Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa

• Processo: 12/50260-6
• Modalidade de apoio: Auxílio à Pesquisa - Programa BIOTA - Temático
• Vigência: 01 de setembro de 2012 - 30 de novembro de 2018
• Área do conhecimento: Ciências Biológicas - Botânica
• Convênio/Acordo: NSF - Dimensions of Biodiversity e BIOTA
• Pesquisador responsável: Lúcia Garcez Lohmann
• Beneficiário: Lúcia Garcez Lohmann
• Pesq. responsável no exterior: Joel Lester Cracraft
• Instituição no exterior: American Museum of Natural History, Estados Unidos
• Instituição Sede: Instituto de Biociências (IB). Universidade de São Paulo (USP). São Paulo , SP, Brasil
• Pesquisadores principais: André Victor Lucci Freitas ; Diogo Meyer ; Francisco William da Cruz Junior ; Plínio Barbosa de Camargo ; Renato Paes de Almeida ; Thiago Sanna Freire Silva
• Auxílios(s) vinculado(s): 17/14700-5 - 15th International Conference on Luminescence and Electron Spin Resonance Dating, AR.EXT
• Bolsa(s) vinculada(s): 17/12797-1 - Trocas bióticas entre biomas da região neotropical: evidências das Bignoniaceae e de outros clados de angiospermas, BE.PQ; 17/03018-9 - Processamento de dados de sísmica rasa para caracterização de estruturas sedimentares em depósitos do Rio Amazonas, BP.IC; 17/00465-4 - Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa, BP.TT; + mais bolsas vinculadas 16/20946-4 - Database organization and sequence data acquisition and analysis, BP.TT; 16/04143-9 - Revisão taxonômica, filogenia e biogeografia de Martinella Baill. (Bignonieae, Bignoniaceae), BP.MS; 16/08356-7 - Estruturação e evolução da biota amazônica: biogeografia de aves, BP.PD; 16/11626-6 - Criação de chaves interativos on-line para a identificação de espécies de Bignonieae (Bignoniaceae), BP.TT; 16/08685-0 - Integration of environmental data sets to describe and explore Amazonian biodiversity patterns, with enlistment of Earth-orbiting satellite remote sensing information, BP.PD; 16/01772-5 - Estruturação e evolução da biota Amazônia e seu ambiente: uma abordagem integrativa, BP.TT; 15/25162-9 - Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa, BP.TT; 15/10914-5 - Filogenia, revisão taxonômica, evolução floral e biogeografia de Tanaecium Sw. (Bignonieae, Bignoniaceae), BP.DR; 15/13928-7 - Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa, BP.TT; 14/23334-4 - Reconstrução de mudanças no sistema fluvial da Amazônia durante o Cenozoico tardio (<5 Ma) por meio da integração de análises por luminescência opticamente estimulada (OSL) e nuclídeos cosmogênicos (TCN)., BP.PD; 14/09800-2 - Depósitos de grandes rios na região do Rio Solimões, Amazônia Brasileira: evolução no Neogeno e seu papel como barreiras biogeográficas, BP.PD; 14/20540-2 - Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa, BP.TT; 14/14782-3 - Estruturação e evolução da biota Amazônia e seu ambiente: uma abordagem integrativa, BP.TT; 14/15883-8 - Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa, BP.TT; 14/15924-6 - Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa, BP.TT; 14/00113-2 - Filogeografia comparada de quatro complexos de espécies de aves amazônicas: reconstruindo processos biogeográficos a partir do sequenciamento de elementos ultra conservados, BP.DR; 14/05582-0 - Estruturação e evolução da biota amazônica e seu ambiente: paleobotânica e palinologia da Bacia Amazônica, BP.PD; 13/11706-1 - Filogenia, biogeografia e diversificação de Amphilophium (Bignonieae, Bignoniaceae), BP.PD; 13/20424-0 - Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa, BP.TT; 13/12633-8 - Filogeografia comparada de plantas na Amazônia Central, BP.PD; 13/03725-6 - Estruturação e evolução da biota amazônica e seu ambiente: uma abordagem integrativa, BP.TT; 09/52161-2 - Filogenia e biogeografia de Anemopaegma Mart. ex Meisn. (Bignoniaceae), BP.PD - menos bolsas vinculadas
• Assunto(s): Amazônia Evolução biológica Biogeografia
• Palavra(s)-Chave do Pesquisador: Amazonia | Biogeograpy | Biota Assemblys | Evolution
• Publicação FAPESP: https://media.fapesp.br/bv/uploads/pdfs/Brazilian_biodiversity...future_0UMQlO0_37_38.pdf

