CitrusKB: a comprehensive knowledge base for transcriptome and interactome of Citrus spp. infected by Xanthomonas citri subsp. citri at different infection stages

Autor(es):Mostrar menos -

Ferrasa, Adriano ^{[1, 2]} ; Murata, Mayara M. ^{[3, 4]} ; Cofre, Teresa D. C. G. ^[3] ; Cavallini, Juliana S. ^[3] ; Peron, Gustavo ^[3] ; Juliao, Maria H. M. ^[3] ; Belasque, Jose ^[5] ; Ferreira, Henrique ^[6] ; Ferro, Maria Ines T. ^[3] ; Leite, Jr., Rui P. ^[7] ; Penha, Helen A. ^{[3, 8]} ; Carvalho, Flavia M. S. ^[3] ; Varani, Alessandro M. ^[3] ; Herai, Roberto H. ^[2] ; Ferro, Jesus A. ^[3]

Afiliação do(s) autor(es)

^[1] Univ Estadual Ponta Grossa UEPG, Dept Informat, Av Carlos Cavalcanti 4748, BR-84030900 Ponta Grossa, Parana - Brazil

^[2] Pontificia Univ Catolica Parana PUCPR, Sch Med, Grad Program Hlth Sci, R Imaculada Conceicao 1155, BR-80215901 Curitiba, Parana - Brazil

^[3] Univ Estadual Paulista UNESP, Dept Tecnol, Via Acesso Prof Paulo Donato Castellane S-N, BR-14884900 Jaboticabal, SP - Brazil

^[4] Univ Norte Parana UNOPAR, Diretoria Posgrad Stricto Sensu, Av Paris 675, BR-86041100 Londrina, Parana - Brazil

^[5] Univ Sao Paulo, Dept Fitopatol & Nematol, Escola Super Agr Luiz de Queiroz, Av Padua Dias 11, BR-13418900 Piracicaba, SP - Brazil

^[6] Univ Estadual Paulista UNESP, Inst Biociencias, Dept Biol Geral & Aplicada, Av 24-A, 1515, BR-13506900 Rio Claro, SP - Brazil

^[7] Inst Agron Parana IAPAR, Rod Celso Garcia Cid, Km 375, BR-86047902 Londrina, Parana - Brazil

^[8] Inprenha Biotecnol & Desenvolvimento Avancado LTD, Estr Velha Taquaritinga, Km 04, BR-14870970 Jaboticabal, SP - Brazil

• Tipo de documento: Artigo Científico
• Fonte: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION; NOV 11 2020.
• Citações Web of Science: 0

Resumo

Citrus canker type A is a serious disease caused by Xanthomonas citri subsp. citri (X. citri), which is responsible for severe losses to growers and to the citrus industry worldwide. To date, no canker-resistant citrus genotypes are available, and there is limited information regarding the molecular and genetic mechanisms involved in the early stages of the citrus canker development. Here, we present the CitrusKB knowledge base. This is the first in vivo interactome database for different citrus cultivars, and it was produced to provide a valuable resource of information on citrus and their interaction with the citrus canker bacterium X. citri. CitrusKB provides tools for a user-friendly web interface to let users search and analyse a large amount of information regarding eight citrus cultivars with distinct levels of susceptibility to the disease, with controls and infected plants at different stages of infection by the citrus canker bacterium X. citri. Currently, CitrusKB comprises a reference citrus genome and its transcriptome, expressed transcripts, pseudogenes and predicted genomic variations (SNPs and SSRs). The updating process will continue over time by the incorporation of novel annotations and analysis tools. We expect that CitrusKB may substantially contribute to the field of citrus genomics. CitrusKB is accessible at http://bioinfo.deinfo.uepg.br/citrus. Users can down-load all the generated raw sequences and generated datasets by this study from the CitrusKB website. (AU)

• Processo FAPESP: 11/05477-4 - Cancro cítrico: Análise da interação planta-patógeno revelada pelo transcriptoma do patógeno e do hospedeiro
• Beneficiário: Mayara Mari Murata
• Modalidade de apoio: Bolsas no Brasil - Mestrado