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João Eduardo Ferreira

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Universidade de São Paulo (USP). Instituto de Matemática e Estatística (IME)  (Institutional affiliation for the last research proposal)
Birthplace: Brazil

Senior professor of Department of Computer Science at University of Sao Paulo. He has Bachelor degrees in physics - Option-Computational Physics, University of São Paulo (1988), Masters in Computational Physics, University of São Paulo (1991), PhD in Computational Physics, University of São Paulo (1996), and Pedagogy at the Federal University of São Carlos (1989). He has experience in Computer Science, with emphasis on Architecture of Computing Systems, working mainly in the following areas: data integration; modeling and implementation of processes and databases; scientific workflows; data warehouse, asynchronous transactions and systems based on live knowledge. Member of the Brazilian Computer Society (SBC), IEEE-CS and ACM. (Source: Lattes Curriculum)

Articles published in Pesquisa FAPESP Magazine about the researcher:
Fertile ground for artificial intelligence 
News published in Agência FAPESP Newsletter about the researcher
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Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (39)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

Publications37
Citations43
Cit./Article1.2
Data from Web of Science

ARAÚJO‚ L.V.; MALKOWSKI‚ S.; BRAGHETTO‚ K.R.; PASSOS-BUENO‚ M.R.; ZATZ‚ M.; PU‚ C.; FERREIRA‚ J.E.. A rigorous approach to facilitate and guarantee the correctness of the genetic testing management in human genome information systems. BMC Genomics, v. 12, n. Suppl 4, p. S13, . (06/00375-0)

FUJITA, ANDRE; LIRA, EDUARDO SILVA; SANTOS, SUZANA DE SIQUEIRA; BANDO, SILVIA YUMI; SOARES, GABRIELA ELEUTERIO; TAKAHASHI, DANIEL YASUMASA. A semi-parametric statistical test to compare complex networks. JOURNAL OF COMPLEX NETWORKS, v. 8, n. 2, . Web of Science Citations: 0. (18/17996-5, 18/21934-5, 15/21162-4, 15/01587-0)

RIBEIRO, ADELE H.; PAVAN SOLER, JULIA MARIA; HIRATA JR, ROBERTO. Variance-Preserving Estimation of Intensity Values Obtained From Omics Experiments. FRONTIERS IN GENETICS, v. 10, . Web of Science Citations: 0. (06/03227-2, 11/50761-2, 15/01587-0)

LIMA, WANIA REZENDE; MARTINS, DAVID CORREA; PARREIRA, KLEBER SIMONIO; SCARPELLI, PEDRO; DE MORAES, MIRIAM SANTOS; TOPALIS, PANTELIS; HASHIMOTO, RONALDO FUMIO; GARCIA, CELIA R. S.. Genome-wide analysis of the human malaria parasite Plasmodium falciparum transcription factor PfNF-YB shows interaction with a CCAAT motif. ONCOTARGET, v. 8, n. 69, p. 113987-114001, . Web of Science Citations: 1. (11/51295-5, 15/01587-0, 11/50761-2)

DRIEMEIER, CARLOS E.; LING, LIU Y.; YANCY-CABALLERO, DAISON; MANTELATTO, PAULO E.; DIAS, CARLOS S. B.; ARCHILHA, NATHALY L.. Location of water in fresh sugarcane bagasse observed by synchrotron X-ray microtomography. PLoS One, v. 13, n. 12, . Web of Science Citations: 2. (14/50884-5, 17/01330-5, 15/01587-0)

MACIEL CARDOSO, FELIPE; MELONI, SANDRO; SANTANCHE, ANDRE; MORENO, YAMIR. Topical Alignment in Online Social Systems. FRONTIERS IN PHYSICS, v. 7, . Web of Science Citations: 0. (15/01587-0)

MARCIO KATSUMI OIKAWA; MARCOS EDUARDO BOLELLI BROINIZI; ALEXANDRE DERMARGOS; HUGO AGUIRRE ARMELIN; JOÃO EDUARDO FERREIRA. GenFlow: generic flow for integration, management and analysis of molecular biology data. GENETICS AND MOLECULAR BIOLOGY, v. 27, n. 4, p. -, .

