Estatística de redes: teoria, métodos e aplicações

• Processo: 18/21934-5
• Modalidade de apoio: Auxílio à Pesquisa - Temático
• Vigência: 01 de maio de 2019 - 30 de abril de 2024
• Área do conhecimento: Ciências Exatas e da Terra - Ciência da Computação - Metodologia e Técnicas da Computação
• Pesquisador responsável: André Fujita
• Beneficiário: André Fujita
• Instituição Sede: Instituto de Matemática e Estatística (IME). Universidade de São Paulo (USP). São Paulo , SP, Brasil
• Pesquisadores principais: Helder Takashi Imoto Nakaya ; João Ricardo Sato
• Pesquisadores associados: Abner Cardoso Rodrigues Neto ; Alexandre Alarcon Steiner ; Alexandre Galvão Patriota ; Andrea Parolin Jackowski ; Ariel Mariano Silber ; Carlos Alberto Moreira Filho ; Carlos Eduardo Ferreira ; Claudinei Eduardo Biazoli Junior ; Cristina Gomes Fernandes ; Daniel Yasumasa Takahashi ; David Corrêa Martins Junior ; Elisa Harumi Kozasa ; Fabricio Martins Lopes ; Itamar de Souza Santos ; Joana Bisol Balardin ; João Paulo Papa ; José Carlos Farias Alves Filho ; Mari Cleide Sogayar ; Patricia Severino ; Rodrigo Affonseca Bressan ; Ronaldo Fumio Hashimoto ; Silvia Yumi Bando Takahara ; Thiago Mattar Cunha
• Auxílios(s) vinculado(s): 19/22845-9 - Abordagens computacionais com o objetivo de explorar interações intra e inter espécies e seu papel em todos os domínios da vida, AP.R SPRINT
• Bolsa(s) vinculada(s): 23/13418-5 - Inferências sobre o acoplamento de redes cerebrais intersujeitos em crianças durante tarefas cooperativas: um estudo de espectroscopia no infravermelho próximo, BP.TT; 23/12217-6 - A relevância de canais de curta distância no desenvolvimento de espectroscopia funcional no infravermelho próximo: avaliação em redes funcionais, BP.TT; 21/10289-4 - Implementação de algoritmos eficientes para estatística de redes, BP.IC; + mais bolsas vinculadas 20/13595-6 - Análise das evidências cognitivas, comportamentais e de neuroimagem para a teoria do cérebro masculino extremo no autismo, BP.MS; 19/26284-1 - Criando um grafo de conhecimento biológico através do Wikidata com foco no projeto Human Cell Atlas, BP.DR; 20/02415-7 - StatGraph 2.0 e um massivo curso online gratuito (MOOC), BP.PD; 19/17907-5 - Inferências de conexões intercerebrais com utilização de espectroscopia de infravermelho próximo: investigação de interações adulto-criança, BP.DD; 19/16418-0 - Meta-análise de redes gênicas associadas às infecções virais humanas, BP.DD; 19/14879-0 - Investigação dos correlatos neurais da leitura e escrita em crianças: um estudo baseado em fNIRS, BP.IC; 19/12098-1 - Análise de dados de imagens ressonância magnética funcional de pacientes diagnosticados com Esquizofrenia, BP.IC - menos bolsas vinculadas
• Assunto(s): Aprendizado computacional Biologia computacional Neurociências Big data Biologia de sistemas Estatística computacional
• Palavra(s)-Chave do Pesquisador: Aprendizagem de Maquina | big data | bioinformática | biologia de sistemas | estatística computacional | Neurociência | Estatística computacional

Resumo

A importância da Estatística nas ciências naturais é inquestionável. A Estatística é essencial para analisar dados de forma apropriada e também obter conclusões confiáveis. No entanto, pouco se é conhecido sobre métodos estatísticos formais em grafos e suas propriedades teóricas mesmo com o aumento no número de artigos relacionados com redes do mundo real (por ex., redes funcionais de cérebro, redes de interação proteína-proteína, redes de interação social). Redes são geralmente analisadas usando algoritmos computacionais baseados na teoria do grafos, como cálculo de medidas de centralidades (importância relativa dos vértices e/ou arestas) ou identificação de padrões estruturais (motivos). O principal problema com esta abordagem é o fato de redes do mundo real apresentarem flutuações intrínsecas (ruído aleatório) que os algoritmos tradicionais não levam em consideração. Portanto, métodos com perspectiva estatística podem auxiliar e complementar essas análises. A proposta deste projeto é de desenvolver desde a teoria e métodos estatístico-computacionais para grafos como também aplica-los em dados do mundo real, como as advindas da biologia molecular, neuroimagem e dados cardíacos. O desenvolvimento deste projeto será essencial para obter novos insights, solidificar a cooperação entre os pesquisadores e melhorar a qualidade na pesquisa dos grupos envolvidos. A longo prazo, pretendemos consolidar a área de Estatística de Redes, formar grupos de pesquisadores altamente qualificados, e finalmente, construir um Centro de Estatística de Redes no Brasil. Este centro atuará tanto no desenvolvimento teórico e de novas metodologias quanto nas aplicações em problemas das ciências da saúde. (AU)

Publicações científicas

(83)

(Referências obtidas automaticamente do Web of Science e do SciELO, por meio da informação sobre o financiamento pela FAPESP e o número do processo correspondente, incluída na publicação pelos autores)

SUGI AFONSO, LUIS CLAUDIO; RODRIGUES, DOUGLAS; PAPA, JOAO PAULO. Nature-inspired optimum-path forest. EVOLUTIONARY INTELLIGENCE, SEP 2021. (17/25908-6, 18/21934-5, 14/12236-1, 13/07375-0, 19/07665-4)

AMBRIOLA OKU, AMANDA YUMI; ZIMEO MORAIS, GUILHERME AUGUSTO; ARANTES BUENO, ANA PAULA; FUJITA, ANDRE; SATO, JOAO RICARDO. Potential Confounders in the Analysis of Brazilian Adolescent's Health: A Combination of Machine Learning and Graph Theory. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, v. 17, n. 1, JAN 2020. (19/17907-5, 18/21934-5, 16/19376-9, 18/04654-9)

