Study of Chromatographic Retention of Natural Terpenoids by Chemoinformatic Tools

Autor(es)

Oliveira, Tiago B. ^{[1, 2]} ; Gobbo-Neto, Leonardo ^[3] ; Schmidt, Thomas J. ^[2] ; Da Costa, Fernando B. ^[1]

Afiliação do(s) autor(es)

^[1] Univ Sao Paulo, AsterBioChem Res Team, Lab Pharmacognosy, Dept Pharmaceut Sci Ribeirao Preto, BR-14040903 Ribeirao Preto, SP - Brazil

^[2] Univ Munster, IPBP, D-48159 Munster - Germany

^[3] Univ Sao Paulo, Sch Pharmaceut Sci Ribeirao Preto, BR-14040903 Ribeirao Preto, SP - Brazil

• Tipo de documento: Artigo Científico
• Fonte: JOURNAL OF CHEMICAL INFORMATION AND MODELING; v. 55, n. 1, p. 26-38, JAN 2015.
• Citações Web of Science: 13

Resumo

The study of chromatographic retention of natural products can be used to increase their identification speed in complex biological matrices. In this work, six variables were used to study the retention behavior in reversed phase liquid chromatography of 39 sesquiterpene lactones (SL) from an in-house database using chemoinformatics tools. To evaluate the retention of the SL, retention parameters on an ODS C-18 column in two different solvent systems were experimentally obtained, namely, MeOHH2O 55:45 and MeCNH2O 35:75. The chemoinformatics approach involved three descriptor type sets (one 2D and two 3D) comprising three groups of each (four, five, and six descriptors), two different training and test sets, four algorithms for variable selection (best first, linear forward, greedy stepwise, and genetic algorithm), and two modeling methods (partial least-squares regression and back-propagation artificial neural network). The influence of the six variables used in this study was assessed in a holistic context, and influences on the best model for each solvent system were analyzed. The best set for MeOHH2O showed acceptable correlation statistics with training R-2 = 0.91, cross-validation Q(2) = 0.88, and external validation P-2 = 0.80, and the best MeCNH2O model showed much higher correlation statistics with training R-2 = 0.96, cross-validation Q(2) = 0.92, and external validation P-2 = 0.91. Consensus models were built for each chromatographic system, and although all of them showed an improved statistical performance, only one for the MeCNH2O system was able to separate isomers as well as to improve the performance. The approach described herein can therefore be used to generate reproducible and robust models for QSRR studies of natural products as well as an aid for dereplication of complex biological matrices using plant metabolomics-based techniques. (AU)

• Processo FAPESP: 08/05754-5 - Ferramentas de fitoquímica, de quimioinformática e metodologias analíticas na desreplicação de extratos de plantas medicinais
• Beneficiário: Leonardo Gobbo Neto
• Linha de fomento: Bolsas no Brasil - Pós-Doutorado
• Processo FAPESP: 11/17860-7 - Emprego de ferramentas de quimioinformática no estudo do perfil metabólico de plantas e na desreplicação de matrizes vegetais
• Beneficiário: Tiago Branquinho Oliveira
• Linha de fomento: Bolsas no Brasil - Doutorado
• Processo FAPESP: 13/14239-5 - Uso de ferramentas de quimioinformática na avaliação do comportamento do tempo de retenção de produtos naturais
• Beneficiário: Tiago Branquinho Oliveira
• Linha de fomento: Bolsas no Exterior - Estágio de Pesquisa - Doutorado
• Processo FAPESP: 10/51454-3 - Estudos morfoanatômicos, metabolômicos e moleculares como subsídios à sistemática de espécies de Asteraceae e acesso ao seu potencial farmacológico
• Beneficiário: Beatriz Appezzato da Glória
• Linha de fomento: Auxílio à Pesquisa - Temático