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Ney Lemke

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Universidade Estadual Paulista (UNESP). Campus de São Paulo. Reitoria  (Institutional affiliation for the last research proposal)
Birthplace: Brazil

Ney Lemke was born in Porto Alegre, Brazil, in 1969. He received the Physics degree and the Ph.D. degree from the Universidade Federal do Rio Grande do Sul in 1990 and 1997, respectively. He made his Sandwich-Phd under the supervision of Ian A. Campbell at Université Paris Sud at Orsay -France in 1995. Since 2005, Lemke serves as full Professor at Instituto de Biociências-Unesp. Since 2007, Lemke is Member of Núcleo de Computação Científica at Unesp where he is in charge of defining and implementing policies for helping users to access GridUnesp facilities. He participates on General Biology and Genetics graduate programs at Unesp. He is president of the Information Technology Committee at Instituto de Biociências ? Unesp. He is Member of the Brazilian Physical Society and Brazilian Bioinformatics and Computational Biology Society and a Former Junior Associate at ICTP. He is editor of ISRN Bioinformatics. His research interests include Bioinformatics, Complex Networks, High Performance Computing and Complex Systems. (Source: Lattes Curriculum)

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Scholarships abroad
FAPESP support in numbers * Updated October 12, 2019
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Keywords used by the researcher
Scientific publications resulting from Research Grants and Scholarships under the grantee's responsibility (20)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

Publications17
Citations336
Cit./Article19.8
Data from Web of Science

LEMKE, N.; CAMPBELL, IAN A.. Stretched-exponential behavior and random walks on diluted hypercubic lattices. Physical Review E, v. 84, n. 4, 1, . Web of Science Citations: 4. (09/10382-2)

VALENTE, GUILHERME T.; ACENCIO, MARCIO L.; MARTINS, CESAR; LEMKE, NEY. The Development of a Universal In Silico Predictor of Protein-Protein Interactions. PLoS One, v. 8, n. 5, . Web of Science Citations: 17. (09/05234-4, 13/02018-4)

BOVOLENTA, LUIZ A.; ACENCIO, MARCIO L.; LEMKE, NEY. HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions. BMC Genomics, v. 13, . Web of Science Citations: 114. (10/20684-3, 09/10382-2)

CAMILO, ESTHER; BOVOLENTA, LUIZ A.; ACENCIO, MARCIO L.; RYBARCZYK-FILHO, JOSE L.; CASTRO, MAURO A. A.; MOREIRA, JOSE C. F.; LEMKE, NEY. GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks. Bioinformatics, v. 29, n. 19, p. 2505-2506, . Web of Science Citations: 3. (10/20684-3, 12/13450-1, 13/02018-4, 12/00741-8)

POLLO-OLIVEIRA, LETICIA; POST, HARM; ACENCIO, MARCIO LUIS; LEMKE, NEY; VAN DEN TOORN, HENK; TRAGANTE, VINICIUS; HECK, ALBERT J. R.; ALTELAAR, A. F. MAARTEN; YATSUDA, ANA PATRICIA. Unravelling the Neospora caninum secretome through the secreted fraction (ESA) and quantification of the discharged tachyzoite using high-resolution mass spectrometry-based proteomics. PARASITES & VECTORS, v. 6, . Web of Science Citations: 9. (10/20684-3, 13/02018-4)

ACENCIO, MARCIO L.; LEMKE, NEY. Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information. BMC Bioinformatics, v. 10, . Web of Science Citations: 93. (07/02827-9, 07/01213-7)

SCHOENWALD, SUZANA V.; CARVALHO, DIEGO Z.; DE SANTA-HELENA, EMERSON L.; LEMKE, NEY; GERHARDT, GUENTHER J. L.. Topography-specific spindle frequency changes in Obstructive Sleep Apnea. BMC NEUROSCIENCE, v. 13, . Web of Science Citations: 22. (09/10382-2)

