Representações intermediárias em Ciência Computacional para descoberta de conhecimento

• Processo: 15/22308-2
• Modalidade de apoio: Auxílio à Pesquisa - Temático
• Vigência: 01 de novembro de 2017 - 31 de outubro de 2023
• Área do conhecimento: Ciências Exatas e da Terra - Ciência da Computação - Metodologia e Técnicas da Computação
• Pesquisador responsável: Roberto Marcondes Cesar Junior
• Beneficiário: Roberto Marcondes Cesar Junior
• Instituição Sede: Instituto de Matemática e Estatística (IME). Universidade de São Paulo (USP). São Paulo , SP, Brasil
• Pesquisadores principais: Carlos Alberto Moreira Filho ; Luciano da Fontoura Costa ; Nina Sumiko Tomita Hirata ; Ronaldo Fumio Hashimoto
• Pesquisadores associados: Cesar Henrique Comin ; Edson Amaro Junior ; Fernanda Bernardi Bertonha ; Marcel Parolin Jackowski ; Maria da Graca Campos Pimentel ; Roberto Hirata Junior ; Ronaldo Fumio Hashimoto ; Silvia Yumi Bando Takahara ; Valeria Meirelles Carril Elui
• Auxílios(s) vinculado(s): 20/06160-3 - Resposta transcricional de leucócitos humanos à infecção por SARS-CoV-2, AP.R; 18/17421-2 - 2018 IEEE International Conference on Image Processing, AR.EXT
• Bolsa(s) vinculada(s): 23/02619-0 - Redes neurais convolucionais e transformers visuais aplicados à detecção de doenças em imagens de folhas de plantas, BP.IC; 22/14286-2 - Classificação de espécies de aranha utilizando Transformers Visuais e Redes Convolucionais, BP.IC; 22/12204-9 - Desenvolvimento de métodos para descrição de imagens: um arcabouço baseado em visão computacional e processamento de linguagem natural, BP.PD; + mais bolsas vinculadas 22/10478-4 - Administrador da Cyberinfraestrutura do Projeto, BP.TT; 22/11645-1 - Classificação de estrelas, galáxias e quasares baseada em imagens fotométricas multibandas, BP.IC; 21/09070-8 - Modelagem, análise e inferência de redes biológicas, BP.PD; 21/07112-5 - Modelando o conhecimento por redes complexas, BP.IC; 20/13255-0 - Algoritmos para aquisição, formação e anotação de imagens de sensoriamento remoto, BP.TT; 20/13275-1 - Administrador da cyberinfraestrutura do projeto, BP.TT; 20/06744-5 - Deep learning e representações intermediárias para análise de imagens pediátricas, BP.PD; 19/23343-7 - Análise temporal da expressão gênica, BP.PD; 19/01077-3 - Integrando imagens e redes complexas na análise de cidades, BP.PD; 19/04219-3 - Administrador da cyberinfraestrutura do projeto, BP.TT; 19/06280-1 - Integração, transformação, aumento de dados e controle de qualidade para representações intermediárias, BP.PD; 19/06254-0 - Reconhecimento estrutural de padrões e representações intermediárias, BP.PD; 18/10489-0 - Transformações de redes complexas e suas implicações na topologia e dinâmica de sistemas complexos, BP.PD; 18/00390-7 - Detecção de códigos QR usando modelos de aprendizado profundo, BP.MS; 18/00477-5 - Aprendizado de transformações imagem-a-imagem, BP.MS; 18/07386-5 - Segmentação de imagens de ressonância magnética neonatal: uma abordagem estrutural, BP.MS - menos bolsas vinculadas
• Assunto(s): Visão computacional Aprendizado computacional Processamento de imagens Biologia de sistemas Reconhecimento de padrões
• Palavra(s)-Chave do Pesquisador: Aprendizado de Máquina | biologia de sistemas | eScience | Processamento de imagens | Reconhecimento de Padrões | Visão Computacional | Reconhecimento de padrões

Resumo

Este projeto centra-se em uma estratégia unificada para descoberta de conhecimento e dinâmicas emergentes em Ciência Computacional usando representações intermediárias. As aplicações pretendidas estão em áreas caracterizadas por extrema abundância de dados, nas quais a descoberta de conhecimento implica na transição das bases de dados brutos para representações intermediárias, usualmente vetores de características e grafos, permitindo assim o emprego subsequente de diferentes métodos analíticos. Nesse contexto, os métodos de integração e transformação a serem utilizados na geração dos dados intermediários também devem garantir a qualidade e confiabilidade dos dados gerados para a representação intermediária. Os resultados da fase de análise podem influenciar tanto os métodos de integração como experimentos para nova geração de dados através de mecanismos de feedback. O presente projeto possui dois objetivos gerais: 1) desenvolver métodos originais para resolver problemas de Ciência Computacional baseadas em uma abordagem comum de representações intermediárias; 2) aplicar os métodos desenvolvidos em problemas específicos. Essa estratégia metodológica será empregada para abordar problemas específicos em áreas de fronteira da Ciência, nos quais nosso grupo tem trabalhado nos últimos anos: representações intermediárias em visão computacional e informática urbana; estudo dinâmico de redes biológicas para caracterizar os mecanismos de transição saúde-doença; desenvolvimento de ferramentas computacionais para processamento de imagens de MRI de alto campo e sua integração com dados biológicos; desenvolvimento de novas técnicas para caracterização e visualização de representações intermediárias em redes complexas dinâmicas, com aplicações em Biologia de Sistemas. (AU)

