SNUFER: A software for localization and presentation of single nucleotide polymorphisms using a Clustal multiple sequence alignment output file

Autor(es)

Mansur, Marco A. B. ; Cardozo, Giovana P. ; Santos, Elaine, V ; Marins, Mozart

• Tipo de documento: Artigo Científico
• Fonte: BIOINFORMATION; v. 3, n. 2, p. 2-pg., 2008-01-01.

Resumo

SNUFER is software for the automatic localization and generation of tables used for the presentation of single nucleotide polymorphisms (SNPs). A multiple sequence alignment is generated using ClustalW ran inside SNUFER using an input of a FASTA file containing the sequences to be analyzed. The ClustalW output file is then used to generate a table which displays the SNPs detected in the aligned sequences and their degree of similarity. This table can be exported to Microsoft Word, Microsoft Excel or as a single text file, permitting further editing for publication. The software was written using Delphi 7 for programming and FireBird 2.0 for sequence database management. (AU)

• Processo FAPESP: 04/14196-5 - Análise da biodiversidade de bactérias associadas à erliquiose canina na região de Ribeirão Preto
• Beneficiário: Mozart de Azevedo Marins
• Modalidade de apoio: Auxílio à Pesquisa - Pesquisa Inovativa em Pequenas Empresas - PIPE