ipyrad: Interactive assembly and analysis of RADseq datasets

Autor(es)

Eaton, Deren A. R. ^[1] ; Overcast, Isaac ^[2]

Afiliação do(s) autor(es)

^[1] Columbia Univ, Dept Ecol Evolut & Environm Biol, New York, NY 10027 - USA

^[2] CUNY, Univ Ctr, Grad Sch, Dept Biol, New York, NY 10016 - USA

• Tipo de documento: Artigo Científico
• Fonte: Bioinformatics; v. 36, n. 8, p. 2592-2594, APR 15 2020.
• Citações Web of Science: 3

Resumo

A Summary: ipyrad is a free and open source tool for assembling and analyzing restriction site-associated DNA sequence datasets using de novo and/or reference-based approaches. It is designed to be massively scalable to hundreds of taxa and thousands of samples, and can be efficiently parallelized on high performance computing clusters. It is available both as a command line interface and as a Python package with an application programming interface, the latter of which can be used interactively to write complex, reproducible scripts and implement a suite of downstream analysis tools. (AU)

• Processo FAPESP: 13/50297-0 - Dimensions US-BIOTA São Paulo: integrando disciplinas para a predição da biodiversidade da Floresta Atlântica no Brasil
• Beneficiário: Cristina Yumi Miyaki
• Modalidade de apoio: Auxílio à Pesquisa - Programa BIOTA - Temático