Publicações científicas

(133)

(Referências obtidas automaticamente do Web of Science e do SciELO, por meio da informação sobre o financiamento pela FAPESP e o número do processo correspondente, incluída na publicação pelos autores)

DAZZI, ESTEPHAN; DE CAMPOS, TEOFILO; HILTON, ADRIAN; CESAR JR, ROBERTO M.. Scalable object instance recognition based on keygraph matching. PATTERN RECOGNITION LETTERS, v. 114, n. SI, p. 53-62, OCT 15 2018. (14/50769-1, 15/22308-2, 11/50761-2)

FERREIRA, GUSTAVO RODRIGUES; NAKAYA, HELDER IMOTO; COSTA, LUCIANO DA FONTOURA. Gene regulatory and signaling networks exhibit distinct topological distributions of motifs. Physical Review E, v. 97, n. 4, APR 27 2018. (14/19323-7, 12/19278-6, 15/22308-2)

SILVA, FILIPI N.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Malleability of complex networks. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, AUG 2019. (15/22308-2, 15/08003-4, 17/09280-7, 15/18942-8, 13/07375-0, 18/09125-4, 11/50761-2)

DOMINGUES, G. S.; SILVA, F. N.; COMIN, C. H.; COSTA, L. DA F.. Topological characterization of world cities. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, AUG 2018. (17/09280-7, 15/22308-2, 11/50761-2, 15/18942-8, 15/08003-4)

PERON, THOMAS; DE RESENDE, BRUNO MESSIAS F.; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.; MENDEZ-BERMUDEZ, J. A.. Spacing ratio characterization of the spectra of directed random networks. Physical Review E, v. 102, n. 6, DEC 10 2020. (13/07375-0, 16/23827-6, 15/22308-2, 19/06931-2, 16/25682-5)

RODRIGUES, FRANCISCO C. M.; ESPADOTO, MATEUS; HIRATA JR, ROBERTO; TELEA, ALEXANDRU C.. Constructing and Visualizing High-Quality Classifier Decision Boundary Maps dagger. INFORMATION, v. 10, n. 9, SEP 2019. (15/22308-2, 15/24485-9, 15/01587-0)

GEWERS, FELIPE L.; FERREIRA, GUSTAVO R.; DE ARRUDA, HENRIQUE F.; SILVA, FILIPI N.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.. Principal Component Analysis: A Natural Approach to Data Exploration. ACM COMPUTING SURVEYS, v. 54, n. 4, JUL 2021. (17/13464-6, 18/09125-4, 15/22308-2, 16/19069-9, 18/10489-0, 11/50761-2, 19/16223-5)

CERVANTES, EVELYN PEREZ; COMIN, CESAR HENRIQUE; CESAR JUNIOR, ROBERTO MARCONDES; COSTA, LUCIANO DA FONTOURA. Morphological Neuron Classification Based on Dendritic Tree Hierarchy. NEUROINFORMATICS, v. 17, n. 1, p. 147-161, JAN 2019. (15/22308-2, 15/18942-8)

DE ARRUDA, HENRIQUE F.; MARINHO, VANESSA Q.; COSTA, LUCIANO DA F.; AMANCIO, DIEGO R.. Paragraph-based representation of texts: A complex networks approach. INFORMATION PROCESSING & MANAGEMENT, v. 56, n. 3, p. 479-494, MAY 2019. (17/13464-6, 15/22308-2, 16/19069-9, 11/50761-2, 15/05676-8)

HIRATA, NINA S. T.; PAPAKOSTAS, GEORGE A.. On Machine-Learning Morphological Image Operators. MATHEMATICS, v. 9, n. 16, AUG 2021. (17/25835-9, 15/22308-2)

YAZDANPANAH, HAMED; APOLINARIO JR, JOSE A.. The Extended Feature LMS Algorithm: Exploiting Hidden Sparsity for Systems with Unknown Spectrum. CIRCUITS SYSTEMS AND SIGNAL PROCESSING, v. 40, n. 1, JUN 2020. (15/22308-2, 19/06280-1)

BANDO, SILVIA Y.; IAMASHITA, PRISCILA; SILVA, FILIPI N.; COSTA, LUCIANO DA F.; ABE, CECILIA M.; BERTONHA, FERNANDA B.; GUTH, BEATRIZ E. C.; FUJITA, ANDRE; MOREIRA-FILHO, CARLOS A.. Dynamic Gene Network Analysis of Caco-2 Cell Response to Shiga Toxin-Producing Escherichia coli-Associated Hemolytic-Uremic Syndrome. MICROORGANISMS, v. 7, n. 7, JUL 2019. (15/22308-2, 11/50761-2)

COMIN, CESAR H.; PERON, THOMAS; SILVA, FILIPI N.; AMANCIO, DIEGO R.; RODRIGUES, FRANCISCO A.; COSTA, LUCIANO DA F.. Complex systems: Features, similarity and connectivity. PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, v. 861, p. 1-41, MAY 25 2020. (15/22308-2, 15/08003-4, 16/23827-6, 18/09125-4, 16/19069-9, 14/20830-0, 13/26416-9)

LIM, MARKUS V. S.; DINIZ, PAULO S. R.; YAZDANPANAH, HAMED. Set-Membership Constrained Frequency-Domain Algorithm. IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS II-EXPRESS BRIEFS, v. 68, n. 2, p. 797-801, FEB 2021. (19/06280-1, 15/22308-2)