RODRIGUES, JULIA DE SOUZA; RIBEIRO, FERNANDA LENITA; SATO, JOAO RICARDO; MESQUITA, RICKSON COELHO; BIAZOLI JUNIOR, CLAUDINEI EDUARDO. Identifying individuals using fNIRS-based cortical connectomes. BIOMEDICAL OPTICS EXPRESS, v. 10, n. 6, p. 2889-2897, JUN 1 2019. (18/21934-5)

PINAYA, WALTER H. L.; SCARPAZZA, CRISTINA; GARCIA-DIAS, RAFAEL; VIEIRA, SANDRA; BAECKER, LEA; DA COSTA, PEDRO F.; REDOLFI, ALBERTO; FRISONI, GIOVANNI B.; PIEVANI, MICHELA; CALHOUN, VINCE D.; et al. sing normative modelling to detect disease progression in mild cognitive impairment and Alzheimer's disease in a cross-sectional multi-cohort stud. SCIENTIFIC REPORTS, v. 11, n. 1, AUG 3 2021. (18/21934-5, 18/04654-9)

PERON, J. P. S.; NAKAYA, I, H.; SCHLINDWEIN, M. A. M.; GONCALVES, M. V. M.. COVID-19 Pandemic and Dysbiosis: Can the Ivermectin Hysteria Lead to an Increase of Autoimmune Neuroinflammatory Diseases?. CRITICAL REVIEWS IN IMMUNOLOGY, v. 40, n. 6, SI, p. 537-542, 2020. (17/22504-1, 18/14933-2, 12/19278-6, 13/08216-2, 18/21934-5, 19/06372-3, 17/21363-5)

SATO, JOAO RICARDO; BIAZOLI JUNIOR, CLAUDINEI EDUARDO; MEDEIROS DE ARAUJO, ELIDIANNE LAYANNE; RODRIGUES, JULIA DE SOUZA; ANDRADE, SUELLEN MARINHO. A guide for the use of fNIRS in microcephaly associated to congenital Zika virus infection. SCIENTIFIC REPORTS, v. 11, n. 1, SEP 29 2021. (18/04654-9, 18/21934-5, 20/13425-3)

SANTOS, SUZANA DE SIQUEIRA; FUJITA, ANDRE; MATIAS, CATHERINE. Spectral density of random graphs: convergence properties and application in model fitting. JOURNAL OF COMPLEX NETWORKS, v. 9, n. 6, p. 27-pg., 2021-10-20. (18/21934-5, 19/22845-9, 17/12074-0, 20/08343-8, 15/21162-4)

AGUIAR, RENATO S.; POHL, FABIO; MORAIS, GUILHERME L.; NOGUEIRA, FABIO C. S.; DE CARVALHO, JOSEANE B.; GUIDA, LETICIA; ARGE, LUIS W. P.; MELO, ADRIANA; MOREIRA, MARIA E. L.; CUNHA, DANIELA P.; et al. Molecular alterations in the extracellular matrix in the brains of newborns with congenital Zika syndrome. Science Signaling, v. 13, n. 635, JUN 9 2020. (13/08216-2, 12/19278-6, 18/21934-5, 17/50137-3, 18/14933-2)

BUENO, A. P. A.; SATO, J. R.; HORNBERGER, M.. Eye tracking - The overlooked method to measure cognition in neurodegeneration?. Neuropsychologia, v. 133, OCT 2019. (18/21934-5, 17/23020-8, 16/19376-9, 18/04654-9)

BARRETO, CANDIDA; BRUNERI, GUILHERME DE ALBUQUERQUE; BROCKINGTON, GUILHERME; AYAZ, HASAN; SATO, JOAO RICARDO. A New Statistical Approach for fNIRS Hyperscanning to Predict Brain Activity of Preschoolers' Using Teacher's. FRONTIERS IN HUMAN NEUROSCIENCE, v. 15, MAY 7 2021. (18/21934-5, 18/04654-9)

RODER, MATEUS; PASSOS, LEANDRO APARECIDO; DE ROSA, GUSTAVO H.; DE ALBUQUERQUE, VICTOR HUGO C.; PAPA, JOAO PAULO. Reinforcing learning in Deep Belief Networks through nature-inspired optimization. APPLIED SOFT COMPUTING, v. 108, SEP 2021. (19/07825-1, 18/21934-5, 17/25908-6, 19/07665-4, 19/02205-5, 13/07375-0, 14/12236-1)

JEAN PIERRE SCHATZMANN PERON; HELDER NAKAYA. Susceptibility of the Elderly to SARS-CoV-2 Infection: ACE-2 Overexpression, Shedding, and Antibody-dependent Enhancement (ADE). Clinics, v. 75, 2020-05-15. (13/08216-2, 17/50137-3, 17/22504-1, 18/14933-2, 18/21934-5, 12/19278-6, 17/26170-0)

GUZMAN, GROVER E. C.; STADLER, PETER F.; FUJITA, ANDRE. Efficient Laplacian spectral density computations for networks with arbitrary degree distributions. NETWORK SCIENCE, v. 9, n. 3, p. 312-327, SEP 2021. (18/21934-5)

WANG, JAQUELINE YU TING; WHITTLE, MARTIN R.; PUGA, RENATO DAVID; YAMBARTSEV, ANATOLY; FUJITA, ANDRE; NAKAYA, HELDER I.. Noninvasive prenatal paternity determination using microhaplotypes: a pilot study. BMC MEDICAL GENOMICS, v. 13, n. 1, OCT 23 2020. (12/19278-6, 18/21934-5)