Resumo

Nós propomos fazer uma nova síntese evolutiva sobre a biodiversidade amazônica que visa responder 11 questões chave utilizando 4 grupos modelo como base (borboletas, plantas, aves, e primatas): Pergunta 1 visará um melhor entendimento dos padrões de distribuição na Amazônia. Desenvolveremos o maior banco de dados georeferenciado para plantas vasculares Amazônicas e vertebrados terrestres disponível até hoje e utilizaremos estas informações para responder questões fundamentais sobre padrões de distribuição da biodiversidade. Pergunta 2 focará nas associações entre os padrões de distribuição definidos anteriormente e na relação entre estes padrões e variáveis bióticas e abíoticas. Pergunta 3 investigará como a diversidade de espécies está organizada em diferentes escalas geográficas e em padrões de distribuição comuns (endemismos). Em seguida, investigaremos a história da diversidade Amazônica através das perguntas 4 & 5. Enquanto a pergunta 4 envolverá um melhor entendimento da história filogenética das espécies nos grupos de interesse, a pergunta 5 focará nos padrões temporais de diversificação destas linhagens. Integraremos estes dados na pergunta 6, de forma a entender a história paleobiogrográfica dos nossos quatro grupos de interesse na Amazônia. A integração das respostas destas perguntas nos fornecerá um conhecimento essencial para um melhor entendimento da origem da estruturação ecológica em diferentes escalas espaciais e nos ajudará a resolver incertezas sobre os padrões e processos de diversificação nesta região. Em seguida, estudaremos a história de mudanças ambientais. Pergunta 7 focará no uso de padrões históricos demográficos e filogeográficos, análises genéticas e modelagem ambiental para inferir padrões de estabilidade ou mudanças desde o Neógeno Tardio. Pergunta 8 focará em aspectos geológicos e utilizará novas informações estratigráficas para nos ajudar a resolver incertezas sobre a história palegeográfica dos sistemas de drenagem da Amazônia e da Amazônia terrestre, particularmente no Oeste desde o Neógeno Tardio, quando o Mundo se tornou mais seco e úmido, e os efeitos do clima se tornaram mais fortes. Questão 9 utilizará de forma integrada, dados paleobiogeográficos, genético-demográficos, e geológicos para entender a ecologia e ambientes passados da Amazônia. A partir destes estudos poderemos examinar a evolução da diversidade estrutural e das paisagens funcionais dos ambientes da Amazônia em diferentes escalas espaciais. Questão 10 utilizará metodologias de macroecologia, sensoriamento remoto, e modelagem climática-atmosférica para entender a relação entre a função dos ecosistemas e a diversidade dos ecosistemas ao longo do tempo. Finalmente, questão 11 nos permitirá entender o papel da história da Amazônia para mudanças globais nos ciclos biogeoquímicos. (AU)

Publicações científicas

(214)

(Referências obtidas automaticamente do Web of Science e do SciELO, por meio da informação sobre o financiamento pela FAPESP e o número do processo correspondente, incluída na publicação pelos autores)

ANDRÉ VICTOR LUCCI FREITAS; EDUARDO PROENÇA BARBOSA; KEITH RICHARD WILLMOTT; NIKLAS WAHLBERG; GERARDO LAMAS. `Species' from two different butterfly genera combined into one: description of a new genus of Euptychiina (Nymphalidae: Satyrinae) with unusually variable wing pattern. Revista Brasileira de Entomologia, v. 60, n. 2, p. 157-165, Jun. 2016. (13/50297-0, 11/50225-3, 12/50260-6, 12/03750-8)

FONSECA, LUIZ HENRIQUE M.; LOHMANN, LUCIA G.. Combining high-throughput sequencing and targeted loci data to infer the phylogeny of the ``Adenocalymma-Neojobertia{''} clade (Bignonieae, Bignoniaceae). Molecular Phylogenetics and Evolution, v. 123, p. 1-15, JUN 2018. (12/50260-6, 11/50859-2)

MATOS, MAYSA V.; BORGES, SERGIO H.; D'HORTA, FERNANDO M.; CORNELIUS, CINTIA; LATRUBESSE, EDGARDO; COHN-HAFT, MARIO; RIBAS, CAMILA C.. Comparative Phylogeography of Two Bird Species, Tachyphonus phoenicius (Thraupidae) and Polytmus theresiae (Trochilidae), Specialized in Amazonian White-sand Vegetation. Biotropica, v. 48, n. 1, SI, p. 110-120, JAN 2016. (12/50260-6)

CARVALHO FRANCISCO, JESSICA NAYARA; LOHMANN, LUCIA G.. Taxonomic revision of Pachyptera (Bignonieae, Bignoniaceae). PHYTOKEYS, n. 92, p. 89-131, JAN 19 2018. (11/50859-2, 12/50260-6)

FONSECA, LUIZ H. M.; LOHMANN, LUCIA G.. Plastome Rearrangements in the ``Adenocalymma-Neojobertia{''} Clade (Bignonieae, Bignoniaceae) and Its Phylogenetic Implications. FRONTIERS IN PLANT SCIENCE, v. 8, NOV 1 2017. (11/50859-2, 12/50260-6)

DE ANDRADE, RAFAEL B.; BALCH, JENNIFER K.; CARREIRA, JUNIA Y. O.; BRANDO, PAULO M.; FREITAS, ANDRE V. L.. The impacts of recurrent fires on diversity of fruit-feeding butterflies in a south-eastern Amazon forest. JOURNAL OF TROPICAL ECOLOGY, v. 33, n. 1, p. 22-32, JAN 2017. (13/00375-4, 12/50260-6, 11/50225-3, 13/19024-7)

NAKAHARA, SHINICHI; MATOS-MARAVI, PAVEL; BARBOSA, EDUARDO P.; WILLMOTT, KEITH R.; LAMAS, GERARDO; FREITAS, ANDRE V. L.. Two New Species of Taygetina With a Possible Case of `Juxta Loss' in Butterflies (Lepidoptera: Nymphalidae: Satyrinae). INSECT SYSTEMATICS AND DIVERSITY, v. 3, n. 6, NOV 2019. (11/50225-3, 12/50260-6, 13/50297-0, 16/15873-8)

RAGSAC, AUDREY C.; FARLAS-SINGER, ROSANA; FREITAS, LORETA B.; LOHMANN, LUCIA G.; OLMSTEAD, RICHARD G.. Phylogeny of the Neotropical tribe Jacarandeae (Bignoniaceae). AMERICAN JOURNAL OF BOTANY, DEC 2019. (12/50260-6)

DE MEDEIROS, LARISSA A.; RIBAS, CAMILA C.; LIMA, ALBERTINA P.. Genetic Diversification of Adelphobates quinquevittatus (Anura: Dendrobatidae) and the Influence of Upper Madeira River Historical Dynamics. Evolutionary Biology, MAR 2021. (12/50260-6)

KAEHLER, MIRIAM. Fridericia resinosa: a new species of Bignoniaceae from Brazil. PHYTOTAXA, v. 461, n. 2, p. 131-135, OCT 2 2020. (12/50260-6, 11/50859-2)

DE MEDEIROS, LARISSA A.; RIBAS, CAMILA C.; LIMA, ALBERTINA P.. Genetic Diversification of Adelphobates quinquevittatus (Anura: Dendrobatidae) and the Influence of Upper Madeira River Historical Dynamics. Evolutionary Biology, v. 48, n. 3, p. 269-285, SEP 2021. (12/50260-6)