TOKUDA, ERIC K.; LOCKERMAN, YITZCHAK; FERREIRA, GABRIEL B. A.; SORRELGREEN, ETHAN; BOYLE, DAVID; CESAR-JR, ROBERTO M.; SILVA, CLAUDIO T.. A New Approach for Pedestrian Density Estimation Using Moving Sensors and Computer Vision Sensing the city. ACM TRANSACTIONS ON SPATIAL ALGORITHMS AND SYSTEMS, v. 6, n. 4, AUG 2020. (14/24918-0, 15/22308-2)

RODRIGUES, FRANCISCO C. M.; ESPADOTO, MATEUS; HIRATA JR, ROBERTO; TELEA, ALEXANDRU C.. Constructing and Visualizing High-Quality Classifier Decision Boundary Maps. INFORMATION, v. 10, n. 9, p. 22-pg., 2019-09-01. (15/01587-0, 15/24485-9, 15/22308-2)

YAZDANPANAH, HAMED. Improved feature least mean square algorithm. INTERNATIONAL JOURNAL OF ADAPTIVE CONTROL AND SIGNAL PROCESSING, v. N/A, p. 11-pg., 2022-11-17. (19/06280-1, 15/22308-2)

PIMENTA-ZANON, MATHEUS H.; DE SOUZA, VINICIUS AUGUSTO; HASHIMOTO, RONALDO FUMIO; LOPES, FABRICIO MARTINS; SWARNKAR, T; PATNAIK, S; MITRA, P; MISRA, S; MISHRA, M. Biological Sequence Analysis Using Complex Networks and Entropy Maximization: A Case Study in SARS-CoV-2. AMBIENT INTELLIGENCE IN HEALTH CARE, ICAIHC 2022, v. 317, p. 10-pg., 2023-01-01. (15/22308-2)

MONTEIRO, BRUNO A. A.; OLIVEIRA, HUGO; DOS SANTOS, JEFERSSON A.. Self-Supervised Learning for Seismic Image Segmentation From Few-Labeled Samples. IEEE Geoscience and Remote Sensing Letters, v. 19, p. 5-pg., 2022-01-01. (20/06744-5, 15/22308-2)

TOKUDA, ERIC K.; DE ARRUDA, HENRIQUE F.; COMIN, CESAR H.; JR, ROBERTO M. CESAR; SILVA, CLAUDIO T.; COSTA, LUCIANO DA F.. Spatial distribution of graffiti types: a complex network approach. European Physical Journal B, v. 94, n. 9, SEP 2021. (19/01077-3, 19/16223-5, 18/09125-4, 15/22308-2, 18/10489-0)

BANDO, SILVIA YUMI; IAMASHITA, PRISCILA; GUTH, BEATRIZ E.; DOS SANTOS, LUIS F.; FUJITA, ANDRE; ABE, CECILIA M.; FERREIRA, LEANDRO R.; MOREIRA-FILHO, CARLOS ALBERTO. A hemolytic-uremic syndrome-associated strain O113:H21 Shiga toxin-producing Escherichia coli specifically expresses a transcriptional module containing dicA and is related to gene network dysregulation in Caco-2 cells. PLoS One, v. 12, n. 12, DEC 18 2017. (11/50761-2, 15/22308-2)

SOUZA, PAULO J. P.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Topology and dynamics in complex networks: The role of edge reciprocity. EPL, v. 122, n. 2, APR 2018. (11/50761-2, 15/22308-2, 15/18942-8)

MOREIRA-FILHO, CARLOS ALBERTO; BANDO, SILVIA YUMI; BERTONHA, FERNANDA BERNARDI; FERREIRA, LEANDRO RODRIGUES; VINHAS, CHRISTIANA DE FREITAS; BOURGUIGNON OLIVEIRA, LUCILA HABIB; NOGUEIRA ZERBINI, MARIA CLAUDIA; FURLANETTO, GLAUCIO; CHACCUR, PAULO; CARNEIRO-SAMPAIO, MAGDA. Minipuberty and Sexual Dimorphism in the Infant Human Thymus. SCIENTIFIC REPORTS, v. 8, SEP 3 2018. (15/22308-2, 14/50489-9)

COSTA, LUCIANO DA F.; SILVA, FILIPI N.; COMIN, CESAR H.. A pattern recognition approach to transistor array parameter variance. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 499, p. 176-185, JUN 1 2018. (15/18942-8, 15/22308-2, 15/08003-4, 11/50761-2)

BANDO, SILVIA Y.; BERTONHA, FERNANDA B.; MENEZES, PEDRO H. N.; TAKAHARA, ANDRE K.; KHALED, NATHALIA A.; SANTOS, PAULA; JUNQUEIRA, MARA S.; CESAR, ROBERTO M.; MOREIRA-FILHO, CARLOS A.. Transcriptomic analysis reveals distinct adaptive molecular mechanism in the hippocampal CA3 from rats susceptible or not-susceptible to hyperthermia-induced seizures. SCIENTIFIC REPORTS, v. 13, n. 1, p. 18-pg., 2023-06-24. (15/22308-2)

FREITAS-ANDRADE, MOISES; COMIN, CESAR H.; VAN DYKEN, PETER; OUELLETTE, JULIE; RAMAN-NAIR, JOANNA; BLAKELEY, NICOLE; LIU, QING YAN; LECLERC, SONIA; PAN, YOULIAN; LIU, ZIYING; et al. Astroglial Hmgb1 regulates postnatal astrocyte morphogenesis and cerebrovascular maturation. NATURE COMMUNICATIONS, v. 14, n. 1, p. 20-pg., 2023-08-16. (21/12354-8, 15/22308-2)