LUSCHER-DIAS, THOMAZ; CONCEICAO, IZABELA MAMEDE; SCHUCH, VIVIANE; MARACAJA-COUTINHO, VINICIUS; AMARAL, PAULO P.; NAKAYA, HELDER I.; HON, CC. Long non-coding RNAs associated with infection and vaccine-induced immunity. NON-CODING GENOME, v. 65, n. 4, p. 13-pg., 2021-01-01. (18/14933-2, 13/08216-2, 20/04836-0, 17/27131-9, 18/21934-5)

REBELLO, KEILA; MOURA, LUCIANA MONTEIRO; ARANTES BUENO, ANA PAULA; PICON, FELIPE ALMEIDA; PAN, PEDRO MARIO; GADELHA, ARY; MIGUEL, EURIPEDES CONSTATINO; BRESSAN, RODRIGO AFFONSECA; ROHDE, LUIS AUGUSTO; SATO, JOAO RICARDO. Associations between Family Functioning and Maternal Behavior on Default Mode Network Connectivity in School-Age Children. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, v. 19, n. 10, p. 10-pg., 2022-05-01. (21/05332-8, 18/04654-9, 14/50917-0, 16/19376-9, 18/21934-5)

FUJITA, ANDRE; LIRA, EDUARDO SILVA; SANTOS, SUZANA DE SIQUEIRA; BANDO, SILVIA YUMI; SOARES, GABRIELA ELEUTERIO; TAKAHASHI, DANIEL YASUMASA. A semi-parametric statistical test to compare complex networks. JOURNAL OF COMPLEX NETWORKS, v. 8, n. 2, APR 2020. (18/17996-5, 18/21934-5, 15/21162-4, 15/01587-0)

CREIGHTON, RACHEL; SCHUCH, VIVIANE; URBANSKI, ALYSSON H.; GIDDALURU, JEEVAN; COSTA-MARTINS, ANDRE G.; NAKAYA, I, HELDER. Network vaccinology. SEMINARS IN IMMUNOLOGY, v. 50, AUG 2020. (18/14933-2, 17/27131-9, 13/08216-2, 18/21934-5)

KESWANI, DISHA; MARSZALEK, MIKOLAJ; WICIK, ZOFIA; EYILETEN, CEREN; NOWAK, ANNA; SIMOES, SERGIO; MARTINS, DAVID; KLOS, KRZYSZTOF; WLODARCZYK, WOJCIECH; ASSINGER, ALICE; et al. Changes of ACE-2 related-miR-200b-3p expression over time are a predictive factor of long hospitalization for COVID-19: in silico, machine learning and validation analysis. Journal of Pharmacology and Experimental Therapeutics, v. 385, p. 2-pg., 2023-06-01. (18/18560-6, 18/21934-5)

RAMOS, TAIANE COELHO; MOURAO-MIRANDA, JANAINA; FUJITA, ANDRE. Spectral density-based clustering algorithms for complex networks. FRONTIERS IN NEUROSCIENCE, v. 17, p. 14-pg., 2023-03-30. (20/08343-8, 18/21934-5, 19/22845-9)

RELVAS, CARLOS E. M.; NAKATA, ASUKA; CHEN, GUOAN; BEER, DAVID G.; GOTOH, NORIKO; FUJITA, ANDRE. A model-based clustering algorithm with covariates adjustment and its application to lung cancer stratification. JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, v. 21, n. 04, p. 26-pg., 2023-09-08. (18/21934-5, 18/17996-5)

RIBEIRO, LUIZ C. F.; DE ROSA, GUSTAVO H.; RODRIGUES, DOUGLAS; PAPA, JOAO P.. Convolutional neural networks ensembles through single-iteration optimization. SOFT COMPUTING, v. 26, n. 8, p. 12-pg., 2022-01-29. (14/12236-1, 19/07665-4, 13/07375-0, 17/25908-6, 19/02205-5, 18/21934-5)

PASSOS, LEANDRO A.; PAPA, JOAO PAULO; HUSSAIN, AMIR; ADEEL, AHSAN. Canonical cortical graph neural networks and its application for speech enhancement in audio-visual hearing aids. Neurocomputing, v. 527, p. 8-pg., 2023-01-20. (14/12236-1, 19/07665-4, 13/07375-0, 17/02286-0, 19/18287-0, 18/21934-5)

SATO, JOAO RICARDO; BIAZOLI, CLAUDINEI EDUARDO; BUENO, ANA PAULA ARANTES; CAYE, ARTHUR; PAN, PEDRO MARIO; SANTORO, MARCOS; HONORATO-MAUER, JESSICA; SALUM, GIOVANNI ABRAHAO; HOEXTER, MARCELO QUEIROZ; BRESSAN, RODRIGO AFFONSECA; et al. Polygenic risk score for attention-deficit/hyperactivity disorder and brain functional networks segregation in a community-based sample. GENES BRAIN AND BEHAVIOR, v. N/A, p. 9-pg., 2023-02-21. (18/04654-9, 16/13737-0, 13/08531-5, 21/05332-8, 16/04983-7, 18/21934-5)

EYILETEN, CEREN; WICIK, ZOFIA; SIMOES, SERGIO N.; MARTINS-JR, DAVID C.; KLOS, KRZYSZTOF; WLODARCZYK, WOJCIECH; ASSINGER, ALICE; SOLDACKI, DARIUSZ; CHCIALOWSKI, ANDRZEJ; SILLER-MATULA, JOLANTA M.; et al. Thrombosis-related circulating miR-16-5p is associated with disease severity in patients hospitalised for COVID-19. RNA BIOLOGY, v. 19, n. 1, p. 17-pg., 2022-12-31. (18/18560-6, 18/21934-5)

RODRIGUES, PAULA G.; STEFANO FILHO, CARLOS A.; TAKAHATA, ANDRE K.; SUYAMA, RICARDO; ATTUX, ROMIS; CASTELLANO, GABRIELA; SATO, JOAO R.; NASUTO, SLAWOMIR J.; SORIANO, DIOGO C.; BENITO, RM; et al. Can Dynamic Functional Connectivity Be Used to Distinguish Between Resting-State and Motor Imagery in EEG-BCIs?. COMPLEX NETWORKS & THEIR APPLICATIONS X, VOL 2, v. 1016, p. 12-pg., 2022-01-01. (19/09512-0, 18/21934-5, 13/07559-3)

