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Denis Jacob Machado

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Universidade de São Paulo (USP). Instituto de Biociências (IB)  (Institutional affiliation for the last research proposal)
Birthplace: Brazil

I am a postdoctoral researcher in bioinformatics at the University of North Carolina at Charlotte. My work focuses on comparative genomics, computer programming, and phylogenetics. My main interest is to bridge the gap between pure research and applied bioinformatics through scientific collaborations involving different biological models, ranging from frogs to viruses. To connect with me, please use For more details and a complete CV, visit (Source: Lattes Curriculum)

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Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (5)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

Data from Web of Science

GRANT, TARAN; RADA, MARCO; ANGANOY-CRIOLLO, MARVIN; BATISTA, ABEL; DIAS, PEDRO HENRIQUE; JECKEL, ADRIANA MORIGUCHI; MACHADO, DENIS JACOB; RUEDA-ALMONACID, JOSE VICENTE. Phylogenetic Systematics of Dart-Poison Frogs and their Relatives Revisited (Anura: Dendrobatoidea). South American Journal of Herpetology, v. 12, n. 1, p. S1-S90, . Web of Science Citations: 39. (15/11239-0, 12/10000-5, 13/20420-4, 13/05958-8, 16/09999-9, 15/18654-2, 08/50928-1)

MACHADO, DENIS JACOB. YBYRA facilitates comparison of large phylogenetic trees. BMC Bioinformatics, v. 16, . Web of Science Citations: 7. (12/10000-5, 09/13561-5, 13/05958-8)

MACHADO, DENIS JACOB; JANIES, DANIEL; BROUWER, CORY; GRANT, TARAN. A new strategy to infer circularity applied to four new complete frog mitogenomes. ECOLOGY AND EVOLUTION, v. 8, n. 8, p. 4011-4018, . Web of Science Citations: 3. (12/10000-5, 15/18654-2, 13/05958-8)

MACHADO, D. J.; LYRA, M. L.; GRANT, T.. Mitogenome assembly from genomic multiplex libraries: comparison of strategies and novel mitogenomes for five species of frogs. MOLECULAR ECOLOGY RESOURCES, v. 16, n. 3, p. 686-693, . Web of Science Citations: 8. (12/10000-5, 13/05958-8)

MACHADO, DENIS JACOB; CASTROVIEJO-FISHER, SANTIAGO; GRANT, TARAN. Evidence of absence treated as absence of evidence: The effects of variation in the number and distribution of gaps treated as missing data on the results of standard maximum likelihood analysis. Molecular Phylogenetics and Evolution, v. 154, . Web of Science Citations: 1. (12/10000-5, 15/18654-2, 18/15425-0)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

MACHADO, Denis Jacob. Acanthobothrium Blanchard, 1848: diversidade filogenética das linhagens parasitas de arraias de água doce. Dissertação (Mestrado) -  Instituto de Biociências.  Universidade de São Paulo (USP).  São Paulo.  (09/13561-5

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