Inbreeding estimates in human populations: Applying new approaches to an admixed Brazilian isolate

Autor(es)

Lemes, Renan B. ^[1] ; Nunes, Kelly ^[1] ; Carnavalli, Juliana E. P. ^[1] ; Kimura, Lilian ^[1] ; Mingroni-Netto, Regina C. ^[1] ; Meyer, Diogo ^[1] ; Otto, Paulo A. ^[1]

Afiliação do(s) autor(es)

^[1] Univ Sao Paulo, Inst Biociencias, Dept Genet & Evolutionary Biol, Sao Paulo, SP - Brazil

• Tipo de documento: Artigo Científico
• Fonte: PLoS One; v. 13, n. 4 APR 24 2018.
• Citações Web of Science: 4

Resumo

The analysis of genomic data (similar to 400,000 autosomal SNPs) enabled the reliable estimation of inbreeding levels in a sample of 541 individuals sampled from a highly admixed Brazilian population isolate (an African-derived quilombo in the State of Sao Paulo). To achieve this, different methods were applied to the joint information of two sets of markers (one complete and another excluding loci in patent linkage disequilibrium). This strategy allowed the detection and exclusion of markers that biased the estimation of the average population inbreeding coefficient (Wright's fixation index FIS), which value was eventually estimated as around 1% using any of the methods we applied. Quilombo demographic inferences were made by analyzing the structure of runs of homozygosity (ROH), which were adapted to cope with a highly admixed population with a complex foundation history. Our results suggest that the amount of ROH <2Mb of admixed populations should be somehow proportional to the genetic contribution from each parental population. (AU)

• Processo FAPESP: 11/50595-5 - Investigação de novos genes de susceptibilidade à hipertensão essencial em afro-brasileiros
• Beneficiário: Lilian Kimura
• Linha de fomento: Bolsas no Brasil - Pós-Doutorado
• Processo FAPESP: 12/18010-0 - Seleção balanceadora no genoma humano: detecção, causas e consequências
• Beneficiário: Diogo Meyer
• Linha de fomento: Auxílio à Pesquisa - Regular
• Processo FAPESP: 12/09950-9 - Evolução de genes HLA: diferenciação populacional e sinais de seleção recente em populações nativas e miscigenadas do Brasil
• Beneficiário: Kelly Nunes
• Linha de fomento: Bolsas no Brasil - Pós-Doutorado