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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration

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Zdouc, Mitja M. ; Blin, Kai ; Louwen, Nico L. L. ; Navarro, Jorge ; Loureiro, Catarina ; Bader, Chantal D. ; Bailey, Constance B. ; Barra, Lena ; Booth, Thomas J. ; Bozhueyuek, Kenan A. J. ; Cediel-Becerra, Jose D. D. ; Charlop-Powers, Zachary ; Chevrette, Marc G. ; Chooi, Yit Heng ; D'Agostino, Paul M. ; de Rond, Tristan ; Del Pup, Elena ; Duncan, Katherine R. ; Gu, Wenjia ; Hanif, Novriyandi ; Helfrich, Eric J. N. ; Jenner, Matthew ; Katsuyama, Yohei ; Korenskaia, Aleksandra ; Krug, Daniel ; Libis, Vincent ; Lund, George A. ; Mantri, Shrikant ; Morgan, Kalindi D. ; Owen, Charlotte ; Phan, Chin-Soon ; Philmus, Benjamin ; Reitz, Zachary L. ; Robinson, Serina L. ; Singh, Kumar Saurabh ; Teufel, Robin ; Tong, Yaojun ; Tugizimana, Fidele ; Ulanova, Dana ; Winter, Jaclyn M. ; Aguilar, Cesar ; Akiyama, Daniel Y. ; Al-Salihi, Suhad A. A. ; Alanjary, Mohammad ; Alberti, Fabrizio ; Aleti, Gajender ; Alharthi, Shumukh A. ; Arias Rojo, Mariela Y. ; Arishi, Amr A. ; Augustijn, Hannah E. ; Avalon, Nicole E. ; Avelar-Rivas, J. Abraham ; Axt, Kyle K. ; Barbieri, Hellen B. ; Barbosa, Julio Cesar J. ; Barboza Segato, Lucas Gabriel ; Barrett, Susanna E. ; Baunach, Martin ; Beemelmanns, Christine ; Beqaj, Dardan ; Berger, Tim ; Bernaldo-Agueero, Jordan ; Bettenbuehl, Sandra M. ; Bielinski, Vincent A. ; Biermann, Friederike ; Borges, Ricardo M. ; Borriss, Rainer ; Breitenbach, Milena ; Bretscher, Kevin M. ; Brigham, Michael W. ; Buedenbender, Larissa ; Bulcock, Brodie W. ; Cano-Prieto, Carolina ; Capela, Joao ; Carrion, Victor J. ; Carter, Riley S. ; Castelo-Branco, Raquel ; Castro-Falcon, Gabriel ; Chagas, Fernanda O. ; Charria-Giron, Esteban ; Chaudhri, Ayesha Ahmed ; Chaudhry, Vasvi ; Choi, Hyukjae ; Choi, Yukyung ; Choupannejad, Roya ; Chromy, Jakub ; Donahey, Melinda S. Chue ; Collemare, Jerome ; Connolly, Jack A. ; Creamer, Kaitlin E. ; Cruesemann, Max ; Arredondo Cruz, Andres ; Cumsille, Andres ; Dallery, Jean-Felix ; Damas-Ramos, Luis Caleb ; Damiani, Tito ; de Kruijff, Martinus ; Delgado Martin, Belen ; Della Sala, Gerardo ; Dillen, Jelle ; Doering, Drew T. ; Dommaraju, Shravan R. ; Durusu, Suhan ; Egbert, Susan ; Ellerhorst, Mark ; Faussurier, Baptiste ; Fetter, Artem ; Feuermann, Marc ; Fewer, David P. ; Foldi, Jonathan ; Frediansyah, Andri ; Garza, Erin A. ; Gavriilidou, Athina ; Gentile, Andrea ; Gerke, Jennifer ; Gerstmans, Hans ; Gomez-Escribano, Juan Pablo ; Gonzalez-Salazar, Luz A. ; Grayson, Natalie E. ; Greco, Claudio ; Gris Gomez, Juan E. ; Guerra, Sebastian ; Guerrero Flores, Shaday ; Gurevich, Alexey ; Gutierrez-Garcia, Karina ; Hart, Lauren ; Haslinger, Kristina ; He, Beibei ; Hebra, Teo ; Hemmann, Jethro L. ; Hindra, Hindra ; Hoing, Lars ; Holland, Darren C. ; Holme, Jonathan E. ; Horch, Therese ; Hrab, Pavlo ; Hu, Jie ; Thanh-Hau Huynh ; Hwang, Ji-Yeon ; Iacovelli, Riccardo ; Iftime, Dumitrita ; Iorio, Marianna ; Jayachandran, Sidharth ; Jeong, Eunah ; Jing, Jiayi ; Jung, Jung J. ; Kakumu, Yuya ; Kalkreuter, Edward ; Kang, Kyo Bin ; Kang, Sangwook ; Kim, Wonyong ; Kim, Geum Jin ; Kim, Hyunwoo ; Kim, Hyun Uk ; Klapper, Martin ; Koetsier, Robert A. ; Kollten, Cassandra ; Kovacs, Akos T. ; Kriukova, Yelyzaveta ; Kubach, Noel ; Kunjapur, Aditya M. ; Kushnareva, Aleksandra K. ; Kust, Andreja ; Lamber, Jessica ; Larralde, Martin ; Larsen, Niels J. ; Launay, Adrien P. ; Ngoc-Thao-Hien Le ; Lebeer, Sarah ; Lee, Byung Tae ; Lee, Kyungha ; Lev, Katherine L. ; Li, Shu-Ming ; Li, Yong-Xin ; Licona-Cassani, Cuauhtemoc ; Lien, Annette ; Liu, Jing ; Lopez, Julius Adam V. ; Machushynets, Nataliia V. ; Macias, Marla I. ; Mahmud, Taifo ; Maleckis, Matiss ; Martinez-Martinez, Anadir Maharai ; Mast, Yvonne ; Maximo, Marina F. ; McBride, Christina M. ; McLellan, Rose M. ; Bhatt, Khyati Mehta ; Melkonian, Chrats ; Merrild, Aske ; Metsa-Ketela, Mikko ; Mitchell, Douglas A. ; Mueller, Alison V. ; Giang-Son Nguyen ; Nguyen, Hera T. ; Niedermeyer, Timo H. J. ; O'Hare, Julia H. ; Ossowicki, Adam ; Ostash, Bohdan O. ; Otani, Hiroshi ; Padva, Leo ; Paliyal, Sunaina ; Pan, Xinya ; Panghal, Mohit ; Parade, Dana S. ; Park, Jiyoon ; Parra, Jonathan ; Pedraza Rubio, Marcos ; Pham, Huong T. ; Pidot, Sacha J. ; Piel, Joern ; Pourmohsenin, Bita ; Rakhmanov, Malik ; Ramesh, Sangeetha ; Rasmussen, Michelle H. ; Rego, Adriana ; Reher, Raphael ; Rice, Andrew J. ; Rigolet, Augustin ; Romero-Otero, Adriana ; Rosas-Becerra, Luis Rodrigo ; Rosiles, Pablo Y. ; Rutz, Adriano ; Ryu, Byeol ; Sahadeo, Libby-Ann ; Saldanha, Murrel ; Salvi, Luca ; Sanchez-Carvajal, Eduardo ; Santos-Medellin, Christian ; Sbaraini, Nicolau ; Schoellhorn, Sydney M. ; Schumm, Clemens ; Sehnal, Ludek ; Selem, Nelly ; Shah, Anjali D. ; Shishido, Tania K. ; Sieber, Simon ; Silviani, Velina ; Singh, Garima ; Singh, Hemant ; Sokolova, Nika ; Sonnenschein, Eva C. ; Sosio, Margherita ; Sowa, Sven T. ; Steffen, Karin ; Stegmann, Evi ; Streiff, Alena B. ; Strueder, Alena ; Surup, Frank ; Svenningsen, Tiziana ; Sweeney, Douglas ; Szenei, Judit ; Tagirdzhanov, Azat ; Tan, Bin ; Tarnowski, Matthew J. ; Terlouw, Barbara R. ; Rey, Thomas ; Thome, Nicola U. ; Ortega, Laura Rosina Torres ; Torring, Thomas ; Trindade, Marla ; Truman, Andrew W. ; Tvilum, Marie ; Udwary, Daniel W. ; Ulbricht, Christoph ; Vader, Lisa ; van Wezel, Gilles P. ; Walmsley, Max ; Warnasinghe, Randika ; Weddeling, Heiner G. ; Weir, Angus N. M. ; Williams, Katherine ; Williams, Sam E. ; Witte, Thomas E. ; Rocca, Steffaney M. Wood ; Yamada, Keith ; Yang, Dong ; Yang, Dongsoo ; Yu, Jingwei ; Zhou, Zhenyi ; Ziemert, Nadine ; Zimmer, Lukas ; Zimmermann, Alina ; Zimmermann, Christian ; van der Hooft, Justin J. J. ; Linington, Roger G. ; Weber, Tilmann ; Medema, Marnix H.
Número total de Autores: 288
Tipo de documento: Artigo Científico
Fonte: Nucleic Acids Research; v. 53, n. D1, p. 13-pg., 2025-01-06.
Resumo

Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with applications in agriculture, engineering and medicine. Usually, the biosynthesis of these natural products is governed by sets of co-regulated and physically clustered genes known as biosynthetic gene clusters (BGCs). To share information about BGCs in a standardized and machine-readable way, the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard and repository was initiated in 2015. Since its conception, MIBiG has been regularly updated to expand data coverage and remain up to date with innovations in natural product research. Here, we describe MIBiG version 4.0, an extensive update to the data repository and the underlying data standard. In a massive community annotation effort, 267 contributors performed 8304 edits, creating 557 new entries and modifying 590 existing entries, resulting in a new total of 3059 curated entries in MIBiG. Particular attention was paid to ensuring high data quality, with automated data validation using a newly developed custom submission portal prototype, paired with a novel peer-reviewing model. MIBiG 4.0 also takes steps towards a rolling release model and a broader involvement of the scientific community. MIBiG 4.0 is accessible online at https://mibig.secondarymetabolites.org/. [GRAPHICS] . (AU)

Processo FAPESP: 21/07038-0 - Investigação química e molecular do papel dos produtos naturais nas interações biológicas entre Penicillium brasilianum e seus hospedeiros
Beneficiário:Daniel Yuri Akiyama
Modalidade de apoio: Bolsas no Brasil - Doutorado Direto
Processo FAPESP: 23/01956-2 - Estudo biossintético de ciclodepsipeptídeos e geração de diversidade estrutural em Penicillium brasilianum por biossíntese mutacional
Beneficiário:Marina Ferreira Maximo
Modalidade de apoio: Bolsas no Brasil - Mestrado
Processo FAPESP: 21/08947-3 - Avaliação química da interação patógeno-hospedeiro da Doença Huanglongbing
Beneficiário:Hellen Bertoletti Barbieri
Modalidade de apoio: Bolsas no Brasil - Doutorado Direto