LOURENCO, JOSE; BARROS, SILVIA C.; ZE-ZE, LIBIA; DAMINELI, DANIEL S. C.; GIOVANETTI, MARTA; OSORIO, HUGO C.; AMARO, FATIMA; HENRIQUES, ANA M.; RAMOS, FERNANDA; LUIS, TIAGO; et al. est Nile virus transmission potential in Portuga. COMMUNICATIONS BIOLOGY, v. 5, n. 1, JAN 10 2022. (15/22308-2, 19/23343-7, 20/06160-3)

RAMOS, P. L.; COSTA, L. F.; LOUZADA, F.; RODRIGUES, F. A.. Power laws in the Roman Empire: a survival analysis. ROYAL SOCIETY OPEN SCIENCE, v. 8, n. 7, JUL 28 2021. (15/22308-2, 13/07375-0, 17/25971-0)

CIBA, MANUEL; BESTEL, ROBERT; NICK, CHRISTOPH; DE ARRUDA, GUILHERME FERRAZ; PERON, THOMAS; HENRIQUE, COMIN CESAR; COSTA, LUCIANO DA FONTOURA; RODRIGUES, FRANCISCO APARECIDO; THIELEMANN, CHRISTIANE. Comparison of Different Spike Train Synchrony Measures Regarding Their Robustness to Erroneous Data From Bicuculline-Induced Epileptiform Activity. NEURAL COMPUTATION, v. 32, n. 5, p. 887-911, MAY 2020. (15/22308-2, 16/23827-6, 18/09125-4, 13/26416-9, 12/51301-8, 12/25219-2)

COSTA, LUCIANO DA FONTOURA. Autorrelation and cross-relation of graphs and networks. JOURNAL OF PHYSICS-COMPLEXITY, v. 3, n. 4, p. 15-pg., 2022-12-01. (15/22308-2)

NAKAZONO, L.; DE OLIVEIRA, C. MENDES; HIRATA, N. S. T.; JERAM, S.; QUEIROZ, C.; EIKENBERRY, STEPHEN S.; GONZALEZ, A. H.; ABRAMO, R.; OVERZIER, R.; ESPADOTO, M.; et al. On the discovery of stars, quasars, and galaxies in the Southern Hemisphere with S-PLUS DR2. Monthly Notices of the Royal Astronomical Society, v. 507, n. 4, p. 5847-5868, NOV 2021. (18/09165-6, 19/06766-1, 19/10923-5, 15/22308-2, 19/26492-3, 18/20977-2, 14/10566-4, 19/01312-2, 18/25671-9, 19/23388-0, 17/25835-9, 15/11442-0, 16/12331-0)

RIBEIRO PRIST, PAULA; REVERBERI TAMBOSI, LEANDRO; FILIPE MUCCI, LUIS; PINTER, ADRIANO; PEREIRA DE SOUZA, RENATO; DE LARA MUYLAERT, RENATA; ROGER RHODES, JONATHAN; HENRIQUE COMIN, CESAR; DA FONTOURA COSTA, LUCIANDO; LANG D'AGOSTINI, TATIANA; et al. Roads and forest edges facilitate yellow fever virus dispersion. JOURNAL OF APPLIED ECOLOGY, v. 59, n. 1, OCT 2021. (18/09125-4, 18/14389-0, 15/22308-2, 18/23364-1, 17/11666-0)

COMIN, CESAR H.; TSIRUKIS, I, DEMETRIOS; SUN, YE; XU, XIAOYIN. Quantification of retinal blood leakage in fundus fluorescein angiography in a retinal angiogenesis model. SCIENTIFIC REPORTS, v. 11, n. 1, OCT 6 2021. (15/22308-2, 18/09125-4)

BLANGER, LEONARDO; HIRATA, NINA S. T.; JIANG, XIAOYI; IEEE COMP SOC. Reducing the need for bounding box annotations in Object Detection using Image Classification data. 2021 34TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI 2021), v. N/A, p. 8-pg., 2021-01-01. (18/00390-7, 15/22308-2, 17/25835-9, 19/17312-1)

GUPTA, SHANTANU; HASHIMOTO, RONALDO F.. Dynamical Analysis of a Boolean Network Model of the Oncogene Role of lncRNA ANRIL and lncRNA UFC1 in Non-Small Cell Lung Cancer. BIOMOLECULES, v. 12, n. 3, p. 19-pg., 2022-03-01. (15/22308-2, 21/09070-8)

GUPTA, SHANTANU; SILVEIRA, DANER A.; HASHIMOTO, RONALDO E.; MOMBACH, JOSE CARLOS M.. A Boolean Model of the Proliferative Role of the lncRNA XIST in Non-Small Cell Lung Cancer Cells. BIOLOGY-BASEL, v. 11, n. 4, p. 14-pg., 2022-04-01. (15/22308-2, 21/09070-8)

DAZZI, ESTEPHAN; DE CAMPOS, TEOFILO; HILTON, ADRIAN; CESAR JR, ROBERTO M.. Scalable object instance recognition based on keygraph matching. PATTERN RECOGNITION LETTERS, v. 114, p. 10-pg., 2018-10-15. (14/50769-1, 11/50761-2, 15/22308-2)

