Paulo (USP). Valtencir Zucolotto; Igor Polikarpov; Luana Bendo; Ana Carolina Migliorini Figueira - April 2011, 04

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