| Texto completo | |
| Autor(es): Mostrar menos - |
Dias, Gabriel
;
Berto, Rodrigo Pommot
;
Oliveira, Mateus
;
Ueda, Lucas
;
Dertkigil, Sergio
;
Costa, Paula D. P.
;
Shamaei, Amirmohammad
;
Bugler, Hanna
;
Souza, Roberto
;
Harris, Ashley
;
Rittner, Leticia
Número total de Autores: 11
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| Tipo de documento: | Artigo Científico |
| Fonte: | MAGNETIC RESONANCE IMAGING; v. 113, p. 11-pg., 2024-07-31. |
| Resumo | |
This study investigated the use of a Vision Transformer (ViT) for reconstructing GABA-edited Magnetic Resonance Spectroscopy (MRS) data from a reduced number of transients. Transients refer to the samples collected during an MRS acquisition by repeating the experiment to generate a signal of sufficient quality. Specifically, 80 transients were used instead of the typical 320 transients, aiming to reduce scan time. The 80 transients were preprocessed and converted into a spectrogram image representation using the Short-Time Fourier Transform (STFT). A pre-trained ViT, named Spectro-ViT, was fine-tuned and then tested using in-vivo GABA-edited MEGA- PRESS data. Its performance was compared against other pipelines in the literature using quantitative quality metrics and estimated metabolite concentration values, with the typical 320-transient scans serving as the reference for comparison. The Spectro-ViT model exhibited the best overall quality metrics among all other pipelines against which it was compared. The metabolite concentrations from Spectro-ViT's reconstructions for GABA+ + achieved the best average R2 2 value of 0.67 and the best average Mean Absolute Percentage Error (MAPE) value of 9.68%, with no significant statistical differences found compared to the 320-transient reference. The code to reproduce this research is available at https://github.com/MICLab-Unicamp/Spectro-ViT (AU) | |
| Processo FAPESP: | 20/09838-0 - BI0S - Brazilian Institute of Data Science |
| Beneficiário: | João Marcos Travassos Romano |
| Modalidade de apoio: | Auxílio à Pesquisa - Programa Centros de Pesquisa Aplicada |
| Processo FAPESP: | 13/07559-3 - Instituto Brasileiro de Neurociência e Neurotecnologia - BRAINN |
| Beneficiário: | Fernando Cendes |
| Modalidade de apoio: | Auxílio à Pesquisa - Centros de Pesquisa, Inovação e Difusão - CEPIDs |