ROSSER, NEIL; SHIRAI, LEILA T.; DASMAHAPATRA, KANCHON K.; MALLET, JAMES; FREITAS, ANDRE V. L.. The Amazon river is a suture zone for a polyphyletic group of co-mimetic heliconiine butterflies. ECOGRAPHY, v. 44, n. 2, NOV 2020. (11/50225-3, 12/50260-6, 14/23504-7)

ZACCA, THAMARA; CASAGRANDE, MIRNA M.; MIELKE, OLAF H. H.; HUERTAS, BLANCA; ESPELAND, MARIANNE; FREITAS, ANDRE V. L.; WILLMOTT, KEITH R.; NAKAHARA, SHINICHI; LAMAS, GERARDO. Revalidation of Vareuotychia Forster, 1964, description of Vanima gen. nov., and notes on Euptychia cleophes Godman & Saivin, 1889 (Lepidoptera: Nymphalidae: Satyrinae). Zootaxa, v. 4858, n. 1, p. 1-34, SEP 29 2020. (17/02264-6, 12/50260-6, 11/50225-3, 19/14735-9)

MAGALHAES, KEILA XAVIER; FIGUEIREDO DA SILVA, RAIMUNDO DARLEY; SAWAKUCHI, ANDRE OLIVEIRA; GONCALVES, ALANY PEDROSA; EVANGELISTA GOMES, GRAZIELLE FERNANDA; MURIEL-CUNHA, JANICE; SABAJ, MARK H.; DE SOUSA, LEANDRO MELO. hylogeography of Baryancistrus xanthellus (Siluriformes: Loricariidae), a rheophilic catfish endemic to the Xingu River basin in eastern Amazoni. PLoS One, v. 16, n. 8, AUG 27 2021. (12/50260-6)

MAGALDI, LUIZA MORAES; KAMINSKI, LUCAS AUGUSTO; SERAPHIM, NOEMY; AZEREDO-ESPIN, ANA MARIA; SILVA-BRANDA, KARINA LUCAS; FREITAS, ANDRE VICTOR LUCCI. Hidden in the wing dots: Disentangling mimetic sister species of butterflies (Riodinidae: Stalachtis) with an integrative approach. ZOOLOGISCHER ANZEIGER, v. 294, p. 92-99, SEP 2021. (11/50225-3, 12/16266-7, 12/50260-6, 13/50297-0, 15/24663-4, 10/51340-8)

FONSECA, LUIZ HENRIQUE M.; LOHMANN, LUCIA G.. Exploring the potential of nuclear and mitochondrial sequencing data generated through genome-skimming for plant phylogenetics: A case study from a clade of neotropical lianas. JOURNAL OF SYSTEMATICS AND EVOLUTION, v. 58, n. 1, p. 18-32, JAN 2020. (11/50859-2, 12/50260-6)

FEITL, MELINA; KERN, ANDREA K.; JONES, AMANDA; FRITZ, SHERILYN C.; BAKER, PAUL A.; JOECKEL, R. M.; SALENBIEN, WOUT; WILLARD, DEBRA. Paleoclimate of the subtropical Andes during the latest Miocene, Lauca Basin, Chile. PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY, v. 534, NOV 15 2019. (12/50260-6, 14/05582-0)

LEITE, RAFAEL N.; KIMBALL, REBECCA T.; BRAUN, EDWARD L.; DERRYBERRY, ELIZABETH P.; HOSNER, PETER A.; DERRYBERRY, GRAHAM E.; ANCIAES, MARINA; MCKAY, JESSICA S.; ALEIXO, ALEXANDRE; RIBAS, CAMILA C.; et al. Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness. Molecular Phylogenetics and Evolution, v. 155, FEB 2021. (16/08356-7, 12/50260-6)

RITTER, CAMILA D.; COELHO, LAIS A.; CAPURUCHO, JOAO M. G.; BORGES, SERGIO H.; CORNELIUS, CINTIA; RIBAS, CAMILA C.. Sister species, different histories: comparative phylogeography of two bird species associated with Amazonian open vegetation. Biological Journal of the Linnean Society, v. 132, n. 1, p. 161-173, JAN 2021. (09/53365-0, 12/50260-6)

RODRIGUES NOGUEIRA, AFONSO CESAR; AMORIM, KAMILLA BORGES; GOES, ANA MARIA; TRUCKENBRODT, WERNER; PETRI, SETEMBRINO; EVANGELISTA NOGUEIRA, ANNA ANDRESSA; BANDEIRA, JOSE; SOARES, JOELSON LIMA; BAIA, LOHAN BARBOSA; IMBIRIBA JUNIOR, MANOEL; et al. Upper Oligocene-Miocene deposits of Eastern Amazonia: Implications for the collapse of Neogene carbonate platforms along the coast of northern Brazil. PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY, v. 563, FEB 1 2021. (12/50260-6)

BROWER, ANDREW V. Z.. Background knowledge: the assumptions of pattern cladistics. CLADISTICS, v. 35, n. 6, p. 717-731, DEC 2019. (12/50260-6)

AKABANE, THOMAS KENJI; SAWAKUCHI, ANDRE OLIVEIRA; CHIESSI, CRISTIANO MAZUR; KERN, ANDREA K.; DIAZ PINAYA, JORGE LUIZ; TAPIAS CECCANTINI, GREGORIO CARDOSO; DE OLIVEIRA, PAULO EDUARDO. Modern pollen signatures of Amazonian rivers and new insights for environmental reconstructions. PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY, v. 554, SEP 15 2020. (12/50260-6, 11/06609-1, 18/15123-4)