DAMINELI, DANIEL S. C.; PORTES, MARIA TERESA; FEIJO, JOSE A.. Electrifying rhythms in plant cells. CURRENT OPINION IN CELL BIOLOGY, v. 77, p. 11-pg., 2022-07-06. (19/23343-7, 21/05363-0, 19/26129-6, 15/22308-2)

BRITO, ANA C. M.; SILVA, FILIPI N.; DE ARRUDA, HENRIQUE F.; COMIN, CESAR H.; AMANCIO, DIEGO R.; COSTA, LUCIANO DA F.. Classification of abrupt changes along viewing profiles of scientific articles. Journal of Informetrics, v. 15, n. 2, p. 15-pg., 2021-03-18. (18/09125-4, 18/10489-0, 15/22308-2, 16/19069-9, 15/08003-4)

BENATTI, ALEXANDRE; DE ARRUDA, HENRIQUE FERRAZ; COMIN, CESAR HENRIQUE; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA; GLANZEL, W; HEEFFER, S; CHI, PS; ROUSSEAU, R. Robustness of citation networks retrieved from queries. 18TH INTERNATIONAL CONFERENCE ON SCIENTOMETRICS & INFORMETRICS (ISSI2021), v. N/A, p. 2-pg., 2021-01-01. (18/09125-4, 19/16223-5, 15/22308-2, 18/10489-0)

LAVI, BAHRAM; TOKUDA, ERIC K.; MORENO-VERA, FELIPE; NONATO, LUIS GUSTAVO; SILVA, CLAUDIO T.; POCO, JORGE; FARINELLA, GM; RADEVA, P; BOUATOUCH, K. 17K-Graffiti: Spatial and Crime Data Assessments in Sao Paulo City. PROCEEDINGS OF THE 17TH INTERNATIONAL JOINT CONFERENCE ON COMPUTER VISION, IMAGING AND COMPUTER GRAPHICS THEORY AND APPLICATIONS (VISAPP), VOL 4, v. N/A, p. 8-pg., 2022-01-01. (19/01077-3, 15/22308-2, 13/07375-0)

OLIVEIRA, ARTUR ANDRE A. M.; ESPADOTO, MATEUS; HIRATA JR, ROBERTO; TELEA, ALEXANDRU C.; HURTER, C; PURCHASE, H; BOUATOUCH, K. SDBM: Supervised Decision Boundary Maps for Machine Learning Classifiers. PROCEEDINGS OF THE 17TH INTERNATIONAL JOINT CONFERENCE ON COMPUTER VISION, IMAGING AND COMPUTER GRAPHICS THEORY AND APPLICATIONS (VISAPP), VOL 4, v. N/A, p. 11-pg., 2022-01-01. (15/22308-2, 17/25835-9)

OUELLETTE, JULIE; TOUSSAY, XAVIER; COMIN, CESAR H.; COSTA, LUCIANO DA F.; HO, MIRABELLE; LACALLE-AURIOLES, MARIA; FREITAS-ANDRADE, MOISES; LIU, QING YAN; LECLERC, SONIA; PAN, YOULIAN; et al. Vascular contributions to 16p11.2 deletion autism syndrome modeled in mice. NATURE NEUROSCIENCE, v. 23, n. 9, JUL 2020. (15/18942-8, 15/22308-2, 11/50761-2)

WANG, JIEYING; SILVA, DENNIS J.; KOSINKA, JIRI; TELEA, ALEXANDRU; HASHIMOTO, RONALDO F.; ROERDINK, JOS B. T. M.. Interactive image manipulation using morphological trees and spline-based skeletons. COMPUTERS & GRAPHICS-UK, v. 108, p. 13-pg., 2022-11-01. (15/22308-2)

ALMEIDA DE MACEDO OLIVEIRA, ARTUR ANDRE; HIRATA JR, ROBERTO. INACITY - INvestigate and Analyze a CITY. SOFTWAREX, v. 15, JUL 2021. (18/10767-0, 15/22308-2, 15/24485-9)

LI, SIYUAN; REN, WENQI; WANG, FENG; ARAUJO, IAGO BRENO; TOKUDA, ERIC K.; JUNIOR, ROBERTO HIRATA; CESAR-JR., ROBERTO M.; WANG, ZHANGYANG; CAO, XIAOCHUN. A Comprehensive Benchmark Analysis of Single Image Deraining: Current Challenges and Future Perspectives. INTERNATIONAL JOURNAL OF COMPUTER VISION, v. 129, n. 4, p. 1301-1322, APR 2021. (15/22308-2)

GOBBER, CHARLES F.; HASHIMOTO, RONALDO F.; ALVES, WONDER A. L.. An efficient algorithm to update non-flat and incremental attributes in morphological trees. PATTERN RECOGNITION LETTERS, v. 163, p. 8-pg., 2022-10-01. (15/22308-2, 18/15652-7)

ESPADOTO, MATEUS; HIRATA, NINA; TELEA, ALEXANDRU; HURTER, C; PURCHASE, H; BRAZ, J; BOUATOUCH, K. Self-supervised Dimensionality Reduction with Neural Networks and Pseudo-labeling. VISAPP: PROCEEDINGS OF THE 16TH INTERNATIONAL JOINT CONFERENCE ON COMPUTER VISION, IMAGING AND COMPUTER GRAPHICS THEORY AND APPLICATIONS - VOL. 5: VISAPP, v. N/A, p. 11-pg., 2021-01-01. (15/22308-2, 17/25835-9)

