Inferring patterns in mitochondrial DNA sequences through hypercube independent spanning trees

Autor(es)

da Silva, Eduardo Sant'Ana ^[1] ; Pedrini, Helio ^[1]

Afiliação do(s) autor(es)

^[1] Univ Estadual Campinas, Inst Comp, BR-13083852 Campinas, SP - Brazil

• Tipo de documento: Artigo Científico
• Fonte: COMPUTERS IN BIOLOGY AND MEDICINE; v. 70, p. 51-57, MAR 1 2016.
• Citações Web of Science: 2

Resumo

Given a graph G, a set of spanning trees rooted at a vertex r of G is said vertex/edge independent if, for each vertex v of G, v not equal r, the paths of r to v in any pair of trees are vertex/edge disjoint. Independent spanning trees (ISTs) provide a number of advantages in data broadcasting due to their fault tolerant properties. For this reason, some studies have addressed the issue by providing mechanisms for constructing independent spanning trees efficiently. In this work, we investigate how to construct independent spanning trees on hypercubes, which are generated based upon spanning binomial trees, and how to use them to predict mitochondrial DNA sequence parts through paths on the hypercube. The prediction works both for inferring mitochondrial DNA sequences comprised of six bases as well as infer anomalies that probably should not belong to the mitochondrial DNA standard. (C) 2016 Elsevier Ltd. All rights reserved. (AU)

• Processo FAPESP: 11/22749-8 - Desafios em visualização exploratória de dados multidimensionais: novos paradigmas, escalabilidade e aplicações
• Beneficiário: Luis Gustavo Nonato
• Linha de fomento: Auxílio à Pesquisa - Temático