BARBOSA, EDUARDO P.; AGUIAR, TAMARA M. C.; ROSA, AUGUSTO H. B.; ZACCA, THAMARA; FREITAS, ANDRE V. L.. A new species of butterfly (Lepidoptera: Nymphalidae) from the highlands of Southeastern Brazil. Zootaxa, v. 4819, n. 1, p. 128-142, JUL 22 2020. (17/02264-6, 11/50225-3, 12/50260-6, 13/50297-0)

MOTA, LUISA L.; KAMINSKI, LUCAS A.; FREITAS, ANDRE V. L.. The tortoise caterpillar: carnivory and armoured larval morphology of the metalmark butterflyPachythone xanthe(Lepidoptera: Riodinidae). Journal of Natural History, v. 54, n. 5-6, p. 309-319, FEB 1 2020. (12/50260-6, 11/50225-3)

BERV, JACOB S.; CAMPAGNA, LEONARDO; FEO, TERESA J.; CASTRO-ASTOR, IVANDY; RIBAS, CAMILA C.; PRUM, RICHARD O.; LOVETTE, IRBY J.. Genomic phylogeography of the White-crowned Manakin Pseudopipra pipra (Aves: Pipridae) illuminates a continental-scale radiation out of the Andes. Molecular Phylogenetics and Evolution, v. 164, NOV 2021. (12/50260-6)

SATO, HIROMITSU; KELLEY, I, DOUGLAS; MAYOR, STEPHEN J.; CALVO, MARIA MARTIN; COWLING, SHARON A.; PRENTICE, IAIN COLIN. Dry corridors opened by fire and low CO2 in Amazonian rainforest during the Last Glacial Maximum. NATURE GEOSCIENCE, v. 14, n. 8, p. 578+, AUG 2021. (12/50260-6)

KAEHLER, MIRIAM; MICHELANGELI, FABIAN A.; LOHMANN, LUCIA G.. Fine tuning the circumscription of Fridericia (Bignonieae, Bignoniaceae). Taxon, v. 68, n. 4, p. 751-770, AUG 2019. (12/50260-6, 11/50859-2)

MEYER, LEILA; DINIZ-FILHO, JOSE ALEXANDRE F.; LOHMANN, LUCIA G.; HORTAL, JOAQUIN; BARRETO, ELISA; RANGEL, THIAGO; KISSLING, W. DANIEL. Canopy height explains species richness in the largest clade of Neotropical lianas. GLOBAL ECOLOGY AND BIOGEOGRAPHY, v. 29, n. 1, p. 26-37, JAN 2020. (12/50260-6)

CALIO, MARIA FERNANDA; THODE, VERONICA A.; BACON, CHRISTINE D.; SILVESTRO, DANIELE; ANTONELLI, ALEXANDRE; LOHMANN, LUCIA G.. Spatio-temporal evolution of the catuaba clade in the Neotropics: Morphological shifts correlate with habitat transitions. Journal of Biogeography, v. 49, n. 6, p. 13-pg., 2022-04-26. (09/52161-2, 13/10262-2, 11/50859-2, 10/51755-3, 12/50260-6, 18/23899-2)

FRAZAO, ANNELISE; LOHMANN, LUCIA G.. Taxonomic placement of Tanaecium mutabile (Bignonieae, Bignoniaceae) based on new morphological data and phylogenetic analyses. PHYTOTAXA, v. 438, n. 5, p. 289-300, APR 14 2020. (15/10914-5, 12/50260-6, 11/50859-2, 18/11110-5)

BATISTA, ROMINA; OLSSON, URBAN; ANDERMANN, TOBIAS; ALEIXO, ALEXANDRE; RIBAS, CAMILA CHEREM; ANTONELLI, ALEXANDRE. Phylogenomics and biogeography of the world's thrushes (Aves, Turdus): new evidence for a more parsimonious evolutionary history. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, v. 287, n. 1919, JAN 29 2020. (12/50260-6)

KERN, ANDREA K.; GROSS, MARTIN; GALEAZZI, CRISTIANO P.; PUPIM, FABIANO N.; SAWAKUCHI, ANDRE O.; ALMEIDA, RENATO P.; PILLER, WERNER E.; KUHLMANN, GABRIEL G.; BASEI, MIGUEL A. S.. Re-investigating Miocene age control and paleoenvironmental reconstructions in western Amazonia (northwestern Solimoes Basin, Brazil). PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY, v. 545, MAY 1 2020. (17/06874-3, 14/23334-4, 14/05582-0, 12/50260-6)

THOM, GREGORY; RIBAS, CAMILA C.; SHULTZ, EDUARDO; ALEIXO, ALEXANDRE; MIYAKI, CRISTINA Y.. Population dynamics of Amazonian floodplain forest species support spatial variation on genetic diversity but not range expansions through time. Journal of Biogeography, v. 49, n. 10, p. 11-pg., 2022-09-08. (14/00113-2, 13/50297-0, 15/12551-7, 17/25720-7, 12/50260-6, 18/17869-3)

BOUBLI, JEAN P.; JANIAK, MAREIKE C.; PORTER, LEILA M.; DE LA TORRE, STELLA; CORTES-ORTIZ, LILIANA; DA SILVA, MARIA N. F.; RYLANDS, ANTHONY B.; NASH, STEPHEN; BERTUOL, FABRICIO; BYRNE, HAZEL; et al. ncient DNA of the pygmy marmoset type specimen Cebuella pygmaea (Spix, 1823) resolves a taxonomic conundru. ZOOLOGICAL RESEARCH, v. 42, n. 6, p. 761-771, NOV 18 2021. (12/50260-6)

MEYER, LEILA; KISSLING, W. DANIEL; LOHMANN, LUCIA G.; HORTAL, JOAQUIN; DINIZ-FILHO, JOSE ALEXANDRE F.. Deconstructing species richness-environment relationships in Neotropical lianas. Journal of Biogeography, v. 47, n. 10, AUG 2020. (12/50260-6)

