| Full text | |
| Author(s): |
Peres, Felipe Vaz
;
Riano-Pachon, Diego Mauricio
;
Stadler, PF
;
Walter, MEMT
;
Hernandez-Rosales, M
;
Brigido, MM
Total Authors: 6
|
| Document type: | Journal article |
| Source: | ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, BSB 2021; v. 13063, p. 4-pg., 2021-01-01. |
| Abstract | |
We present ContFree-NGS, an open source software that removes reads originating from contaminant organisms in your sequencing dataset. The user has to provide a target taxon, and anything that does not belong to this taxon or its descendants will be labelled as contaminant. In order to achieve this, ContFreeNGS exploits results from a taxonomy assignment engine, like Kraken2 or Kaiju. (AU) | |
| FAPESP's process: | 19/24796-5 - Inference and annotation of the sugarcane pantranscriptome |
| Grantee: | Felipe Vaz Peres |
| Support Opportunities: | Scholarships in Brazil - Scientific Initiation |