New Insights on Water Buffalo Genomic Diversity and Post-Domestication Migration Routes From Medium Density SNP Chip Data

Autor(es):Mostrar menos -

Colli, Licia ^{[1, 2]} ; Milanesi, Marco ^{[1, 3, 4]} ; Vajana, Elia ^[1] ; Iamartino, Daniela ^{[5, 6]} ; Bomba, Lorenzo ^[1] ; Puglisi, Francesco ^[7] ; Del Corvo, Marcello ^[1] ; Nicolazzi, Ezequiel L. ^[5] ; Ahmed, Sahar S. E. ^[8] ; Herrera, Jesus R. V. ^[9] ; Cruz, Libertado ^[9] ; Zhang, Shujun ^[10] ; Liang, Aixin ^[10] ; Hua, Guohua ^[10] ; Yang, Liguo ^[10] ; Hao, Xingjie ^[10] ; Zuo, Fuyuan ^[11] ; Lai, Song-Jia ^[12] ; Wang, Shuilian ^[13] ; Liu, Ruyu ^[14] ; Gong, Yundeng ^[15] ; Mokhber, Mahdi ^[16] ; Mao, Yongjiang ^[17] ; Guan, Feng ^[18] ; Vlaic, Augustin ^[19] ; Vlaic, Bogdan ^[19] ; Ramunno, Luigi ^[20] ; Cosenza, Gianfranco ^[20] ; Ahmad, Ali ^[21] ; Soysal, Ihsan ^[22] ; Unal, Emel O. ^[22] ; Ketudat-Cairns, Mariena ^[23] ; Garcia, Jose F. ^{[3, 4, 24]} ; Utsunomiya, Yuri T. ^{[4, 24]} ; Baruselli, Pietro S. ^[25] ; Amaral, Maria E. J. ^[26] ; Parnpai, Rangsun ^[23] ; Drummond, Marcela G. ^[27] ; Galbusera, Peter ^[28] ; Burton, James ^{[29, 30, 31, 32]} ; Hoal, Eileen ^{[33, 34]} ; Yusnizar, Yulnawati ^{[35, 36]} ; Sumantri, Cece ^[37] ; Moioli, Bianca ^[38] ; Valentini, Alessio ^[39] ; Stella, Alessandra ^[5] ; Williams, John L. ^[40] ; Ajmone-Marsan, Paolo ^{[1, 2]}

Afiliação do(s) autor(es):Mostrar menos -

^[1] Univ Cattolica Sacro Cuore, Dipartimento Sci Anim Nutr & Alimenti, Piacenza - Italy

^[2] Ctr Ric Biodiversita & DNA Ant BioDNA, Piacenza - Italy

^[3] Sao Paulo State Univ, Sch Vet Med, Dept Support Prod & Anim Hlth, Aracatuba - Brazil

^[4] IAEA, Colaborating Ctr Anim Genom & Bioinformat, Aracatuba - Brazil

^[5] PTP, Sci Pk, Lodi - Italy

^[6] LGS AIA Assoc Italiana Allevatori, Cremona - Italy

^[7] Univ Parma, Dipartimento Sci Biomed Biotecnol & Traslaz, Parma - Italy

^[8] Natl Res Ctr, Dept Cell Biol, Genet Engn & Biotechnol Res Div, Giza - Egypt

^[9] Philippine Carabao Ctr, Nueva Ecija - Philippines

^[10] Huazhong Agr Univ, Minist Educ, Key Lab Agr Anim Genet Breeding & Reprod, Wuhan, Hubei - Peoples R China

^[11] Southwest Univ, Dept Anim Husb, Chongqing - Peoples R China

^[12] Sichuan Agr Univ, Inst Anim Genet & Breeding, Chengdu, Sichuan - Peoples R China

^[13] Hunan Agr Univ, Coll Vet Med, Changsha, Hunan - Peoples R China

^[14] Guizhou Univ, Coll Anim Sci, Guiyang, Guizhou - Peoples R China

^[15] Enshi Technol Coll, Enshi - Peoples R China

^[16] Urmia Univ, Fac Agr Sci, Dept Anim Sci, Orumiyeh - Iran

^[17] Yangzhou Univ, Coll Anim Sci & Technol, Yangzhou, Jiangsu - Peoples R China