OLIVEIRA, HUGO; PENTEADO, LARISSA; MACIEL, JOSE LUIZ; FERRACIOLLI, SUELY FAZIO; TAKAHASHI, MARCELO STRAUS; BLOCH, ISABELLE; CESAR JUNIOR, ROBERTO; IEEE COMP SOC. Automatic Segmentation of Posterior Fossa Structures in Pediatric Brain MRIs. 2021 34TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI 2021), v. N/A, p. 8-pg., 2021-01-01. (19/16112-9, 15/22308-2, 18/07386-5, 20/06744-5, 17/50236-1)

OLIVEIRA, HUGO; CESAR, ROBERTO M., JR.; GAMA, PEDRO H. T.; DOS SANTOS, JEFERSSON A.; DECARVALHO, BM; GONCALVES, LMG. Domain Generalization in Medical Image Segmentation via Meta-Learners. 2022 35TH SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI 2022), v. N/A, p. 6-pg., 2022-01-01. (20/06744-5, 15/22308-2)

CARVALHO, THIAGO; MARTINEZ, JORGE A. CHAMORRO; OLIVEIRA, HUGO; DOS SANTOS, JEFERSSON A.; FEITOSA, RAUL QUEIROZ. Outlier Exposure for Open Set Crop Recognition From Multitemporal Image Sequences. IEEE Geoscience and Remote Sensing Letters, v. 20, p. 5-pg., 2023-01-01. (20/06744-5, 15/22308-2)

HOSSEINI, MARYAM; SEVTSUK, ANDRES; MIRANDA, FABIO; CESAR JR, ROBERTO M.; SILVA, CLAUDIO T.. Mapping the walk: A scalable computer vision approach for generating sidewalk network datasets from aerial imagery. COMPUTERS ENVIRONMENT AND URBAN SYSTEMS, v. 101, p. 13-pg., 2023-02-22. (19/01077-3, 15/22308-2)

SALVATORE, FELIPE DE SOUZA; FINGER, MARCELO; HIRATA JR, ROBERTO; PATRIOTA, ALEXANDRE G.. A resampling-based method to evaluate NLI models. NATURAL LANGUAGE ENGINEERING, v. N/A, p. 28-pg., 2023-06-09. (15/24485-9, 14/12236-1, 19/07665-4, 15/21880-4, 18/21934-5, 15/22308-2)

TOKUDA, ERIC K.; CESAR-, ROBERTO M., JR.; SILVA, CLAUDIO T.; IEEE. Quantifying the presence of graffiti in urban environments. 2019 IEEE INTERNATIONAL CONFERENCE ON BIG DATA AND SMART COMPUTING (BIGCOMP), v. N/A, p. 4-pg., 2019-01-01. (14/24918-0, 15/22308-2)

BLANGER, LEONARDO; HIRATA, NINA S. T.; IEEE. AN EVALUATION OF DEEP LEARNING TECHNIQUES FOR QR CODE DETECTION. 2019 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING (ICIP), v. N/A, p. 5-pg., 2019-01-01. (17/25835-9, 18/00390-7, 15/22308-2)

COSTA, LUCIANO DA F.; TOKUDA, ERIC K.. A similarity approach to cities and features. European Physical Journal B, v. 95, n. 9, p. 14-pg., 2022-09-01. (15/22308-2, 19/01077-3)

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ALLAHYARZADEH BIDGOLI, ALI; HAMIDISHAD, NAYEREH; YANAGIHARA, JURANDIR ITIZO. The Impact of Carbon Capture Storage and Utilization on Energy Efficiency, Sustainability, and Production of an Offshore Platform: Thermodynamic and Sensitivity Analyses. JOURNAL OF ENERGY RESOURCES TECHNOLOGY-TRANSACTIONS OF THE ASME, v. 144, n. 11, p. 16-pg., 2022-11-01. (15/22308-2)

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DINIZ, PAULO S. R.; YAZDANPANAH, NAMED; LIMA, MARKUS V. S.; IEEE. Feature LMS Algorithm for Bandpass System Models. 2019 27TH EUROPEAN SIGNAL PROCESSING CONFERENCE (EUSIPCO), v. N/A, p. 5-pg., 2019-01-01. (19/06280-1, 15/22308-2)

GAMA, PEDRO HENRIQUE TARGINO; OLIVEIRA, HUGO; DOS SANTOS, JEFERSSON A.; CESAR JR, ROBERTO M.. An overview on Meta-learning approaches for Few-shot Weakly-supervised Segmentation. COMPUTERS & GRAPHICS-UK, v. 113, p. 12-pg., 2023-05-28. (15/22308-2, 17/50236-1, 20/06744-5)

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FERREIRA, GUSTAVO RODRIGUES; NAKAYA, HELDER IMOTO; COSTA, LUCIANO DA FONTOURA. Gene regulatory and signaling networks exhibit distinct topological distributions of motifs. PHYSICAL REVIEW E, v. 97, n. 4, p. 6-pg., 2018-04-27. (14/19323-7, 15/22308-2, 12/19278-6)

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TOKUDA, ERIC K.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Impact of the topology of urban streets on mobility optimization. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, v. 2022, n. 10, p. 20-pg., 2022-10-01. (18/09125-4, 21/12354-8, 19/01077-3, 15/22308-2)

BENATTI, ALEXANDRE; DE ARRUDA, HENRIQUE FERRAZ; SILVA, FILIPI NASCIMENTO; COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. On the stability of citation networks. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 610, p. 14-pg., 2022-12-23. (18/10489-0, 21/12354-8, 15/22308-2)

