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Helder Takashi Imoto Nakaya

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Universidade de São Paulo (USP). Faculdade de Ciências Farmacêuticas (FCF)  (Institutional affiliation for the last research proposal)
Birthplace: Brazil

Helder Nakaya is an assistant professor at Emory University School of Medicine in the Department of Pathology. He has a PhD in Molecular Biology with extensive training in Bioinformatics. He is an expert in Systems Vaccinology, an interdisciplinary field that combines systems-wide measurements, networks, and predictive modeling in the context of vaccines and infectious disease. Dr. Nakaya has developed systems biology approaches to understand and predict the mechanisms of vaccine induced-immunity for Yellow Fever, seasonal Influenza, Meningococcal, and Tularemia vaccines. Additionally, Dr. Nakaya is a newly appointed professor at the University of Sao Paulo, Brazil, in the Department of Clinical Analyses and Toxicology, Institute of Pharmaceutical Science. His lab will focus on investigating the basis of infectious diseases using computational systems biology. Website: (Source: Lattes Curriculum)

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FAPESP support in numbers * Updated November 09, 2019
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Use this Research Supported by FAPESP (BV/FAPESP) channel only to send messages referring to FAPESP-funded scientific projects.





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Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (12)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

Data from Web of Science

CARDOZO, LUCAS E.; RUSSO, PEDRO S. T.; GOMES-CORREIA, BRUNO; ARAUJO-PEREIRA, MARIANA; SEPULVEDA-HERMOSILLA, GONZALO; MARACAJA-COUTINHO, VINICIUS; NAKAYA, I, HELDER. webCEMiTool: Co-expression Modular Analysis Made Easy. FRONTIERS IN GENETICS, v. 10, . Web of Science Citations: 0. (13/08216-2, 12/19278-6, 18/10748-6, 17/05762-7)

FUKUTANI, KIYOSHI F.; NASCIMENTO-CARVALHO, CRISTIANA M.; BOUZAS, MAIARA L.; OLIVEIRA, JULIANA R.; BARRAL, ALDINA; DIERCKX, TIM; KHOURI, RICARDO; NAKAYA, HELDER I.; ANDRADE, BRUNO B.; VAN WEYENBERGH, JOHAN; et al. In situ Immune Signatures and Microbial Load at the Nasopharyngeal Interface in Children With Acute Respiratory Infection. FRONTIERS IN MICROBIOLOGY, v. 9, . Web of Science Citations: 0. (12/19278-6, 17/50137-3)

JOCHEMS, SIMON P.; MARCON, FERNANDO; CARNIEL, BEATRIZ F.; HOLLOWAY, MARK; MITSI, ELENA; SMITH, EMMA; GRITZFELD, JENNA F.; SOLORZANO, CARLA; REINE, JESUS; POJAR, SHERIN; et al. Inflammation induced by influenza virus impairs human innate immune control of pneumococcus. NATURE IMMUNOLOGY, v. 19, n. 12, p. 1299+, . Web of Science Citations: 8. (13/08216-2, 12/19278-6)

DE LIMA, DIOGENES S.; CARDOZO, LUCAS E.; MARACAJA-COUTINHO, VINICIUS; SUHRBIER, ANDREAS; MANE, KARIM; JEFFRIES, DAVID; SILVEIRA, EDUARDO L. V.; AMARAL, PAULO P.; RAPPUOLI, RINO; DE SILVA, THUSHAN I.; et al. Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v. 116, n. 34, p. 17121-17126, . Web of Science Citations: 0. (13/08216-2, 12/19278-6, 17/50137-3)

SCHRODER, WAYNE A.; HIRATA, THIAGO D.; LE, THUY T.; GARDNER, JOY; BOYLE, GLEN M.; ELLIS, JONATHAN; NAKAYAMA, ERI; PATHIRANA, DILAN; NAKAYA, HELDER I.; SUHRBIER, ANDREAS. SerpinB2 inhibits migration and promotes a resolution phase signature in large peritoneal macrophages. SCIENTIFIC REPORTS, v. 9, . Web of Science Citations: 0. (17/17345-1, 14/24162-2)