AYAZ, HASAN; BAKER, WESLEY B.; BLANEY, GILES; BOAS, DAVID A.; BORTFELD, HEATHER; BRADY, KENNETH; BRAKE, JOSHUA; BRIGADOI, SABRINA; BUCKLEY, ERIN M.; CARP, STEFAN A.; et al. Optical imaging and spectroscopy for the study of the human brain: status report. NEUROPHOTONICS, v. 9, p. 65-pg., 2022-08-01. (18/04654-9, 19/21962-1, 16/22990-0, 13/07559-3, 21/05332-8, 18/21934-5)

TRAMBAIOLLI, LUCAS R. R.; CASSANI, RAYMUNDO; BIAZOLI JR, CLAUDINEI E. E.; CRAVO, ANDRE M.; SATO, JOAO R.; FALK, TIAGO H. H.. Multimodal resting-state connectivity predicts affective neurofeedback performance. FRONTIERS IN HUMAN NEUROSCIENCE, v. 16, p. 12-pg., 2022-09-08. (18/04654-9, 15/17406-5, 18/21934-5)

DO NASCIMENTO, DIEGO CARVALHO; SANTOS DA SILVA, JOSE ROBERTO; ARA, ANDERSON; SATO, JOAO RICARDO; COSTA, LILIA. Hyperscanning fNIRS data analysis using multiregression dynamic models: an illustration in a violin duo. FRONTIERS IN COMPUTATIONAL NEUROSCIENCE, v. 17, p. 13-pg., 2023-07-27. (18/04654-9, 18/21934-5)

IVANOV, ILIYAN; BOEDHOE, PREMIKA S. W.; ABE, YOSHINARI; ALONSO, PINO; AMEIS, STEPHANIE H.; ARNOLD, PAUL D.; BALACHANDER, SRINIVAS; BAKER, JUSTIN T.; BANAJ, NERISA; BARGALLO, NURIA; et al. Associations of medication with subcortical morphology across the lifespan in OCD: Results from the international ENIGMA Consortium. Journal of Affective Disorders, v. 318, p. 13-pg., 2022-12-01. (11/21357-9, 18/04654-9, 18/21934-5)

MENDES, SERGIO LEONARDO; PINAYA, WALTER HUGO LOPEZ; PAN, PEDRO MARIO; JACKOWSKI, ANDREA PAROLIN; BRESSAN, RODRIGO AFFONSECA; SATO, JOAO RICARDO. Generalizability of 3D CNN models for age estimation in diverse youth populations using structural MRI. SCIENTIFIC REPORTS, v. 13, n. 1, p. 12-pg., 2023-04-27. (18/04654-9, 22/07782-3, 18/21934-5, 21/05332-8)

JODAS, DANILO SAMUEL; PASSOS, LEANDRO APARECIDO; ADEEL, AHSAN; PAPA, JOAO PAULO. PL-kNN: A Python-based implementation of a parameterless k-Nearest Neighbors classifier. SOFTWARE IMPACTS, v. 15, p. 3-pg., 2022-12-21. (14/12236-1, 19/07665-4, 13/07375-0, 17/02286-0, 19/18287-0, 18/21934-5)

TRAMBAIOLLI, LUCAS R.; DEAN, PHILIP J. A.; CRAVO, ANDRE M.; STERR, ANNETTE; SATO, JOAO R.; IEEE. Current brain activity is a predictor of longitudinal motor imagery performance. 2020 IEEE INTERNATIONAL CONFERENCE ON SYSTEMS, MAN, AND CYBERNETICS (SMC), v. N/A, p. 6-pg., 2020-01-01. (15/17406-5, 18/21934-5, 18/04654-9, 13/10952-9)

MARCOS ANTÔNIO MACÊDO; JOÃO RICARDO SATO; RODRIGO A. BRESSAN; PEDRO MARIO PAN. Adolescent depression and resting-state fMRI brain networks: a scoping review of longitudinal studies. Revista Brasileira de Psiquiatria, 2022-07-15. (14/50917-0, 18/04654-9, 18/21934-5)

SOARES JR, RAIMUNDO DA SILVA; LUKASOVA, KATERINA; CARTHERY-GOULART, MARIA TERESA; SATO, JOAO RICARDO. Student's Perspective and Teachers' Metacognition: Applications of Eye-Tracking in Education and Scientific Research in Schools. FRONTIERS IN PSYCHOLOGY, v. 12, JUL 22 2021. (19/25795-2, 18/04654-9, 18/21934-5)

TRAMBAIOLLI, LUCAS R.; TOSSATO, JULIANA; CRAVO, ANDRE M.; BIAZOLI, JR., CLAUDINEI E.; SATO, JOAO R.. Subject-independent decoding of affective states using functional near-infrared spectroscopy. PLoS One, v. 16, n. 1, JAN 7 2021. (18/21934-5, 18/04654-9, 15/17406-5, 17/05225-1)

PINTO, BRUNA G. G.; OLIVEIRA, ANTONIO E. R.; SINGH, YOUVIKA; JIMENEZ, LEANDRO; GONCALVES, ANDRE N. A.; OGAVA, RODRIGO L. T.; CREIGHTON, RACHEL; SCHATZMANN PERON, JEAN PIERRE; NAKAYA, I, HELDER. ACE2 Expression Is Increased in the Lungs of Patients With Comorbidities Associated With Severe COVID-19. Journal of Infectious Diseases, v. 222, n. 4, p. 556-563, AUG 15 2020. (12/19278-6, 18/14933-2, 18/21934-5, 13/08216-2, 17/50137-3)