RAMOS, TAIANE COELHO; BALARDIN, JOANA BISOL; SATO, JOAO RICARDO; FUJITA, ANDRE. Abnormal Cortico-Cerebellar Functional Connectivity in Autism Spectrum Disorder. FRONTIERS IN SYSTEMS NEUROSCIENCE, v. 12, . Web of Science Citations: 4. (15/01587-0, 13/07375-0, 16/13422-9, 18/17996-5)

REIS, MARCELO S.; ESTRELA, GUSTAVO; FERREIRA, CARLOS EDUARDO; BARRERA, JUNIOR. featsel: A framework for benchmarking of feature selection algorithms and cost functions. SOFTWAREX, v. 6, p. 193-197, . Web of Science Citations: 1. (13/03447-6, 16/25959-7, 13/07467-1, 15/01587-0)

BANDIERA PAIVA, THALES; TERADA, ROUTO. Improving the Efficiency of a Reaction Attack on the QC-MDPC McEliece. IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, v. E101A, n. 10, p. 1676-1686, . Web of Science Citations: 0. (15/01587-0)

DRIEMEIER, CARLOS; LING, LIU YI; SANCHES, GUILHERME M.; PONTES, ANGELICA O.; GRAZIANO MAGALHAES, PAULO S.; FERREIRA, JOAO E.. A computational environment to support research in sugarcane agriculture. COMPUTERS AND ELECTRONICS IN AGRICULTURE, v. 130, p. 13-19, . Web of Science Citations: 7. (15/01587-0)

FUJITA, ANDRE; VIDAL, MACIEL C.; TAKAHASHI, DANIEL Y.. A Statistical Method to Distinguish Functional Brain Networks. FRONTIERS IN NEUROSCIENCE, v. 11, . Web of Science Citations: 8. (13/03447-6, 13/07375-0, 15/01587-0)

KINKER, GABRIELA SARTI; THOMAS, ANDREW MALTEZ; CARVALHO, VINICIUS JARDIM; LIMA, FELIPE PRATA; FUJITA, ANDRE. Deletion and low expression of NFKBIA are associated with poor prognosis in lower-grade glioma patients. SCIENTIFIC REPORTS, v. 6, . Web of Science Citations: 4. (15/01587-0, 14/09576-5, 13/03447-6, 14/27287-0, 15/01507-7)

GOYA, DENISE H.; NAKAMURA, DIONATHAN; TERADA, ROUTO. Certificateless Key Agreement Protocols under Strong Models. IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, v. E99A, n. 10, p. 1822-1832, . Web of Science Citations: 0. (08/06189-0, 15/01587-0)

MOREIRA, DANIEL A. M.; DELGADO, KARINA VALDIVIA; DE BARROS, LELIANE NUNES. Robust probabilistic planning with ilao. APPLIED INTELLIGENCE, v. 45, n. 3, p. 662-672, . Web of Science Citations: 0. (15/01587-0)

GUZMAN, GROVER E. C.; SATO, JOAO R.; VIDAL, MACIEL C.; FUJITA, ANDRE. Identification of alterations associated with age in the clustering structure of functional bra in networks. PLoS One, v. 13, n. 5, . Web of Science Citations: 1. (15/01587-0, 16/13422-9)

FELTRIN, ARTHUR SANT'ANNA; TAHIRA, ANA CAROLINA; SIMOES, SERGIO NERY; BRENTANI, HELENA; MARTINS, JR., DAVID CORREA. Assessment of complementarity of WGCNA and NERI results for identification of modules associated to schizophrenia spectrum disorders. PLoS One, v. 14, n. 1, . Web of Science Citations: 0. (11/04956-6, 11/50761-2, 14/00041-1, 14/10488-3, 15/01587-0)

ATASHPAZ-GARGARI, ESMAEIL; REIS, MARCELO S.; BRAGA-NETO, ULISSES M.; BARRERA, JUNIOR; DOUGHERTY, EDWARD R.. A fast Branch-and-Bound algorithm for U-curve feature selection. PATTERN RECOGNITION, v. 73, p. 172-188, . Web of Science Citations: 3. (15/01587-0, 13/07467-1)

MACUL FERREIRA DE BARROS, PEDRO; DO ROSARIO, MARIA CONCEICAO; SZEJKO, NATALIA; POLGA, NATALIA; REQUENA, GUARACI DE LIMA; RAVAGNANI, BEATRIZ; FATORI, DANIEL; BATISTUZZO, MARCELO CAMARGO; HOEXTER, MARCELO QUEIROZ; ROHDE, LUIS AUGUSTO; et al. Risk factors for obsessive-compulsive symptoms. Follow-up of a community-based youth cohort. EUROPEAN CHILD & ADOLESCENT PSYCHIATRY, v. 30, n. 1, . Web of Science Citations: 0. (15/01587-0, 08/57896-8)