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BURKE, PAULO E. P.; CAMPOS, CLAUDIA B. DE L.; COSTA, LUCIANO DA F.; QUILES, MARCOS G.. A biochemical network modeling of a whole-cell. SCIENTIFIC REPORTS, v. 10, n. 1, p. 14-pg., 2020-08-06. (15/50122-0, 15/22308-2)

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CERIBELI, CAROLINE; FERRAZ DE ARRUDA, HENRIQUE; DA FONTOURA COSTA, LUCIANO. How coupled are capillary electrophoresis and mass spectrometry?. SCIENTOMETRICS, v. 126, n. 5, p. 3841-3851, MAY 2021. (13/07375-0, 15/22308-2, 19/16223-5, 18/10489-0, 11/50761-2)

CERIBELI, CAROLINE; FERRAZ DE ARRUDA, HENRIQUE; DA FONTOURA COSTA, LUCIANO. How coupled are capillary electrophoresis and mass spectrometry?. SCIENTOMETRICS, MAR 2021. (15/22308-2, 13/07375-0, 11/50761-2, 18/10489-0, 19/16223-5)

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KHAKHKI, MOHSEN KAZEMNIA; MOGHADDAM, PEYMAN POOR; YAZDANPANAH, HAMED; MANSUR, WEBE J.. High-resolution time-frequency hilbert transform using sparsity-aware weighting function. EARTH SCIENCE INFORMATICS, JUN 2021. (15/22308-2)

VEGA-OLIVEROS, DIDIER A.; COSTA, LUCIANO DA FONTOURA; RODRIGUES, FRANCISCO APARECIDO. Influence maximization by rumor spreading on correlated networks through community identification. COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION, v. 83, APR 2020. (15/22308-2, 11/50761-2, 15/50122-0, 13/07375-0, 16/23698-1, 18/24260-5)

CARNEIRO-SAMPAIO, MAGDA; MOREIRA-FILHO, CARLOS ALBERTO; BANDO, SILVIA YUMI; DEMENGEOT, JOCELYNE; COUTINHO, ANTONIO. Intrauterine IPEX. FRONTIERS IN PEDIATRICS, v. 8, NOV 20 2020. (15/22308-2, 14/50489-9)

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CHAMORRO MARTINEZ, JORGE A.; OLIVEIRA, HUGO; DOS SANTOS, JEFERSSON A.; FEITOSA, RAUL QUEIROZ. Open Set Semantic Segmentation for Multitemporal Crop Recognition. IEEE Geoscience and Remote Sensing Letters, v. 19, 2022. (17/50236-1, 20/06744-5, 15/22308-2)

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DE ARRUDA, HENRIQUE F.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. Problem-solving using complex networks. European Physical Journal B, v. 92, n. 6, JUN 2019. (13/07375-0, 15/22308-2, 11/50761-2, 18/09125-4)

DE ARRUDA, HENRIQUE F.; COMIN, CESAR H.; COSTA, LUCIANO DA F.. How integrated are theoretical and applied physics?. SCIENTOMETRICS, v. 116, n. 2, p. 1113-1121, AUG 2018. (15/18942-8, 15/22308-2, 11/50761-2)

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YAZDANPANAH, HAMED; DINIZ, PAULO S. R.; LIMA, MARKUS V. S.. Low-Complexity Feature Stochastic Gradient Algorithm for Block-Lowpass Systems. IEEE ACCESS, v. 7, p. 141587-141593, 2019. (15/22308-2, 19/06280-1)

COMIN, CESAR H.; TAYLOR, GAVIN J.; COSTA, LUCIANO DA F.. Quantifying the regularity of a 3D set of points on the surface of an ellipsoidal object. PATTERN RECOGNITION LETTERS, v. 133, p. 1-7, MAY 2020. (15/22308-2, 11/50761-2, 18/09125-4)

ABELLO, ANTONIO AUGUSTO; HIRATA, R., JR.; IEEE. Optimizing Super Resolution for Face Recognition. 2019 32ND SIBGRAPI CONFERENCE ON GRAPHICS, PATTERNS AND IMAGES (SIBGRAPI), v. N/A, p. 8-pg., 2019-01-01. (15/01587-0, 15/22308-2)

MONTEIRO SILVA, AUGUSTO CESAR; HIRATA, NINA S. T.; JIANG, XIAOYI; IEEE COMP SOC. Skeletal Similarity based Structural Performance Evaluation for Document Binarization. 2020 17TH INTERNATIONAL CONFERENCE ON FRONTIERS IN HANDWRITING RECOGNITION (ICFHR 2020), v. N/A, p. 6-pg., 2020-01-01. (15/22308-2, 19/07361-5, 18/00477-5, 17/25835-9)

DE ARRUDA, HENRIQUE FERRAZ; BENATTI, ALEXANDRE; SILVA, FILIPI NASCIMENTO; COMIN, CESAR HENRIQUE; COSTA, LUCIANO DA FONTOURA. Contrarian effects and echo chamber formation in opinion dynamics. JOURNAL OF PHYSICS-COMPLEXITY, v. 2, n. 1, p. 12-pg., 2021-06-01. (19/16223-5, 15/22308-2, 18/10489-0, 11/50761-2, 18/09125-4)

SANDRA ELISABETE VIEIRA; SILVIA YUMI BANDO; GERHARD DA PAZ LAUTERBACH; CARLOS ALBERTO MOREIRA-FILHO. Human Leukocyte Transcriptional Response to SARS-CoV-2 Infection. Clinics, v. 75, 2020-06-22. (20/06160-3, 15/22308-2)