^[18] China Jiliang Univ, Coll Life Sci, Hangzhou, Zhejiang - Peoples R China

^[19] Univ Agr Sci & Vet Med, Fac Anim Sci & Biotechnol, Dept Anim Genet, Cluj Napoca - Romania

^[20] Univ Naples Federico II, Dept Agr, Portici - Italy

^[21] COMSATS Inst Informat Technol, Sahiwal - Pakistan

^[22] Namik Kemal Univ, Fac Agr, Dept Anim Sci, Tekirdag - Turkey

^[23] Suranaree Univ Technol, Sch Biotechnol, Nakhon Ratchasima - Thailand

^[24] Sao Paulo State Univ Unesp, Sch Agr & Vet Sci, Dept Prevent Vet Med & Anim Reprod, Sao Paulo - Brazil

^[25] Univ Sao Paulo, Fac Med Vet & Zool, Sao Paulo - Brazil

^[26] Univ Estadual Paulista, Inst Biociencias Letras & Ciencias Exatas, Sao Jose do Rio Preto - Brazil

^[27] Myleus, R&D Dept, Belo Horizonte, MG - Brazil

^[28] Royal Zool Soc Antwerp, Ctr Res & Conservat, Antwerp - Belgium

^[29] IUCN SSC Asian Wild Cattle Specialist Grp, Upton By Chester - England

^[30] Chester Zoo, Upton By Chester - England

^[31] Univ Edinburgh, Royal Dick Sch Vet Studies, Roslin, Midlothian - Scotland

^[32] Univ Edinburgh, Roslin Inst, Roslin, Midlothian - Scotland

^[33] Stellenbosch Univ, NRF DST Ctr Excellence Biomed TB Res, MRC Ctr TB Res, Tygerberg - South Africa

^[34] Stellenbosch Univ, Div Mol Biol & Human Genet, Tygerberg - South Africa

^[35] Indonesian Inst Sci, Res Ctr Biotechnol, Jakarta - Indonesia

^[36] Indonesian Buffalo Conservat & Breeding Ctr, Ciapus Bogor - Indonesia

^[37] Bogor Agr Univ IPB, Dept Anim Prod & Technol, Bogor - Indonesia

^[38] Consiglio Ric Agr & Anal Econ Agr, Monterotondo - Italy

^[39] Univ Tuscia, DIBAF, Dipartimento Innovaz Sistemi Biol Agroalimentari, Viterbo - Italy

^[40] Univ Adelaide, Sch Anim & Vet Sci, Davies Res Ctr, Roseworthy, SA - Australia

• Tipo de documento: Artigo Científico
• Fonte: FRONTIERS IN GENETICS; v. 9, MAR 2 2018.
• Citações Web of Science: 7

Resumo

The domestic water buffalo is native to the Asian continent but through historical migrations and recent importations, nowadays has a worldwide distribution. The two types of water buffalo, i.e., river and swamp, display distinct morphological and behavioral traits, different karyotypes and also have different purposes and geographical distributions. River buffaloes from Pakistan, Iran, Turkey, Egypt, Romania, Bulgaria, Italy, Mozambique, Brazil and Colombia, and swamp buffaloes from China, Thailand, Philippines, Indonesia and Brazil were genotyped with a species-specificmedium-density 90K SNP panel. We estimated the levels of molecular diversity and described population structure, which revealed historical relationships between populations and migration events. Three distinct gene pools were identified in pure river as well as in pure swamp buffalo populations. Genomic admixture was seen in the Philippines and in Brazil, resulting from importations of animals for breed improvement. Our results were largely consistent with previous archeological, historical and molecular-based evidence for two independent domestication events for river-and swamp-type buffaloes, which occurred in the Indo-Pakistani region and close to the China/Indochina border, respectively. Based on a geographical analysis of the distribution of diversity, our evidence also indicated that the water buffalo spread out of the domestication centers followed two major divergent migration directions: river buffaloes migrated west from the Indian sub-continent while swamp buffaloes migrated from northern Indochina via an east-south-eastern route. These data suggest that the current distribution of water buffalo diversity has been shaped by the combined effects of multiple migration events occurred at different stages of the post-domestication history of the species. (AU)

• Processo FAPESP: 16/05787-7 - Combinando tecnologias genômicas (SNP chips e sequenciamento de última geração) para mapear variantes genéticas desvantajosas em bovinos da raça Nelore
• Beneficiário: Marco Milanesi
• Modalidade de apoio: Bolsas no Brasil - Pós-Doutorado