CV Lattes
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Currently, a PhD student by the Interunits in Bioinformatics Graduate Program at University of Sao Paulo (2017). MSc in bioinformatics by the same graduate program (2016). The dissertation involved the computational analysis of prokaryotic viruses (bacteriophages) in metagenomic and metatransciptomic samples and isolated phages from composting. Was a visiting researcher (2016) at the Viral Bioinformatics Resource Center, in Victoria Canada. BSc in Biological sciences by the Biosciences Institute of the Universidade de São Paulo, Brazil (2013). During the course, has developed a component of automatic annotation of metabolic pathways (KEGG) for the EGene platform. Has experience in computational characterization of sequences, development of tools, in vrology and metagenomics. Has a good knowledge about programming in C and Perl, Python and basic JAVA. For for information, please refer to: https://sites.google.com/view/deyvid/ (Source: Lattes Curriculum)
- Metagenomic diagnostic test of viral pathogens through nanopore sequencing, AP.PIPE
Abstract
The advance of technology related to sequencing and new methodologies have enabled the use of innovative approaches to the metagenomic diagnosis of pathogens in humans, more importantly viral pathogens. Several works in the literature describe the use of Next Generation Sequencing (NGS) for the identification of viral pathogens that standard methods were not able to diagnose, as a case ...
- Metagenomic diagnostic test of viral pathogens through Nanopore sequencing, BP.TT
- Metagenomic diagnostic test of viral pathogens through nanopore sequencing, BP.PIPE
- Diversity analysis of bacteriophages associated to microbial community during the composting process, BP.MS
Abstract
Metagenomic studies have defined the structure and diversity of microbial communities in environmental samples. The data bring light to the uncultured microbial majority and help us to understand what are the organisms acting in complex processes. The thematic project in which this proposal is inserted (process 2011/50870-6) aims to characterize the diversity in different environmental ...
- Phage orthologous clusters: a database of phage information, BE.EP.MS
Abstract
Phages studies have been experiencing a resurgence of scientific interest due to recent evidences that show their importance in microbial ecology, carbon and other nutrients cycling and potential applications as anti-bacterial therapeutics in clinical, agricultural and food processing fields. They are also theorized as Nature reservoirs of genetic diversity, being responsible for new ge...
| 1 / 1 | Completed research grants |
| 3 / 3 | Completed scholarships in Brazil |
| 1 / 1 | Completed scholarships abroad |
| 5 / 5 | All research grants and scholarships |
| Associated processes | |
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
| Publications | 2 |
| Citations | 17 |
| Cit./Article | 8.5 |
| Data from Web of Science | |
AMGARTEN, DEYVID; MARTINS, LAYLA FARAGE; LOMBARDI, KAREN CRISTINA; ANTUNES, LUCIANA PRINCIPAL; SILVA DE SOUZA, ANA PAULA; NICASTRO, GIANLUCCA GONCALVES; KITAJIMA, ELLIOTT WATANABE; QUAGGIO, RONALDO BENTO; UPTON, CHRIS; SETUBAL, JOAO CARLOS; et al. Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages. BMC Genomics, v. 18, MAY 4 2017. Web of Science Citations: 6. (15/14334-3, 11/50870-6, 14/16450-8)
AMGARTEN, DEYVID; BRAGA, LUCAS P. P.; DA SILVA, ALINE M.; SETUBAL, JOAO C.. MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins. FRONTIERS IN GENETICS, v. 9, AUG 7 2018. Web of Science Citations: 11. (11/50870-6, 14/16450-8)