FREITAS, ANDRE V. L.; BARBOSA, EDUARDO P.; ZACCA, THAMARA; MARIN, MARIO ALEJANDRO; BEIRAO, MARINA, V; SILVA, ANDRE R. M.; CASAGRANDE, MIRNA M.; ESPELAND, MARIANNE; WILLMOTT, KEITH R.. Before it is too late: description of a new genus and species of butterfly from a highly threatened Brazilian biome. Revista Brasileira de Entomologia, v. 62, n. 2, p. 11-pg., 2018-04-01. (17/02264-6, 13/50297-0, 12/50260-6, 14/16481-0, 11/50225-3, 16/15873-8)

ALMEIDA, GILBERTO S. S.; RABY, RICHARD; MAGALDI, LUIZA MORAES; LUCCI FREITAS, ANDRE VICTOR. A NEW RECORD FOR THE RARE ATLANTIC FOREST ENDEMIC BUTTERFLY ADELPHA ATLANTICA (NYMPHALIDAE: LIMENITIDINAE). JOURNAL OF THE LEPIDOPTERISTS' SOCIETY, v. 72, n. 3, p. 249+, SEP 2018. (11/50225-3, 12/50260-6)

KAEHLER, MIRIAM; LOHMANN, LUCIA G.. Taxonomic Revision of Xylophragma (Bignonieae, Bignoniaceae). SYSTEMATIC BOTANY, v. 45, n. 3, p. 620-637, JUL-SEP 2020. (11/50859-2, 12/50260-6)

HAGGI, CHRISTOPH; SCHEFUSS, ENNO; SAWAKUCHI, ANDRE O.; CHIESSI, CRISTIANO M.; MULITZA, STEFAN; BERTASSOLI JR, DAILSON J.; HEFTER, JENS; ZABEL, MATTHIAS; BAKER, PAUL A.; SCHOUTEN, STEFAN. Modern and late Pleistocene particulate organic carbon transport by the Amazon River: Insights from long-chain alkyl diols. GEOCHIMICA ET COSMOCHIMICA ACTA, v. 262, p. 1-19, OCT 1 2019. (16/11141-2, 12/17517-3, 12/50260-6)

RIBAS, CAMILA C.; ALEIXO, ALEXANDRE. Diversity and evolution of Amazonian birds: implications for conservation and biogeography. Anais da Academia Brasileira de Ciências, v. 91, n. 3, 2019. (12/50260-6)

BROWER, ANDREW V. Z.. Alternative facts: a reconsideration of putatively natural interspecific hybrid specimens in the genus Heliconius (Lepidoptera: Nymphalidae). Zootaxa, v. 4499, n. 1, p. 1-87, OCT 12 2018. (12/50260-6)

FREITAS, A. V. L.; RAMOS, R. R.; SILVA-BRANDAO, K. L.; COUTOUNE, N.; MAGALDI, L. M.; PABLOS, J. L.; ROSSER, N.; BROWN, JR., K. S.. A New Subspecies of Heliconius hermathena (Nymphalidae: Heliconiinae) from Southern Amazonia. Neotropical Entomology, v. 48, n. 3, p. 467-475, JUN 2019. (11/50225-3, 12/50260-6, 12/16266-7)

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ZUNTINI, ALEXANDRE R.; FONSECA, LUIZ HENRIQUE M.; LOHMANN, LUCIA G.. PRIMERS FOR PHYLOGENY RECONSTRUCTION IN BIGNONIEAE (BIGNONIACEAE) USING HERBARIUM SAMPLES. APPLICATIONS IN PLANT SCIENCES, v. 1, n. 9, SEP 2013. (12/50260-6, 09/12508-3, 11/50859-2, 11/09160-5)

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FONSECA, LUIZ HENRIQUE M.; CARLSEN, MONICA M.; FINE, PAUL V. A.; LOHMANN, LUCIA G.. A nuclear target sequence capture probe set for phylogeny reconstruction of the charismatic plant family Bignoniaceae. FRONTIERS IN GENETICS, v. 13, p. 16-pg., 2023-01-09. (18/23899-2, 12/50260-6, 11/09160-5)

TALAVERA, GERARD; KAMINSKI, LUCAS A.; FREITAS, ANDRE V. L.; VILA, ROGER. One-note samba: the biogeographical history of the relict Brazilian butterfly Elkalyce cogina. Journal of Biogeography, v. 43, n. 4, p. 727-737, APR 2016. (13/50297-0, 11/50225-3, 12/50260-6)

JUAN M. GUAYASAMIN; CAMILA C. RIBAS; ANA C. CARNAVAL; JUAN D. CARRILLO; CARINA HOORN; LÚCIA G. LOHMANN; DOUGLAS RIFF; CARMEN ULLOA ULLOA; JAMES S. ALBERT. Evolution of Amazonian biodiversity: A review. Acta Amazonica, v. 54, 2024-05-03. (18/23899-2, 12/50260-6)

LARISSA A. DE MEDEIROS; EDUARDO GENTIL; IGOR L. KAEFER; MARIO COHN-HAFT. Distribution and diversification of Adelphobates, emblematic poison frogs from Brazilian Amazonia. Anais da Academia Brasileira de Ciências, v. 96, n. 1, 2024-04-19. (12/50260-6)

ZENKER, MAURICIO M.; WAHLBERG, NIKLAS; BREHM, GUNNAR; TESTON, JOSE A.; PRZYBYLOWICZ, LUKASZ; PIE, MARCIO R.; FREITAS, ANDRE V. L.. Systematics and origin of moths in the subfamily Arctiinae (Lepidoptera, Erebidae) in the Neotropical region. ZOOLOGICA SCRIPTA, v. 46, n. 3, p. 348-362, MAY 2017. (13/50297-0, 14/06646-2, 11/50225-3, 13/09647-7, 12/50260-6)

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CHAZOT, NICOLAS; DE-SILVA, DONNA LISA; WILLMOTT, KEITH R.; FREITAS, ANDRE V. L.; LAMAS, GERARDO; MALLET, JAMES; GIRALDO, CARLOS E.; URIBE, SANDRA; ELIAS, MARIANNE. Contrasting patterns of Andean diversification among three diverse clades of Neotropical clearwing butterflies. ECOLOGY AND EVOLUTION, v. 8, n. 8, p. 3965-3982, APR 2018. (13/50297-0, 11/50225-3, 12/50260-6)

