Evaluating food web interactions among microcrustaceans and insect in a tropical shallow lake using DNA-based protocol

Author(s)

Domingos, Andres R. ; Carvalho-Batista, Abner ; Robles, Rafael ; Arcifa, Marlene S. ; Mantelatto, Fernando L.

• Document type: Journal article
• Source: MITOCHONDRIAL DNA PART A; v. 32, n. 5-8, p. 10-pg., 2023-11-01.

Abstract

We developed species-specific primers of five microcrustacean preys, Ceriodaphnia richardi, Diaphanosoma cf. brevireme, Daphnia gessneri, Simocephalus serrulatus, Thermocyclops decipiens and Mesocyclops sp., to analyze food-web interactions involving their two insect predators Rheumatobates crassifemur and Martarega uruguayensis distributed in a tropical shallow lake. We designed internal primers of the COI gene (177-282 bp), and tested them, by means of PCR, for specificity and sensitivity. In our tests for specificity, all primers successfully amplified the DNA target but were species-specific failing to amplify the biomarker from any of the other species tested, even in a mixed DNA sample, including predators' DNA. In tests for sensitivity, primers successfully amplified zooplankton biomarkers from low concentration of DNA extractions and also from digestive tract of predators, even after many hours of ingestion. This technique provides a framework as an efficient tool for evaluation of food-web research in natural aquatic environments, where it is impossible to observe if predation occurs. Furthermore, this technique provides an effective solution for the identification of zooplankton species from the predator's digestive tract, where morphological identification alone is sometimes difficult because predators do not consume the prey but feeds using extra-oral digestion, such is the case of heteropterans. (AU)

• FAPESP's process: 18/13685-5 - Integrative analysis of the Brazilian fauna of decapod crustaceans: taxonomy, phylogenetic systematics, spermiotaxonomy, morphology of post-embryonic development, ecology and conservation
• Grantee: Fernando Luis Medina Mantelatto
• Support Opportunities: BIOTA-FAPESP Program - Thematic Grants
• FAPESP's process: 10/50188-8 - Decapod crustaceans: multi-disciplinary characterization of the sea biodiversity of the State of São Paulo (taxonomy, spermiotaxonomy, molecular biology and population dynamics)
• Grantee: Fernando Luis Medina Mantelatto
• Support Opportunities: BIOTA-FAPESP Program - Thematic Grants