ANDRES, IGNASI; DE BARROS, LELIANE NUNES; DELGADO, KARINA VALDIVIA. Human-aware Contingent Planning. FUNDAMENTA INFORMATICAE, v. 174, n. 1, p. 63-81, . Web of Science Citations: 0. (15/01587-0)

LIMA, WANIA REZENDE; MARTINS, DAVID CORREA; PARREIRA, KLEBER SIMONIO; SCARPELLI, PEDRO; DE MORAES, MIRIAM SANTOS; TOPALIS, PANTELIS; HASHIMOTO, RONALDO FUMIO; GARCIA, CELIA R. S.. Genome-wide analysis of the human malaria parasite Plasmodium falciparum transcription factor PfNF-YB shows interaction with a CCAAT motif. ONCOTARGET, v. 8, n. 69, p. 113987-114001, . Web of Science Citations: 1. (11/51295-5, 15/01587-0, 11/50761-2)

DRIEMEIER, CARLOS E.; LING, LIU Y.; YANCY-CABALLERO, DAISON; MANTELATTO, PAULO E.; DIAS, CARLOS S. B.; ARCHILHA, NATHALY L.. Location of water in fresh sugarcane bagasse observed by synchrotron X-ray microtomography. PLoS One, v. 13, n. 12, . Web of Science Citations: 2. (14/50884-5, 17/01330-5, 15/01587-0)

MACIEL CARDOSO, FELIPE; MELONI, SANDRO; SANTANCHE, ANDRE; MORENO, YAMIR. Topical Alignment in Online Social Systems. FRONTIERS IN PHYSICS, v. 7, . Web of Science Citations: 0. (15/01587-0)

MARCIO KATSUMI OIKAWA; MARCOS EDUARDO BOLELLI BROINIZI; ALEXANDRE DERMARGOS; HUGO AGUIRRE ARMELIN; JOÃO EDUARDO FERREIRA. GenFlow: generic flow for integration, management and analysis of molecular biology data. GENETICS AND MOLECULAR BIOLOGY, v. 27, n. 4, p. -, .

RAMOS, TAIANE COELHO; BALARDIN, JOANA BISOL; SATO, JOAO RICARDO; FUJITA, ANDRE. Abnormal Cortico-Cerebellar Functional Connectivity in Autism Spectrum Disorder. FRONTIERS IN SYSTEMS NEUROSCIENCE, v. 12, . Web of Science Citations: 4. (15/01587-0, 13/07375-0, 16/13422-9, 18/17996-5)

REIS, MARCELO S.; ESTRELA, GUSTAVO; FERREIRA, CARLOS EDUARDO; BARRERA, JUNIOR. featsel: A framework for benchmarking of feature selection algorithms and cost functions. SOFTWAREX, v. 6, p. 193-197, . Web of Science Citations: 1. (13/03447-6, 16/25959-7, 13/07467-1, 15/01587-0)

BANDIERA PAIVA, THALES; TERADA, ROUTO. Improving the Efficiency of a Reaction Attack on the QC-MDPC McEliece. IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUTER SCIENCES, v. E101A, n. 10, p. 1676-1686, . Web of Science Citations: 0. (15/01587-0)

SANCHES, GUILHERME M.; GRAZIANO MAGALHAES, PAULO S.; JUNQUEIRA FRANCO, HENRIQUE C.. Site-specific assessment of spatial and temporal variability of sugarcane yield related to soil attributes. Geoderma, v. 334, p. 90-98, . Web of Science Citations: 1. (08/09265-9, 13/50942-2, 15/01587-0, 14/14965-0)

SILVA REIS, WILLY ARTHUR; DE BARROS, LELIANE NUNES; DELGADO, KARINA VALDIVIA. Robust topological policy iteration for infinite horizon bounded Markov Decision Processes. INTERNATIONAL JOURNAL OF APPROXIMATE REASONING, v. 105, p. 287-304, . Web of Science Citations: 0. (15/01587-0)