OKU, AMANDA YUMI AMBRIOLA; SATO, JOAO RICARDO. Predicting Student Performance Using Machine Learning in fNIRS Data. FRONTIERS IN HUMAN NEUROSCIENCE, v. 15, FEB 5 2021. (19/17907-5, 18/04654-9, 18/21934-5)

REBELLO, KEILA; MOURA, LUCIANA M.; XAVIER, GABRIELA; SPINDOLA, LETICIA M.; CARVALHO, CAROLINA MUNIZ; HOEXTER, MARCELO QUEIROZ; GADELHA, ARY; PICON, FELIPE; PAN, PEDRO MARIO; ZUGMAN, ANDRE; et al. Association between spontaneous activity of the default mode network hubs and leukocyte telomere length in late childhood and early adolescence. JOURNAL OF PSYCHOSOMATIC RESEARCH, v. 127, DEC 2019. (13/08531-5, 18/21934-5, 14/50917-0, 14/07280-1, 18/04654-9)

GONZALEZ-DIAS, PATRICIA; LEE, EVA K.; SORGI, SARA; DE LIMA, DIOGENES S.; URBANSKI, ALYSSON H.; SILVEIRA, EDUARDO LV; NAKAYA, HELDER I.. Methods for predicting vaccine immunogenicity and reactogenicity. HUMAN VACCINES & IMMUNOTHERAPEUTICS, v. 16, n. 2, DEC 2019. (13/08216-2, 18/21934-5, 18/14933-2)

SATO, JOAO RICARDO; BIAZOLI JR, CLAUDINEI EDUARDO; MOURA, LUCIANA MONTEIRO; CROSSLEY, NICOLAS; ZUGMAN, ANDRE; PICON, FELIPE ALMEIDA; HOEXTER, MARCELO QUEIROZ; AMARO JR, EDSON; MIGUEL, EURIPEDES CONSTANTINO; ROHDE, LUIS AUGUSTO; et al. Association Between Fractional Amplitude of Low-Frequency Spontaneous Fluctuation and Degree Centrality in Children and Adolescents. BRAIN CONNECTIVITY, v. 9, n. 5, p. 379-387, JUN 1 2019. (16/04983-7, 13/08531-5, 18/21934-5, 14/50917-0, 18/04654-9)

HEINZE, RAFAEL ALVES; VANZELLA, PATRICIA; ZIMEO MORAIS, GUILHERME AUGUSTO; SATO, JOAO RICARDO. Hand motor learning in a musical context and prefrontal cortex hemodynamic response: a functional near-infrared spectroscopy (fNIRS) study. COGNITIVE PROCESSING, v. 20, n. 4, p. 507-513, NOV 2019. (18/21934-5, 18/04654-9)

VATTIMO, EDOARDO F. Q.; BARROS, VIVIAN B.; REQUENA, GUARACI; SATO, JOAO R.; FATORI, DANIEL; MIGUEL, EURIPEDES C.; SHAVITT, ROSELI G.; HOEXTER, MARCELO Q.; BATISTUZZO, MARCELO C.. Caudate volume differences among treatment responders, non-responders and controls in children with obsessive-compulsive disorder. EUROPEAN CHILD & ADOLESCENT PSYCHIATRY, v. 28, n. 12, p. 1607-1617, DEC 2019. (13/08531-5, 18/21934-5, 18/04654-9, 14/50917-0, 09/09949-8)

DOS SANTOS, PEDRO MACHADO NERY; MENDES, SERGIO LEONARDO; BIAZOLI, CLAUDINEI; GADELHA, ARY; SALUM, GIOVANNI ABRAHAO; MIGUEL, EURIPEDES CONSTANTINO; ROHDE, LUIS AUGUSTO; SATO, JOAO RICARDO. Assessing atypical brain functional connectivity development: An approach based on generative adversarial networks. FRONTIERS IN NEUROSCIENCE, v. 16, p. 12-pg., 2023-01-09. (22/07782-3, 18/04654-9, 20/04119-6, 14/50917-0, 21/05332-8, 18/21934-5)

GUZMAN, GROVER E. C.; FUJITA, ANDRE. A fast algorithm to approximate the spectral density of locally tree-like networks with assortativity. JOURNAL OF COMPLEX NETWORKS, v. 11, n. 2, p. 15-pg., 2023-02-23. (19/22845-9, 18/21934-5)

SANTOS, MARCUS VINICIUS C.; FELTRIN, ARTHUR S. S.; COSTA-AMARAL, ISABELE C. C.; TEIXEIRA, LILIANE R. R.; PERINI, JAMILA A. A.; MARTINS JR, DAVID C. C.; LARENTIS, ARIANE L. L.. Network Analysis of Biomarkers Associated with Occupational Exposure to Benzene and Malathion. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, v. 24, n. 11, p. 18-pg., 2023-05-28. (18/18560-6, 18/21934-5)

SALVATORE, FELIPE DE SOUZA; FINGER, MARCELO; HIRATA JR, ROBERTO; PATRIOTA, ALEXANDRE G.. A resampling-based method to evaluate NLI models. NATURAL LANGUAGE ENGINEERING, v. N/A, p. 28-pg., 2023-06-09. (15/24485-9, 14/12236-1, 19/07665-4, 15/21880-4, 18/21934-5, 15/22308-2)

SATO, JOAO RICARDO; PEREIRA, TIAGO DUARTE; MARTINS, CLARICE MARIA DE LUCENA; BEZERRA, THAYNA ALVES; QUEIROZ, MARIA EDUARDA; COSTA, LARISSA PEREIRA; ANDRADE, SUELLEN MARINHO; BIAZOLI, CLAUDINEI EDUARDO. A Novel Exploratory Graph-Based Analytical Tool for Functional Near-Infrared Spectroscopy in Naturalistic Experiments: An Illustrative Application in Typically Developing Children. BRAIN SCIENCES, v. 13, n. 6, p. 9-pg., 2023-06-01. (18/04654-9, 19/27250-3, 18/21934-5, 21/05332-8)