COSTA, PEDRO RAFAEL; ACENCIO, MARCIO LUIS; LEMKE, NEY. Cooperative RNA Polymerase Molecules Behavior on a Stochastic Sequence-Dependent Model for Transcription Elongation. PLoS One, v. 8, n. 2, . Web of Science Citations: 5. (10/03338-4, 10/20684-3, 09/10382-2)

COSTA‚ P.R.; ACENCIO‚ M.L.; LEMKE‚ N.. A machine learning approach for genome-wide prediction of morbid and druggable human genes based on systems-level data. BMC Genomics, v. 11, n. Suppl 5, p. S9, . (07/02827-9, 07/01213-7, 07/08466-8)

CECHIN‚ A.; SINIGAGLIA‚ M.; LEMKE‚ N.; ECHEVERRIGARAY‚ S.; CABRERA‚ O.; PEREIRA‚ G.; MOMBACH‚ J.. Cupin: A candidate molecular structure for the Nep1-like protein family. BMC PLANT BIOLOGY, v. 8, n. 1, p. 50, . (07/02827-9)

CECHIN, ADELMO L.; SINIGAGLIA, MARIALVA; MOMBACH, JOSE C. M.; ECHEVERRIGARAY, SERGIO; LEMKE, NEY; CABRERA, ODALYS G.; PEREIRA, GONCALO A. G.; MEDRANO, FRANCISCO JAVIER. Can Nep1-like proteins form oligomers?. PLANT SIGNALING & BEHAVIOR, v. 3, n. 10, p. 906-907, . Web of Science Citations: 1. (07/02827-9)

BOVOLENTA‚ L.; ACENCIO‚ M.; LEMKE‚ N.. The development of an open-access database for human transcriptional regulation interactions. BMC Bioinformatics, v. 12, n. Suppl 11, p. A10, . (09/10382-2, 10/20684-3)

ACENCIO, MARCIO LUIS; BOVOLENTA, LUIZ AUGUSTO; CAMILO, ESTHER; LEMKE, NEY. Prediction of Oncogenic Interactions and Cancer-Related Signaling Networks Based on Network Topology. PLoS One, v. 8, n. 10, . Web of Science Citations: 5. (10/20684-3, 12/13450-1, 13/02018-4, 12/00741-8)

ZHANG, XUE; ACENCIO, MARCIO LUIS; LEMKE, NEY. Predicting Essential Genes and Proteins Based on Machine Learning and Network Topological Features: A Comprehensive Review. FRONTIERS IN PHYSIOLOGY, v. 7, . Web of Science Citations: 21. (13/02018-4)

PINHAL, DANILLO; BOVOLENTA, LUIZ A.; MOXON, SIMON; OLIVEIRA, ARTHUR C.; NACHTIGALL, PEDRO G.; ACENCIO, MARCIO L.; PATTON, JAMES G.; HILSDORF, ALEXANDRE W. S.; LEMKE, NEY; MARTINS, CESAR. Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs' transcription, sex-biased arm switching and increasing complexity of expression throughout development. SCIENTIFIC REPORTS, v. 8, . Web of Science Citations: 3. (15/16661-1, 12/13450-1, 12/15589-7, 15/19176-7, 11/06465-0, 13/06864-7)

GERALDO, MARCOS TADEU; SEKIJIMA TAKEDA, AGNES ALESSANDRA; KIMUS BRAZ, ANTONIO SERGIO; LEMKE, NEY. Bending-Twisting Motions and Main Interactions in Nucleoplasmin Nuclear Import. PLoS One, v. 11, n. 6, . Web of Science Citations: 2. (14/21976-9, 12/19447-2)

OLIVEIRA, ARTHUR C.; BOVOLENTA, LUIZ A.; NACHTIGALL, PEDRO G.; HERKENHOFF, MARCOS E.; LEMKE, NEY; PINHAL, DANILLO. Combining Results from Distinct MicroRNA Target Prediction Tools Enhances the Performance of Analyses. FRONTIERS IN GENETICS, v. 8, . Web of Science Citations: 7. (15/19176-7, 14/03062-0, 12/13450-1, 13/06864-7)