FUJITA, ANDRE; TAKAHASHI, DANIEL YASUMASA; BALARDIN, JOANA BISOL; VIDAL, MACIEL CALEBE; SATO, JOAO RICARDO. Correlation between graphs with an application to brain network analysis. COMPUTATIONAL STATISTICS & DATA ANALYSIS, v. 109, p. 76-92, . Web of Science Citations: 0. (13/10498-6, 16/13422-9, 13/00506-1, 15/01587-0)

SILVA, DENNIS J.; ALVES, WONDER A. L.; HASHIMOTO, RONALDO FUMIO. Incremental bit-quads count in component trees: Theory, algorithms, and optimization. PATTERN RECOGNITION LETTERS, v. 129, p. 33-40, . Web of Science Citations: 0. (18/15652-7, 15/01587-0)

CARASTAN-SANTOS, DANILO; MARTINS-, JR., DAVID C.; SONG, SIANG W.; ROZANTE, LUIZ C. S.; DE CAMARGO, RAPHAEL Y.. A hybrid CPU-GPU-MIC algorithm for minimal hitting set enumeration. CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, v. 31, n. 18, SI, . Web of Science Citations: 1. (15/01587-0, 15/24485-9, 13/26644-1, 14/50937-1)

FUJITA, ANDRE; TAKAHASHI, DANIEL YASUMASA; BALARDIN, JOANA BISOL; VIDAL, MACIEL CALEBE; SATO, JOAO RICARDO. Correlation between graphs with an application to brain network analysis. COMPUTATIONAL STATISTICS & DATA ANALYSIS, v. 109, p. 76-92, . Web of Science Citations: 0. (13/10498-6, 16/13422-9, 13/00506-1, 15/01587-0)

JACOMINI, RICARDO DE SOUZA; MARTINS, JR., DAVID CORREA; DA SILVA, FELIPE LENO; REALI COSTA, ANNA HELENA. GeNICE: A Novel Framework for Gene Network Inference by Clustering, Exhaustive Search, and Multivariate Analysis. JOURNAL OF COMPUTATIONAL BIOLOGY, v. 24, n. 8, p. 809-830, . Web of Science Citations: 0. (16/21047-3, 11/50761-2, 15/16310-4, 15/01587-0)

ARAÚJO‚ L.V.; MALKOWSKI‚ S.; BRAGHETTO‚ K.R.; PASSOS-BUENO‚ M.R.; ZATZ‚ M.; PU‚ C.; FERREIRA‚ J.E.. A rigorous approach to facilitate and guarantee the correctness of the genetic testing management in human genome information systems. BMC Genomics, v. 12, n. Suppl 4, p. S13, . (06/00375-0)

MEKKAOUI, CHOUKRI; METELLUS, PHILIPPE; KOSTIS, WILLIAM J.; MARTUZZI, ROBERTO; PEREIRA, FABRICIO R.; BEREGI, JEAN-PAUL; REESE, TIMOTHY G.; CONSTABLE, TODD R.; JACKOWSKI, MARCEL P.. Diffusion Tensor Imaging in Patients with Glioblastoma Multiforme Using the Supertoroidal Model. PLoS One, v. 11, n. 1, . Web of Science Citations: 3. (15/01587-0)

SCHWERZ, ANDRE LUIS; LIBERATO, RAFAEL; PU, CALTON; FERREIRA, JOAO EDUARDO. Robust and Reliable Process-Aware Information Systems. IEEE TRANSACTIONS ON SERVICES COMPUTING, v. 14, n. 3, p. 820-833, . Web of Science Citations: 0. (15/01587-0)

FUJITA, ANDRE; LIRA, EDUARDO SILVA; SANTOS, SUZANA DE SIQUEIRA; BANDO, SILVIA YUMI; SOARES, GABRIELA ELEUTERIO; TAKAHASHI, DANIEL YASUMASA. A semi-parametric statistical test to compare complex networks. JOURNAL OF COMPLEX NETWORKS, v. 8, n. 2, . Web of Science Citations: 0. (18/17996-5, 18/21934-5, 15/21162-4, 15/01587-0)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

OIKAWA, Marcio Katsumi. Integração para dados e aplicações em Biologia Molecular Computacional.  100 f. Dissertação (Mestrado) -  Instituto de Matemática e Estatística.  Universidade de São Paulo (USP).  São Paulo.  (00/10062-3

BRAGHETTO, Kelly Rosa. Técnicas de modelagem para a análise de desempenho de processos de negócio. Tese (Doutorado) -  Instituto de Matemática e Estatística.  Universidade de São Paulo (USP).  São Paulo.  (07/51616-0

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