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(Reference retrieved automatically from Web of Science through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

Molecular systematics of teioid lizards (Teioidea/Gymnophthalmoidea: Squamata) based on the analysis of 48 loci under tree-alignment and similarity-alignment

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Goicoechea, Noemi ; Frost, Darrel R. ; De la Riva, Ignacio ; Pellegrino, Katia C. M. ; Sites, Jr., Jack ; Rodrigues, Miguel T. ; Padial, Jose M.
Total Authors: 7
Document type: Journal article
Source: CLADISTICS; v. 32, n. 6, p. 624-671, DEC 2016.
Web of Science Citations: 34

We infer phylogenetic relationships within Teioidea, a superfamily of Nearctic and Neotropical lizards, using nucleotide sequences. Phylogenetic analyses relied on parsimony under tree-alignment and similarity-alignment, with length variation (i.e. gaps) treated as evidence and as absence of evidence, and maximum-likelihood under similarity-alignment with gaps as absence of evidence. All analyses produced almost completely resolved trees despite 86% of missing data. Tree-alignment produced the shortest trees, the strict consensus of which is more similar to the maximum-likelihood tree than to any of the other parsimony trees, in terms of both number of clades shared, parsimony cost and likelihood scores. Comparisons of tree costs suggest that the pattern of indels inferred by similarity-alignment drove parsimony analyses on similarity-aligned sequences away from more optimal solutions. All analyses agree in a majority of clades, although they differ from each other in unique ways, suggesting that neither the criterion of optimality, alignment nor treatment of indels alone can explain all differences. Parsimony rejects the monophyly of Gymnophthalmidae due to the position of Alopoglossinae relative to Teiidae, whereas support of Gymnophthalmidae by maximum-likelihood was low. We address various nomenclatural issues, including Gymnophthalmidae Fitzinger, 1826 being an older name than Teiidae Gray, 1827. We recognize three families in the arrangement Alopoglossidae+(Teiidae+Gymnophthalmidae). Within Gymnophthalmidae we recognize Cercosaurinae, Gymnophthalminae, Rhachisaurinae and Riolaminae in the relationship Cercosaurinae+(Rhachisaurinae+(Riolaminae+Gymnophthalminae)). Cercosaurinae is composed of three tribesBachiini, Cercosaurini and Ecpleopodiniand Gymnophthalminae is composed of threeGymnophthalmini, Heterodactylini and Iphisini. Within Teiidae we retain the currently recognized three subfamilies in the arrangement: Callopistinae+(Tupinambinae+Teiinae). We also propose several genus-level changes to restore the monophyly of taxa. (AU)

FAPESP's process: 11/50146-6 - Comparative phylogeography, phylogeny, paleoclimate modeling, and taxonomy of neotropical reptiles and amphibians
Grantee:Miguel Trefaut Urbano Rodrigues
Support type: BIOTA-FAPESP Program - Thematic Grants
FAPESP's process: 03/10335-8 - Systematics and evolution of the herpetological fauna from Neotropical areas
Grantee:Miguel Trefaut Urbano Rodrigues
Support type: Research Projects - Thematic Grants
FAPESP's process: 13/50297-0 - Dimensions US-BIOTA São Paulo: a multidisciplinary framework for biodiversity prediction in the Brazilian Atlantic forest hotspot
Grantee:Cristina Yumi Miyaki
Support type: BIOTA-FAPESP Program - Thematic Grants