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Probing the Conformational States of Thimet Oligopeptidase in Solution

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Autor(es):
Marcondes, Marcelo F. M. ; Santos, Gabriel S. ; Bronze, Fellipe ; Machado, Mauricio F. M. ; Perez, Katia R. ; Hesselink, Renske ; de Vries, Marcel P. ; Broos, Jaap ; Oliveira, Vitor
Número total de Autores: 9
Tipo de documento: Artigo Científico
Fonte: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES; v. 23, n. 13, p. 18-pg., 2022-07-01.
Resumo

Thimet oligopeptidase (TOP) is a metallopeptidase involved in the metabolism of oligopeptides inside and outside cells of various tissues. It has been proposed that substrate or inhibitor binding in the TOP active site induces a large hinge-bending movement leading to a closed structure, in which the bound ligand is enclosed. The main goal of the present work was to study this conformational change, and fluorescence techniques were used. Four active TOP mutants were created, each equipped with a single-Trp residue (fluorescence donor) and a p-nitro-phenylalanine (pNF) residue as fluorescence acceptor at opposite sides of the active site. pNF was biosynthetically incorporated with high efficiency using the amber codon suppression technology. Inhibitor binding induced shorter Donor-Acceptor (D-A) distances in all mutants, supporting the view that a hinge-like movement is operative in TOP. The activity of TOP is known to be dependent on the ionic strength of the assay buffer and D-A distances were measured at different ionic strengths. Interestingly, a correlation between the D-A distance and the catalytic activity of TOP was observed: the highest activities corresponded to the shortest D-A distances. In this study for the first time the hinge-bending motion of a metallopeptidase in solution could be studied, yielding insight about the position of the equilibrium between the open and closed conformation. This information will contribute to a more detailed understanding of the mode of action of these enzymes, including therapeutic targets like neurolysin and angiotensin-converting enzyme 2 (ACE2). (AU)

Processo FAPESP: 14/00661-0 - Desenvolvimento e utilização de técnicas de fluorescência para o estudo de alterações conformacionais em proteínas
Beneficiário:Marcelo Ferreira Marcondes Machado
Modalidade de apoio: Bolsas no Exterior - Estágio de Pesquisa - Pós-Doutorado
Processo FAPESP: 11/20941-9 - Desenvolvimento e utilização de técnicas de fluorescência para o estudo de alterações conformacionais em proteínas
Beneficiário:Marcelo Ferreira Marcondes Machado
Modalidade de apoio: Bolsas no Brasil - Pós-Doutorado
Processo FAPESP: 20/09678-3 - Seleção de inibidores das proteases NS2B/NS3 dos vírus Dengue e Zika através de bibliotecas de peptídeos cíclicos e ensaios de triagem de alto desempenho (high-throughput screening)
Beneficiário:Vitor Marcelo Silveira Bueno Brandão de Oliveira
Modalidade de apoio: Auxílio à Pesquisa - Regular
Processo FAPESP: 18/09158-0 - Prolil oligopeptidase: estrutura-atividade e secreção
Beneficiário:Vitor Marcelo Silveira Bueno Brandão de Oliveira
Modalidade de apoio: Auxílio à Pesquisa - Regular
Processo FAPESP: 11/51989-7 - Jaap Broos | University of Groningen - Holanda
Beneficiário:Vitor Marcelo Silveira Bueno Brandão de Oliveira
Modalidade de apoio: Auxílio à Pesquisa - Pesquisador Visitante - Internacional