SOARES JR, RAIMUNDO DA SILVA; BARRETO, CANDIDA; SATO, JOAO R.. Perspectives in eye-tracking technology for applications in education. SOUTH AFRICAN JOURNAL OF CHILDHOOD EDUCATION, v. 13, n. 1, p. 8-pg., 2023-06-19. (18/04654-9, 18/21934-5)

FERNANDO ANDRADE; ASUKA NAKATA; NORIKO GOTOH; ANDRÉ FUJITA. Large miRNA survival analysis reveals a prognostic four-biomarker signature for triple negative breast cancer. GENETICS AND MOLECULAR BIOLOGY, v. 43, n. 1, 2020-03-02. (18/21934-5, 15/01587-0, 16/13422-9)

RIBEIRO, ADELE HELENA; VIDAL, MACIEL CALEBE; SATO, JOAO RICARDO; FUJITA, ANDRE. Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder. Entropy, v. 23, n. 9, SEP 2021. (18/04654-9, 18/21934-5)

IWASHITA, ADRIANA SAYURI; RODRIGUES, DOUGLAS; GASTALDELLO, DANILO SINKITI; DE SOUZA, ANDRE NUNES; PAPA, JOAO PAULO. An incremental Optimum-Path Forest classifier and its application to non-technical losses identification. COMPUTERS & ELECTRICAL ENGINEERING, v. 95, OCT 2021. (14/12236-1, 19/07665-4, 18/21934-5, 17/02286-0, 13/07375-0)

BRANDAO, W. N.; DE OLIVEIRA, M. G.; ANDREONI, R. T.; NAKAYA, H.; FARIAS, A. S.; PERON, J. P. S.. Neuroinflammation at single cell level: What is new?. Journal of Leukocyte Biology, AUG 2020. (13/08216-2, 18/21934-5, 17/50137-3, 17/26170-0, 12/19278-6, 17/22504-1, 17/21363-5, 18/14933-2, 19/06372-3)

DA SILVA FERREIRA BARRETO, CANDIDA; ZIMEO MORAIS, GUILHERME AUGUSTO; VANZELLA, PATRICIA; SATO, JOAO RICARDO. Combining the intersubject correlation analysis and the multivariate distance matrix regression to evaluate associations between fNIRS signals and behavioral data from ecological experiments. Experimental Brain Research, v. 238, n. 10, AUG 2020. (18/21934-5, 18/04654-9)

SIQUEIRA, RODRIGO A. DE O.; STEFANES, MARCO A.; ROZANTE, LUIZ C. S.; MARTINS-JR, DAVID C.; DE SOUZA, JORGE E. S.; ARAUJO, ELOI; GERVASI, O; MURGANTE, B; MISRA, S; GARAU, C; et al. Multi-GPU Approach for Large-Scale Multiple Sequence Alignment. COMPUTATIONAL SCIENCE AND ITS APPLICATIONS, ICCSA 2021, PT I, v. 12949, p. 16-pg., 2021-01-01. (18/21934-5, 18/18560-6)

SATO, JOAO RICARDO; BIAZOLI, CLAUDINEI EDUARDO; ZUGMAN, ANDRE; PAN, PEDRO MARIO; ARANTES BUENO, ANA PAULA; MOURA, LUCIANA MONTEIRO; GADELHA, ARY; PICON, FELIPE ALMEIDA; AMARO JR, EDSON; SALUM, GIOVANNI ABRAHAO; et al. Long-term stability of the cortical volumetric profile and the functional human connectome throughout childhood and adolescence. European Journal of Neuroscience, v. 54, n. 6, SEP 2021. (18/21934-5, 16/19376-9, 13/08531-5, 14/50917-0, 18/04654-9)

JARDIM, VINICIUS CARVALHO; SANTOS, SUZANA DE SIQUEIRA; FUJITA, ANDRE; BUCKERIDGE, MARCOS SILVEIRA. BioNetStat: A Tool for Biological Networks Differential Analysis. FRONTIERS IN GENETICS, v. 10, JUN 21 2019. (14/50884-5, 18/21934-5, 16/13422-9, 15/21162-4, 08/57908-6)

BAECKER, LEA; DAFFLON, JESSICA; DA COSTA, PEDRO F.; GARCIA-DIAS, RAFAEL; VIEIRA, SANDRA; SCARPAZZA, CRISTINA; CALHOUN, VINCE D.; SATO, JOAO R.; MECHELLI, ANDREA; PINAYA, WALTER H. L.. Brain age prediction: A comparison between machine learning models using region- and voxel-based morphometric data. Human Brain Mapping, v. 42, n. 8, MAR 2021. (18/21934-5, 18/04654-9)

DE SOUZA, RENATO WILLIAM R.; DE OLIVEIRA, JOAO VITOR CHAVES; PASSOS, JR., LEANDRO A.; DING, WEIPING; PAPA, JOAO P.; DE ALBUQUERQUE, VICTOR HUGO C.. A Novel Approach for Optimum-Path Forest Classification Using Fuzzy Logic. IEEE TRANSACTIONS ON FUZZY SYSTEMS, v. 28, n. 12, p. 3076-3086, DEC 2020. (13/07375-0, 17/25908-6, 18/21934-5, 16/19403-6, 14/12236-1)

PASSOS, LEANDRO APARECIDO S.; JODAS, DANILO S.; RIBEIRO, LUIZ C. F.; AKIO, MARCO; DE SOUZA, ANDRE NUNES; PAPA, JOAO PAULO. Handling imbalanced datasets through Optimum-Path Forest. KNOWLEDGE-BASED SYSTEMS, v. 242, p. 13-pg., 2022-04-22. (18/21934-5, 14/12236-1, 20/12101-0, 19/18287-0, 19/07665-4, 17/02286-0, 13/07375-0)