MARIN, MARIO A.; PENA, CARLOS; URIBE, SANDRA I.; FREITAS, ANDRE V. L.. Morphology agrees with molecular data: phylogenetic affinities of Euptychiina butterflies (Nymphalidae: Satyrinae). Systematic Entomology, v. 42, n. 4, p. 768-785, OCT 2017. (13/50297-0, 11/50225-3, 12/50260-6, 14/16481-0)

SEIXAS, RANY R.; SANTOS, SUZANE E.; OKADA, YUKARI; FREITAS, ANDRE V. L.. POPULATION BIOLOGY OF THE SAND FOREST SPECIALIST BUTTERFLY HELICONIUS HERMATHENA HERMATHENA (HEWITSON) (NYMPHALIDAE: HELICONIINAE) IN CENTRAL AMAZONIA). JOURNAL OF THE LEPIDOPTERISTS' SOCIETY, v. 71, n. 3, p. 133-140, SEP 2017. (11/50225-3, 12/50260-6)

FONSECA, LUIZ HENRIQUE M.; LOHMANN, LUCIA G.. Adenocalymma cauliflorum (Bignonieae, Bignoniaceae), a New Cauliflorous Species from the Atlantic Forest of Eastern Brazil. SYSTEMATIC BOTANY, v. 42, n. 3, p. 584-589, JUL-SEP 2017. (13/50297-0, 11/50859-2, 12/50260-6)

FONSECA, LUIZ HENRIQUE M.; ZUNTINI, ALEXANDRE R.; LOHMANN, LUCIA G.. Two new species of Adenocalymma (Bignonieae, Bignoniaceae) from the Atlantic Forest of Brazil. PHYTOTAXA, v. 284, n. 4, p. 263-272, NOV 18 2016. (13/50297-0, 11/50859-2, 12/50260-6)

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BOUBLI, JEAN P.; BYRNE, HAZEL; DA SILVA, MARIA N. F.; SILVA-JUNIOR, JOSE; ARAUJO, RODRIGO COSTA; BERTUOL, FABRICIO; GONCALVES, JONAS; DE MELO, FABIANO R.; RYLANDS, ANTHONY B.; MITTERMEIER, RUSSELL A.; et al. On a new species of titi monkey (Primates: Plecturocebus Byrne et al., 2016), from Alta Floresta, southern Amazon, Brazil. Molecular Phylogenetics and Evolution, v. 132, p. 117-137, MAR 2019. (12/50260-6)

BROWER, ANDREW V. Z.; GARZON-ORDUNA, IVONNE J.. Missing data, clade support and ``reticulation{''}: the molecular systematics of Heliconius and related genera (Lepidoptera: Nymphalidae) re-examined. CLADISTICS, v. 34, n. 2, p. 151-166, APR 2018. (12/50260-6)

FRAZAO, ANNELISE; LOHMAN, LUCIA G.. An updated synopsis of Tanaecium (Bignonieae, Bignoniaceae). PHYTOKEYS, n. 132, p. 31-52, SEP 26 2019. (15/10914-5, 12/50260-6, 11/50859-2, 18/11110-5)

MUSHER, LUKAS J.; FERREIRA, MATEUS; AUERBACH, ANYA L.; MCKAY, JESSICA; CRACRAFT, JOEL. Why is Amazonia a `source' of biodiversity? Climate-mediated dispersal and synchronous speciation across the Andes in an avian group (Tityrinae). PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, v. 286, n. 1900, APR 3 2019. (12/50260-6)

MORAES, SIMEAO DE SOUZA; MURILLO-RAMOS, LEIDYS; MACHADO, PATRICIA A.; GHANAVI, HAMID R.; MAGALDI, LUIZA M.; SILVA-BRANDAO, KARINA L.; KATO, MASSUO J.; FREITAS, ANDRE V. L.; WAHLBERG, NIKLAS. A double-edged sword: Unrecognized cryptic diversity and taxonomic impediment in Eois (Lepidoptera, Geometridae). ZOOLOGICA SCRIPTA, APR 2021. (15/24663-4, 15/17047-5, 13/50297-0, 11/50225-3, 16/20196-5, 12/50260-6)

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FREITAS, ANDRE V. L.; BARBOSA, EDUARDO P.; ZACCA, THAMARA; MARIN, MARIO ALEJANDRO; BEIRAO, V, MARINA; SILVA, ANDRE R. M.; CASAGRANDE, MIRNA M.; ESPELAND, MARIANNE; WILLMOTT, KEITH R.. Before it is too late: description of a new genus and species of butterfly from a highly threatened Brazilian biome. Revista Brasileira de Entomologia, v. 62, n. 2, p. 148-158, APR-JUN 2018. (14/16481-0, 12/50260-6, 16/15873-8, 11/50225-3, 17/02264-6, 13/50297-0)

BROWER, ANDREW V. Z.. Statistical consistency and phylogenetic inference: a brief review. CLADISTICS, v. 34, n. 5, p. 562-567, OCT 2018. (12/50260-6)

NAZARENO, ALISON G.; BEMMELS, JORDAN B.; DICK, CHRISTOPHER W.; LOHMANN, LUCIA G.. Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species. MOLECULAR ECOLOGY RESOURCES, v. 17, n. 6, p. 1136-1147, NOV 2017. (15/07141-4, 13/12633-8, 12/50260-6)

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SILVA, FELIPE E.; COSTA-ARAUJO, RODRIGO; BOUBLI, JEAN P.; SANTANA, MARCELO I.; FRANCO, CAETANO L. B.; BERTUOL, FABRICIO; NUNES, HERMANO; SILVA-JUNIOR, JOSE DE SOUZA; FARIAS, IZENI; HRBEK, TOMAS. In search of a meaningful classification for Amazonian marmosets: Should dwarf marmosets be considered Mico congenerics?. ZOOLOGICA SCRIPTA, v. 47, n. 2, p. 133-143, MAR 2018. (12/50260-6)

