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(Reference retrieved automatically from Web of Science through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

Identifying plant species using architectural features in leaf microscopy images

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Author(s):
Florindo, Joao Batista [1] ; Bruno, Odemir Martinez [1] ; Rossatto, Davi Rodrigo [2] ; Kolb, Rosana Marta [3] ; Cecilia Gomez, Maria [4] ; Landini, Gabriel [5]
Total Authors: 6
Affiliation:
[1] Univ Sao Paulo, Sao Carlos Inst Phys, POB 369, BR-13560970 Sao Paulo - Brazil
[2] Univ Estadual Paulista, Fac Agrarian & Vet Sci, Dept Biol, Sao Paulo - Brazil
[3] Univ Estadual Paulista, UNESP, Fac Sci & Letters, Dept Biol Sci, Sao Paulo - Brazil
[4] Natl Univ Littoral, Fac Biochem & Biol Sci, Dept Phys, Santa Fe, Santa Fe - Argentina
[5] Univ Birmingham, Sch Dent, Oral Pathol Unit, Birmingham, W Midlands - England
Total Affiliations: 5
Document type: Journal article
Source: BOTANY; v. 94, n. 1, p. 15-21, JAN 2016.
Web of Science Citations: 0
Abstract

This work proposes an analytical method to identify plant species based on microscopy images of the midrib cross-section of leaves. Unlike previous shape-based approaches based on the individual shape of external contours and cells, an architectural analysis is proposed, where the midrib is semi-automatically segmented and partitioned into histologically relevant structures composed of layers of cells and vascular structures. Using a sequence of morphological operations, a set of geometrical measures from the cells in each layer is extracted to produce a vector of features for species categorization. The method applied to a database containing 10 species of plants from the Brazilian flora achieved a success rate of 91.7%, outperforming other classical shape-based approaches published in the literature. (AU)

FAPESP's process: 11/01523-1 - Computer vision methods applied to the identification and analysis of plants
Grantee:Odemir Martinez Bruno
Support type: Regular Research Grants
FAPESP's process: 13/22205-3 - Tissue spatial organization and fractal analyses for automated plant taxonomy
Grantee:Joao Batista Florindo
Support type: Scholarships abroad - Research Internship - Post-doctor
FAPESP's process: 11/23112-3 - Leaf anatomy of plants from different vegetation formations
Grantee:Rosana Marta Kolb
Support type: Regular Research Grants