| Full text | |
| Author(s): |
Total Authors: 2
|
| Affiliation: | [1] Columbia Univ, Dept Ecol Evolut & Environm Biol, New York, NY 10027 - USA
[2] CUNY, Univ Ctr, Grad Sch, Dept Biol, New York, NY 10016 - USA
Total Affiliations: 2
|
| Document type: | Journal article |
| Source: | Bioinformatics; v. 36, n. 8, p. 2592-2594, APR 15 2020. |
| Web of Science Citations: | 3 |
| Abstract | |
A Summary: ipyrad is a free and open source tool for assembling and analyzing restriction site-associated DNA sequence datasets using de novo and/or reference-based approaches. It is designed to be massively scalable to hundreds of taxa and thousands of samples, and can be efficiently parallelized on high performance computing clusters. It is available both as a command line interface and as a Python package with an application programming interface, the latter of which can be used interactively to write complex, reproducible scripts and implement a suite of downstream analysis tools. (AU) | |
| FAPESP's process: | 13/50297-0 - Dimensions US-BIOTA São Paulo: a multidisciplinary framework for biodiversity prediction in the Brazilian Atlantic forest hotspot |
| Grantee: | Cristina Yumi Miyaki |
| Support Opportunities: | BIOTA-FAPESP Program - Thematic Grants |