NOGUEIRA, MATEUS G.; SILVESTRIN, MATEUS; BARRETO, CANDIDA S. F.; SATO, JOAO RICARDO; MESQUITA, RICKSON C.; BIAZOLI, CLAUDINEI; BAPTISTA, ABRAHAO F.. Differences in brain activity between fast and slow responses on psychomotor vigilance task: an fNIRS study. BRAIN IMAGING AND BEHAVIOR, v. N/A, p. 12-pg., 2022-01-29. (16/24951-2, 18/21934-5)

MARCOS ANTÔNIO MACÊDO; JOÃO RICARDO SATO; RODRIGO A. BRESSAN; PEDRO MARIO PAN. Adolescent depression and resting-state fMRI brain networks: a scoping review of longitudinal studies. Revista Brasileira de Psiquiatria, v. 44, n. 4, p. 420-433, 2022-07-15. (18/21934-5, 14/50917-0, 18/04654-9)

TOVAR, CARLOS R. P.; MARTINS-, DAVID C., JR.; ROZANTE, LUIZ C. S.; ARAUJO, ELOI; IEEE COMP SOC. A Method for Computing Attractor Fields in Coupled Boolean Networks. 2022 IEEE 22ND INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOENGINEERING (BIBE 2022), v. N/A, p. 6-pg., 2022-01-01. (18/18560-6, 18/21934-5)

GUZMAN, GROVER E. CASTRO; FUJITA, ANDRE. Convolution-based linear discriminant analysis for functional data classification. INFORMATION SCIENCES, v. 581, p. 469-478, DEC 2021. (18/17996-5, 18/21934-5, 20/01479-1)

GARCIA-DIAS, RAFAEL; SCARPAZZA, CRISTINA; BAECKER, LEA; VIEIRA, SANDRA; PINAYA, WALTER H. L.; CORVIN, AIDEN; REDOLFI, ALBERTO; NELSON, BARNABY; CRESPO-FACORRO, BENEDICTO; MCDONALD, COLM; et al. Neuroharmony: A new tool for harmonizing volumetric MRI data from unseen scanners. NeuroImage, v. 220, OCT 15 2020. (18/21934-5, 18/04654-9)

JANZEN, THENILLE BRAUN; DE OLIVEIRA, BRUNA; FERREIRA, GIULIA VENTORIM; SATO, JOAO R.; FEITOSA-SANTANA, CLAUDIA; VANZELLA, PATRICIA. The effect of background music on the aesthetic experience of a visual artwork in a naturalistic environment. PSYCHOLOGY OF MUSIC, v. N/A, p. 17-pg., 2022-03-17. (18/21934-5)

BRANDAO, W. N.; DE OLIVEIRA, M. G.; ANDREONI, R. T.; NAKAYA, H.; FARIAS, A. S.; PERON, J. P. S.. Neuroinflammation at single cell level: What is new?. Journal of Leukocyte Biology, v. 108, n. 4, p. 9-pg., 2020-08-10. (17/22504-1, 13/08216-2, 18/14933-2, 19/06372-3, 17/21363-5, 17/26170-0, 12/19278-6, 17/50137-3, 18/21934-5)

MENDES, SERGIO LEONARDO; LOPEZ PINAYA, WALTER HUGO; PAN, PEDRO; SATO, JOAO RICARDO. Estimating Gender and Age from Brain Structural MRI of Children and Adolescents: A 3D Convolutional Neural Network Multitask Learning Model. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE, v. 2021, MAY 26 2021. (18/21934-5, 18/04654-9)

ARIAS-CARRASCO, RAUL; GIDDALURU, JEEVAN; CARDOZO, LUCAS E.; MARTINS, FELIPE; MARACAJA-COUTINHO, VINICIUS; NAKAYA, HELDER I.. OUTBREAK: a user-friendly georeferencing online tool for disease surveillance. Biological Research, v. 54, n. 1, JUL 8 2021. (18/14933-2, 13/08216-2, 19/16419-7, 18/21934-5, 17/50137-3)

MORETTI, EDUARDO H.; RODRIGUES, ABNER C.; MARQUES, BRUNO V.; TOTOLA, LEONARDO T.; FERREIRA, CAROLINE B.; BRITO, CAMILA F.; MATOS, CAROLINE M.; DA SILVA, FILIPE A.; SANTOS, ROBSON A. S.; LOPES, LUCIANA B.; et al. Autoregulation of blood flow drives early hypotension in a rat model of systemic inflammation induced by bacterial lipopolysaccharide. PNAS NEXUS, v. 2, n. 2, p. 13-pg., 2023-02-01. (18/13877-1, 20/00631-4, 18/03418-0, 20/09399-7, 15/23376-1, 18/21934-5)

BRUIN, WILLEM B.; TAYLOR, LUKE; THOMAS, RAJAT M.; SHOCK, JONATHAN P.; ZHUTOVSKY, PAUL; ABE, YOSHINARI; ALONSO, PINO; AMEIS, STEPHANIE H.; ANTICEVIC, ALAN; ARNOLD, PAUL D.; et al. Structural neuroimaging biomarkers for obsessive-compulsive disorder in the ENIGMA-OCD consortium: medication matters. TRANSLATIONAL PSYCHIATRY, v. 10, n. 1, p. 12-pg., 2020-10-08. (11/21357-9, 18/04654-9, 18/21934-5)

PIRES, RAFAEL G.; SANTOS, DANIEL S.; SOUZA, GUSTAVO B.; LEVADA, ALEXANDRE L. M.; PAPA, JOAO PAULO; TETKO, IV; KURKOVA, V; KARPOV, P; THEIS, F. A Sparse Filtering-Based Approach for Non-blind Deep Image Denoising. ARTIFICIAL NEURAL NETWORKS AND MACHINE LEARNING - ICANN 2019: WORKSHOP AND SPECIAL SESSIONS, v. 11731, p. 12-pg., 2019-01-01. (14/16250-9, 14/12236-1, 16/19403-6, 18/21934-5)