PORTES, MARIA TERESA; DAMINELI, DANIEL S. C.; FEIJO, JOSE A.. Spatiotemporal Quantification of Cytosolic pH in Arabidopsis Pollen Tubes. BIO-PROTOCOL, v. 11, n. 14, JUL 20 2021. (19/26129-6, 19/23343-7, 15/22308-2, 21/05363-0)

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RIVA, MATEUS; GORI, PIETRO; YGER, FLORIAN; BLOCH, ISABELLE; IEEE. IS THE U-NET DIRECTIONAL-RELATIONSHIP AWARE?. 2022 IEEE INTERNATIONAL CONFERENCE ON IMAGE PROCESSING, ICIP, v. N/A, p. 5-pg., 2022-01-01. (17/50236-1, 15/22308-2)

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YAZDANPANAH, HAMED; APOLINARIO, JOSE A., JR.; MATTHEWS, MB. FEATURE NORMALIZED LMS ALGORITHMS. CONFERENCE RECORD OF THE 2019 FIFTY-THIRD ASILOMAR CONFERENCE ON SIGNALS, SYSTEMS & COMPUTERS, v. N/A, p. 4-pg., 2019-01-01. (19/06280-1, 15/22308-2)

GUPTA, SHANTANU; PANDA, PRITAM KUMAR; SILVEIRA, DANER A.; AHUJA, RAJEEV; HASHIMOTO, RONALDO F.. Quadra-Stable Dynamics of p53 and PTEN in the DNA Damage Response. CELLS, v. 12, n. 7, p. 17-pg., 2023-04-01. (21/09070-8, 15/22308-2)

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GUPTA, SHANTANU; SILVEIRA, DANER A.; HASHIMOTO, RONALDO F.. A Boolean model of the oncogene role of FAM111B in lung adenocarcinoma. COMPUTATIONAL BIOLOGY AND CHEMISTRY, v. 106, p. 6-pg., 2023-10-01. (21/09070-8, 15/22308-2)

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BENATTI, ALEXANDRE; COSTA, LUCIANO DA F.. Recovering hierarchies in terms of content similarity. Journal of Physics A-Mathematical and Theoretical, v. 56, n. 24, p. 20-pg., 2023-06-16. (15/22308-2)

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BENATTI, ALEXANDRE; DE ARRRUDA, HENRIQUE FERRAZ; SILVA, FILIPI NASCIMENTO; COSTA, LUCIANO DA FONTOURA. Enriching and analyzing small citation networks: A case study on transistor's history. PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, v. 573, p. 13-pg., 2021-03-24. (13/07375-0, 19/16223-5, 18/10489-0, 15/22308-2)

KHAKHKI, MOHSEN KAZEMNIA; MOGHADDAM, PEYMAN POOR; YAZDANPANAH, HAMED; MANSUR, WEBE J.. High-resolution time-frequency hilbert transform using sparsity-aware weighting function. EARTH SCIENCE INFORMATICS, v. 14, n. 3, p. 16-pg., 2021-06-11. (15/22308-2)

XAVIER CEJNOG, LUCIANO WALENTY; CESAR, ROBERTO MARCONDES, JR.; DE CAMPOS, TEOFILO E.; CARRIL ELUI, VALRIA MEIRELLES; IEEE. Hand range of motion evaluation for Rheumatoid Arthritis patients. 2019 14TH IEEE INTERNATIONAL CONFERENCE ON AUTOMATIC FACE AND GESTURE RECOGNITION (FG 2019), v. N/A, p. 5-pg., 2019-01-01. (15/22308-2, 14/50769-1, 16/13791-4)

MARTINAZZO, ANA; ESPADOTO, MATEUS; HIRATA, NINA S. T.; FARINELLA, GM; RADEVA, P; BRAZ, J. Deep Learning for Astronomical Object Classification: A Case Study. VISAPP: PROCEEDINGS OF THE 15TH INTERNATIONAL JOINT CONFERENCE ON COMPUTER VISION, IMAGING AND COMPUTER GRAPHICS THEORY AND APPLICATIONS, VOL 4: VISAPP, v. N/A, p. 9-pg., 2020-01-01. (17/25835-9, 18/25671-9, 15/22308-2)

MEDINA-RODRIGUEZ, ROSARIO; BELTRAN-CASTANON, CESAR; HASHIMOTO, RONALDO FUMIO. An Approach to Growth Delimitation of Straight Line Segment Classifiers Based on a Minimum Bounding Box. Entropy, v. 23, n. 11, NOV 2021. (15/22308-2)

ALLAHYARZADEH-BIDGOLI, ALI; HAMIDISHAD, NAYEREH; YANAGIHARA, JURANDIR ITIZO. Carbon Capture and Storage Energy Consumption and Performance Optimization Using Metamodels and Response Surface Methodology. JOURNAL OF ENERGY RESOURCES TECHNOLOGY-TRANSACTIONS OF THE ASME, v. 144, n. 5, p. 12-pg., 2022-05-01. (15/22308-2)

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KAWASHIMA, IRINA YURI; NEGRET LOPEZ, MARIA CLAUDIA; CUNHA, MARIELTON DOS PASSOS; HASHIMOTO, RONALDO FUMIO. SARS-CoV-2 host prediction based on virus-host genetic features. SCIENTIFIC REPORTS, v. 12, n. 1, p. 9-pg., 2022-03-17. (15/22308-2, 19/24518-5)

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