FERNANDES DE SOUZA, RAFAEL TOLEDO; LEWCZUK GERHARDT, GUENTHER JOHANNES; SCHOENWALD, SUZANA VEIGA; RYBARCZYK-FILHO, JOSE LUIZ; LEMKE, NEY. Synchronization and Propagation of Global Sleep Spindles. PLoS One, v. 11, n. 3, . Web of Science Citations: 7. (12/22413-2, 13/02018-4)

CARVALHO, DIEGO Z.; GERHARDT, GUENTHER J. L.; DELLAGUSTIN, GUILHERME; DE SANTA-HELENA, EMERSON L.; LEMKE, NEY; SEGAL, ALAN Z.; SCHOENWALD, SUZANA V.. Loss of sleep spindle frequency deceleration in Obstructive Sleep Apnea. CLINICAL NEUROPHYSIOLOGY, v. 125, n. 2, p. 306-312, . Web of Science Citations: 15. (09/10382-2)

KANDOI, GAURAV; ACENCIO, MARCIO L.; LEMKE, NEY. Prediction of Druggable Proteins Using Machine Learning and Systems Biology: A Mini-Review. FRONTIERS IN PHYSIOLOGY, v. 6, . Web of Science Citations: 8. (13/02018-4)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

COSTA, Pedro Rafael. Influência da dinâmica transcricional no dobramento da molécula de RNA. 2016. Tese (Doutorado) – . Universidade Estadual Paulista "Júlio de Mesquita Filho" Instituto de Biociências (Campus de Botucatu). (12/19377-4)

BOVOLENTA, Luiz Augusto. Análise exploratória em larga escala de microRNAs expressos em tilápia do Nilo utilizando ferramentas de bioinformática. 2016. Tese (Doutorado) – . Universidade Estadual Paulista "Júlio de Mesquita Filho" Instituto de Biociências (Campus de Botucatu). (12/13450-1)

GERALDO, Marcos Tadeu. Caracterização in silico dos mecanismos de interação entre sequências de localização nuclear e Importina-α. 2016. Tese (Doutorado) – . Universidade Estadual Paulista "Júlio de Mesquita Filho" Instituto de Biociências (Campus de Botucatu). (12/19447-2)

SOUZA, Rafael Toledo Fernandes de. Dinâmica de grafoelementos do sono e seus impactos na neurofisiologia de pacientes com apneia obstrutiva através de sinais de eletroencefalografia. 2016. Tese (Doutorado) – . Universidade Estadual Paulista "Júlio de Mesquita Filho" Instituto de Biociências (Campus de Botucatu). (12/22413-2)

NAKAJIMA, Rafael Takahiro. Transcrição cooperativa de genes ribossomais em Escherichia coli usando um modelo estocástico e dependente de sequência. 2015. 45f. Dissertação (Mestrado) - . Universidade Estadual Paulista "Júlio de Mesquita Filho" Instituto de Biociências (Campus de Botucatu). (13/06683-2)

ACENCIO, Marcio Luis. Construção e análise da rede integrada de interações entre genes humanos envolvida com a regulação da transição G1/S do ciclo celular pela adesão à matriz extracelular. 2011. 119f. Tese (Doutorado) – . Universidade Estadual Paulista "Júlio de Mesquita Filho" Instituto de Biociências (Campus de Botucatu). Botucatu. (07/01213-7)

COSTA, Pedro Rafael. Modelo cinético estocástico para a transcrição considerando colisões entre as moléculas de RNA polimerase. 2012. 59f. Dissertação (Mestrado) - Instituto de Biociências de Botucatu. Universidade Estadual Paulista "Júlio de Mesquita Filho". (10/03338-4)

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