BOUBLI, JEAN P.; DA SILVA, MARIA N. F.; RYLANDS, ANTHONY B.; NASH, STEPHEN D.; BERTUOL, FABRICIO; NUNES, MARIO; MITTERMEIER, RUSSELL A.; BYRNE, HAZEL; SILVA, FELIPE E.; ROHE, FABIO; et al. How many pygmy marmoset (Cebuella Gray, 1870) species are there? A taxonomic re-appraisal based on new molecular evidence. Molecular Phylogenetics and Evolution, v. 120, p. 170-182, MAR 2018. (12/50260-6)

CARNEIRO, LINCOLN; BRAVO, GUSTAVO A.; ARISTIZABAL, NATALIA; CUERVO, ANDRES M.; ALEIXO, ALEXANDRE. Molecular systematics and biogeography of lowland antpittas (Aves, Grallariidae): The role of vicariance and dispersal in the diversification of a widespread Neotropical lineage. Molecular Phylogenetics and Evolution, v. 120, p. 375-389, MAR 2018. (12/50260-6)

NOVELLO, VALDIR F.; CRUZ, FRANCISCO W.; VUILLE, MATHIAS; STRIKIS, NICOLAS M.; EDWARDS, R. LAWRENCE; CHENG, HAI; EMERICK, SUELLYN; DE PAULA, MARCOS S.; LI, XIANGLEI; BARRETO, ELINE DE S.; et al. A high-resolution history of the South American Monsoon from Last Glacial Maximum to the Holocene. SCIENTIFIC REPORTS, v. 7, MAR 10 2017. (12/03942-4, 16/15807-5, 14/10095-1, 15/08351-2, 09/12902-3, 12/50260-6, 16/00299-4, 12/01187-4)

SHIRAI, LEILA T.; BARBOSA, EDUARDO P.; GREVE, ROBERTO R.; MAGALDI, LUIZA M.; NASCIMENTO, ANDRE R.; FREITAS, ANDRE V. L.. Natural History of Selenophanes cassiope guarany (Lepidoptera: Nymphalidae: Brassolini): an Integrative Approach, From Molecules to Ecology. Annals of the Entomological Society of America, v. 110, n. 2, p. 145-159, MAR 2017. (13/50297-0, 15/17046-9, 11/50225-3, 15/24663-4, 12/03750-8, 12/50260-6, 14/23504-7)

KAEHLER, MIRIAM. A new species of Xylophragma (Bignoniaceae) from Brazilian dry-areas. BRITTONIA, v. 69, n. 1, p. 96-99, MAR 2017. (12/50260-6, 11/50859-2)

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FERREIRA, GILMAX GONCALVES; ALEIXO, ALEXANDRE; SILVA, SOFIA MARQUES. Systematic review of the Cinnamon-throated Woodcreeper Dendrexetastes rufigula (Aves: Dendrocolaptidae) based on a multilocus phylogeography. REVISTA BRASILEIRA DE ORNITOLOGIA, v. 24, n. 4, p. 358-369, DEC 2016. (12/50260-6)

LIMA, MARCELA G. M.; BUCKNER, JANET C.; DE SOUSA E SILVA-JUNIOR, JOSE; ALEIXO, ALEXANDRE; MARTINS, AMELY B.; BOUBLI, JEAN P.; LINK, ANDRES; FARIAS, IZENI P.; DA SILVA, MARIA NAZARETH; ROHE, FABIO; et al. Capuchin monkey biogeography: understanding Sapajus Pleistocene range expansion and the current sympatry between Cebus and Sapajus. Journal of Biogeography, v. 44, n. 4, p. 810-820, APR 2017. (12/50260-6)

FILGUEIRAS, BRUNO K. C.; MELO, DOUGLAS H. A.; UEHARA-PRADO, MARCIO; FREITAS, ANDRE VICTOR L.; LEAL, INARA R.; TABARELLI, MARCELO. Compensatory dynamics on the community structure of fruit-feeding butterflies across hyper-fragmented Atlantic forest habitats. ECOLOGICAL INDICATORS, v. 98, p. 276-284, MAR 2019. (11/50225-3, 12/50260-6)

NOVELLO, VALDIR F.; VUILLE, MATHIAS; CRUZ, FRANCISCO W.; STRKIS, NICOLAS M.; DE PAULA, MARCOS SAITO; EDWARDS, R. LAWRENCE; CHENG, HAI; KARMANN, IVO; JAQUETO, PLNIO F.; TRINDADE, RICARDO I. F.; et al. Centennial-scale solar forcing of the South American Monsoon System recorded in stalagmites. SCIENTIFIC REPORTS, v. 6, APR 21 2016. (14/10095-1, 12/03942-4, 15/08351-2, 12/01187-4, 12/50260-6, 09/12902-3)

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LÚCIA G. LOHMANN; FABIANA FIRETTI; BEATRIZ M. GOMES. Flora das cangas da Serra dos Carajás, Pará, Brasil: Bignoniaceae. Rodriguésia, v. 69, n. 3, p. 1063-1079, 2018-09-00. (11/50859-2, 12/50260-6)

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GARZON-ORDUNA, IVONNE J.; BENETTI-LONGHINI, JENNIFER E.; BROWER, ANDREW V. Z.. Timing the diversification of the Amazonian biota: butterfly divergences are consistent with Pleistocene refugia. Journal of Biogeography, v. 41, n. 9, p. 1631-1638, SEP 2014. (12/50260-6)

NAZARENO, ALISON GONCALVES; CARLSEN, MONICA; LOHMANN, LUCIA GARCEZ. Complete Chloroplast Genome of Tanaecium tetragonolobum: The First Bignoniaceae Plastome. PLoS One, v. 10, n. 6, JUN 23 2015. (13/12633-8, 11/50859-2, 12/50260-6)