RUSSO, PEDRO S. T.; FERREIRA, GUSTAVO R.; CARDOZO, LUCAS E.; BUERGER, MATHEUS C.; ARIAS-CARRASCO, RAUL; MARUYAMA, SANDRA R.; HIRATA, THIAGO D. C.; LIMA, DIOGENES S.; PASSOS, FERNANDO M.; FUKUTANI, KIYOSHI F.; et al. CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses. BMC Bioinformatics, v. 19, . Web of Science Citations: 12. (13/08216-2, 15/20897-0, 12/19278-6, 15/25825-8, 14/24162-2, 17/05762-7, 14/19323-7)

ARIAS-CARRASCO, RAUL; VASQUEZ-MORAN, YESSENIA; NAKAYA, HELDER I.; MARACAJA-COUTINHO, VINICIUS. StructRNAfinder: an automated pipeline and web server for RNA families prediction. BMC Bioinformatics, v. 19, . Web of Science Citations: 3. (12/19278-6)

BLOHMKE, CHRISTOPH J.; HILL, JENNIFER; DARTON, THOMAS C.; CARVALHO-BURGER, MATHEUS; EUSTACE, ANDREW; JONES, CLAIRE; SCHREIBER, FERNANDA; GOODIER, MARTIN R.; DOUGAN, GORDON; NAKAYA, HELDER I.; et al. Induction of Cell Cycle and NK Cell Responses by Live-Attenuated Oral Vaccines against Typhoid Fever. FRONTIERS IN IMMUNOLOGY, v. 8, . Web of Science Citations: 4. (14/50828-8, 12/19278-6)

FERREIRA, GUSTAVO RODRIGUES; NAKAYA, HELDER IMOTO; COSTA, LUCIANO DA FONTOURA. Gene regulatory and signaling networks exhibit distinct topological distributions of motifs. Physical Review E, v. 97, n. 4, . Web of Science Citations: 0. (14/19323-7, 12/19278-6, 15/22308-2)

AMARAL, PAULO P.; LEONARDI, TOMMASO; HAN, NAMSHIK; VIRE, EMMANUELLE; GASCOIGNE, DENNIS K.; ARIAS-CARRASCO, RAUL; BUSCHER, MAGDALENA; PANDOLFINI, LUCA; ZHANG, ANDA; PLUCHINO, STEFANO; et al. Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci. Genome Biology, v. 19, . Web of Science Citations: 26. (14/50308-4)

MASTELIC-GAVILLET, BEATRIS; VONO, MARIA; GONZALEZ-DIAS, PATRICIA; FERREIRA, FREDERICO MORAES; CARDOZO, LUCAS; LAMBERT, PAUL-HENRI; NAKAYA, I, HELDER; SIEGRIST, CLAIRE-ANNE. Neonatal T Follicular Helper Cells Are Lodged in a Pre-T Follicular Helper Stage Favoring Innate Over Adaptive Germinal Center Responses. FRONTIERS IN IMMUNOLOGY, v. 10, . Web of Science Citations: 0. (12/19278-6, 17/50137-3)

SOARES-SCHANOSKI, ALESSANDRA; BAPTISTA CRUZ, NATALIA; DE CASTRO-JORGE, LUIZA ANTUNES; HOMEM DE CARVALHO, RENAN VILLANOVA; DOS SANTOS, CLIOMAR ALVES; DA ROS, NANCY; OLIVEIRA, URSULA; COSTA, DANUZA DUARTE; SIMOES DOS SANTOS, CECILIA LUIZA; CUNHA, MARIELTON DOS PASSOS; et al. Systems analysis of subjects acutely infected with the Chikungunya virus. PLOS PATHOGENS, v. 15, n. 6, . Web of Science Citations: 0. (13/08216-2, 17/50137-3, 15/25055-8, 12/19278-6, 13/07467-1, 16/08204-2)

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