The agreement with the National Council for Scientific and Technological Development (CNPq) includes the following agreements:
- CNPq - Junior Scientific Initiation
- CNPq - National Institutes of Science and Technology (INCTs)
- CNPq - Long-Term Ecological Research Network (PELD)
- CNPq - Research in Public Policies for the National Health Care System (PPSUS)
- CNPq - Cooperation Brazil-European Commission Program in Energy Second Generation Biofuels
- CNPq - Cooperation CNPq-FAPESP Program
- CNPq - First Projects Program (PPP)
- CNPq - REFLORA - Virtual Herbarium and Authenticated Species of Brazilian Flora
- CNPq - REPENSA - National Networks on Research in Agricultural Biodiversity and Sustainability
- CNPq - SISBIOTA-Brazil - National Program for Research in Biodiversity
- CNPq - Pronex