FIRETTI-LEGGIERI, FABIANA; DEMARCO, DIEGO; LOHMANN, LUCIA G.. A new species of Anemopaegma (Bignonieae, Bignoniaceae) from the Atlantic Forest of Brazil. PHYTOTAXA, v. 219, n. 2, p. 174-182, JUL 8 2015. (13/50297-0, 11/50859-2, 12/50260-6)

ZUNTINI, ALEXANDRE R.; TAYLOR, CHARLOTTE M.; LOHMANN, LUCIA G.. Deciphering the Neotropical Bignonia binata species complex (Bignoniaceae). PHYTOTAXA, v. 219, n. 1, p. 69-77, JUL 7 2015. (12/50260-6, 13/08657-9, 11/50859-2, 11/09160-5)

BROWER, ANDREW V. Z.. Rethinking Tree-Thinking: Cladograms, Ancestors & Evidence. AMERICAN BIOLOGY TEACHER, v. 78, n. 5, p. 380-384, MAY 2016. (12/50260-6)

CHOUERI, ERIK L.; GUBILI, CHRYSOULA; BORGES, SERGIO H.; THOM, GREGORY; SAWAKUCHI, ANDRE O.; SOARES, EMILIO A. A.; RIBAS, CAMILA C.. Phylogeography and population dynamics of Antbirds (Thamnophilidae) from Amazonian fluvial islands. Journal of Biogeography, v. 44, n. 10, p. 2284-2294, OCT 2017. (15/12551-7, 14/00113-2, 11/06609-1, 12/50260-6)

CHAZOT, NICOLAS; WILLMOTT, KEITH R.; CONDAMINE, FABIEN L.; DE-SILVA, DONNA LISA; FREITAS, ANDRE V. L.; LAMAS, GERARDO; MORLON, HELENE; GIRALDO, CARLOS E.; JIGGINS, CHRIS D.; JORON, MATHIEU; et al. Into the Andes: multiple independent colonizations drive montane diversity in the Neotropical clearwing butterflies Godyridina. Molecular Ecology, v. 25, n. 22, p. 5765-5784, NOV 2016. (13/50297-0, 11/50225-3, 12/50260-6)

FRANCISCO, JESSICA N. C.; NAZARENO, ALISON G.; LOHMANN, LUCIA G.. A GENOMIC APPROACH FOR ISOLATING CHLOROPLAST MICROSATELLITE MARKERS FOR PACHYPTERA KERERE (BIGNONIACEAE). APPLICATIONS IN PLANT SCIENCES, v. 4, n. 9, SEP 2016. (13/12633-8, 12/50260-6, 11/50859-2)

THODE, VERONICA A.; SANMARTIN, ISABEL; LOHMANN, LUCIA G.. Contrasting patterns of diversification between Amazonian and Atlantic forest clades of Neotropical lianas (Amphilophium, Bignonieae) inferred from plastid genomic data. Molecular Phylogenetics and Evolution, v. 133, p. 92-106, APR 2019. (09/12508-3, 15/26884-8, 13/11706-1, 17/12797-1, 12/50260-6)

RODRIGUES NOGUEIRA, AFONSO CESAR; SILVEIRA, ROSEMERY; FELIX GUIMARAES, JOSE TASSO. Neogene-Quaternary sedimentary and paleovegetation history of the eastern Solimoes Basin, central Amazon region. Journal of South American Earth Sciences, v. 46, p. 89-99, OCT 2013. (12/50260-6)

MUSHER, LUKAS J.; GALANTE, PETER J.; THOM, GREGORY; HUNTLEY, JERRY W.; BLAIR, MARY E.. Shifting ecosystem connectivity during the Pleistocene drove diversification and gene-flow in a species complex of Neotropical birds (Tityridae: Pachyramphus). Journal of Biogeography, v. 47, n. 8, APR 2020. (12/50260-6, 18/17869-3, 17/25720-7)

CARVALHO FRANCISCO, JESSICA NAYARA; LOHMANN, LUCIA G.. Phylogeny and Biogeography of the Amazonian Pachyptera (Bignonieae, Bignoniaceae). SYSTEMATIC BOTANY, v. 45, n. 2, p. 361-374, APR-JUN 2020. (12/50260-6, 11/50859-2)

NARVAEZ-GOMEZ, JUAN PABLO; SZUMIK, CLAUDIA A.; GOLOBOFF, PABLO A.; LOHMANN, LUCIA G.. Unravelling distribution patterns of Neotropical lianas: an analysis of endemicity of tribe Bignonieae (Bignoniaceae). Botanical Journal of the Linnean Society, v. 199, n. 1, p. 26-pg., 2021-12-23. (18/23899-2, 12/50260-6)

FRAZAO, ANNELISE; LOHMANN, LUCIA G.; COSTA, ELLENHISE RIBEIRO; DEMARCO, DIEGO. Structure of long -tubed white corollas: A case study from the trumpet-creeper family (Bignoniaceae). FLORA, v. 268, JUL 2020. (11/50859-2, 18/11110-5, 12/50260-6, 15/10914-5)

GOMES, BEATRIZ M.; FONSECA, LUIZ HENRIQUE M.; LOHMANN, LUCIA G.; PROENCA, CAROLYN E. B.. Adenocalymma albiflorum(Bignonieae, Bignoniaceae), a new combination, notes on morphology and distribution. BRITTONIA, v. 72, n. 3, p. 317-323, SEP 2020. (11/50859-2, 12/50260-6, 13/50297-0)

THODE, VERONICA A.; LOHMANN, LUCIA G.; SANMARTIN, ISABEL. Evaluating character partitioning and molecular models in plastid phylogenomics at low taxonomic levels: A case study using Amphilophium (Bignonieae, Bignoniaceae). JOURNAL OF SYSTEMATICS AND EVOLUTION, v. 58, n. 6, SI, p. 1071-1089, NOV 2020. (11/50859-2, 15/26884-8, 13/11706-1, 12/50260-6)

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