LUSCHER-DIAS, THOMAZ; SIQUEIRA DALMOLIN, RODRIGO JULIANI; AMARAL, PAULO DE PAIVA; ALVES, TIAGO LUBIANA; SCHUCH, VIVIANE; FRANCO, GLORIA REGINA; NAKAYA, HELDER I.. The evolution of knowledge on genes associated with human diseases. ISCIENCE, v. 25, n. 1, p. 22-pg., 2022-01-21. (18/14933-2, 18/21934-5)

CUNHA, MATEUS TRINCONI; DE SOUZA BORGES, ANA PAULA; JARDIM, VINICIUS CARVALHO; FUJITA, ANDRE; DE CASTRO JR, GILBERTO. Predicting survival in metastatic non-small cell lung cancer patients with poor ECOG-PS: A single-arm prospective study. CANCER MEDICINE, v. N/A, p. 11-pg., 2022-09-26. (15/22814-5, 16/20187-6, 18/21934-5, 19/03615-2)

SOARES JR, RAIMUNDO DA SILVA; OKU, AMANDA YUMI AMBRIOLA; BARRETO, CANDIDA S. F.; SATO, JOAO RICARDO. Applying functional near-infrared spectroscopy and eye-tracking in a naturalistic educational environment to investigate physiological aspects that underlie the cognitive effort of children during mental rotation tests. FRONTIERS IN HUMAN NEUROSCIENCE, v. 16, p. 14-pg., 2022-08-12. (18/21934-5, 19/17907-5, 18/04654-9)

GUZMAN, GROVER E. C.; STADLER, PETER F.; FUJITA, ANDRE. Efficient eigenvalue counts for tree-like networks. JOURNAL OF COMPLEX NETWORKS, v. 10, n. 5, p. 15-pg., 2022-08-23. (20/08343-8, 19/22845-9, 18/21934-5)

JODAS, DANILO SAMUEL; PASSOS, LEANDRO APARECIDO; ADEEL, AHSAN; PAPA, JOAO PAULO; IEEE. PL-kNN: A Parameterless Nearest Neighbors Classifier. 2022 29TH INTERNATIONAL CONFERENCE ON SYSTEMS, SIGNALS AND IMAGE PROCESSING (IWSSIP), v. N/A, p. 4-pg., 2022-01-01. (14/12236-1, 19/07665-4, 17/02286-0, 19/18287-0, 18/21934-5)

AQUIME GONCALVES, ANDRE NICOLAU; MASO, VANESSA ESCOLANO; SANTOS DE CASTRO, ICARO MAIA; VASCONCELOS, AMANDA PEREIRA; TOMIO OGAVA, RODRIGO LUIZ; NAKAYA, HELDER, I. High-Throughput Transcriptome Analysis for Investigating Host-Pathogen Interactions. JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, v. N/A, n. 181, p. 22-pg., 2022-03-01. (18/14933-2, 13/08216-2, 19/13880-5, 19/16418-0, 19/27146-1, 12/19278-6, 20/05284-0, 17/50137-3, 18/21934-5)

AGUIAR, RENATO S.; POHL, FABIO; MORAIS, GUILHERME L.; NOGUEIRA, FABIO C. S.; DE CARVALHO, JOSEANE B.; GUIDA, LETICIA; ARGE, LUIS W. P.; MELO, ADRIANA; MOREIRA, MARIA E. L.; CUNHA, DANIELA P.; et al. Molecular alterations in the extracellular matrix in the brains of newborns with congenital Zika syndrome. SCIENCE SIGNALING, v. 13, n. 635, p. 13-pg., 2020-06-09. (13/08216-2, 17/50137-3, 18/14933-2, 18/21934-5, 12/19278-6)

PERON, J. P. S.; NAKAYA, H., I; SCHLINDWEIN, M. A. M.; GONCALVES, M. V. M.. COVID-19 Pandemic and Dysbiosis: Can the Ivermectin Hysteria Lead to an Increase of Autoimmune Neuroinflammatory Diseases?. CRITICAL REVIEWS IN IMMUNOLOGY, v. 40, n. 6, p. 6-pg., 2020-01-01. (17/22504-1, 19/06372-3, 13/08216-2, 17/21363-5, 18/14933-2, 18/21934-5, 12/19278-6)

LOPES, LEONARDO TADEU; VALEM, LUCAS PASCOTTI; GUIMARAES PEDRONETTE, DANIEL CARLOS; GUILHERME, IVAN RIZZO; PAPA, JOAO PAULO; SILVA SANTANA, MARCOS CLEISON; COLOMBO, DANILO; FARINELLA, GM; RADEVA, P; BRAZ, J. Manifold Learning-based Clustering Approach Applied to Anomaly Detection in Surveillance Videos. VISAPP: PROCEEDINGS OF THE 15TH INTERNATIONAL JOINT CONFERENCE ON COMPUTER VISION, IMAGING AND COMPUTER GRAPHICS THEORY AND APPLICATIONS, VOL 4: VISAPP, v. N/A, p. 9-pg., 2020-01-01. (18/15597-6, 14/12236-1, 13/07375-0, 17/25908-6, 19/07825-1, 18/21934-5)

AL-SHARADQAH, ALI A.; PATRIOTA, ALEXANDRE G.. On estimating the boundaries of a uniform distribution under additive measurement errors. JOURNAL OF STATISTICAL COMPUTATION AND SIMULATION, v. 92, n. 10, p. 29-pg., 2022-02-04. (18/21934-5)

QUEIROZ DE PAIVA, JOSELISA PERES; MAGALHAES, SAMIR CAMARA; MOURA, LUCIANA MONTEIRO; SATO, JOAO RICARDO; AMARO JR, EDSON; STERR, ANNETTE; SCHLAFFKE, LARA; ECKELI, ALAN LUIZ; PRADO, GILMAR FERNANDES; CONFORTO, ADRIANA BASTOS. Sensorimotor white matter projections and disease severity in primary Restless Legs Syndrome/Willis-Ekbom disease: a multimodal DTI analysis. Sleep Medicine, v. 73, p. 11-pg., 2020-09-01. (18/04654-9, 18/21934-5)