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Creation of an Allosteric Endoxylanase by Directed Evolution for application in Industrial Biotechnology

Grant number: 10/07133-8
Support Opportunities:Scholarships in Brazil - Doctorate
Start date: October 01, 2010
End date: September 30, 2013
Field of knowledge:Biological Sciences - Biochemistry - Molecular Biology
Principal Investigator:Richard John Ward
Grantee:Lucas Ferreira Ribeiro
Host Institution: Faculdade de Medicina de Ribeirão Preto (FMRP). Universidade de São Paulo (USP). Ribeirão Preto , SP, Brazil
Associated research grant:08/57908-6 - National Institute of Science and Technology of Bioethanol, AP.BIOEN.TEM

Abstract

The project proposes the use of a new approach for directed evolution. It allows the creation of allosteric proteins by In Vitro Recombination of Nonhomologous Genes. This technique allows to "evolve" enzymes so it can be stimulated by the product, without the need to change the catalytic site, which could lead to a decrease in enzymatic activity. Using a library of random domain insertion, which had its variability increased by random circular permutation of one domain, we can then select chimeric mutant proteins with allosteric properties. It will be adopted as a model for studying an enzyme with industrial applications and feature mesophilic (Bacillus subtilis endoxylanase A). This will randomly link a periplasmic binding protein to D-xylose (XBP), aiming to create a domain interface, which could lead to a positive modulation on xylanase activity, due to the binding of D-xylose. This strategy will provide a more detailed study of molecular mapping which will provide an interesting platform to explore the structural basis on how to evolve the allosteric in nature.

News published in Agência FAPESP Newsletter about the scholarship:
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Scientific publications (6)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
TULLMAN, JENNIFER; NICHOLES, NATHAN; DUMONT, MATT R.; RIBEIRO, LUCAS F.; OSTERMEIER, MARC. Enzymatic protein switches built from paralogous input domains. Biotechnology and Bioengineering, v. 113, n. 4, p. 852-858, . (10/07133-8)
RIBEIRO, LUCAS FERREIRA; TULLMAN, JENNIFER; NICHOLES, NATHAN; BERGAMACHI SILVA, SERGIO RUSCHI; VIEIRA, DAVI SERRADELLA; OSTERMEIER, MARC; WARD, RICHARD JOHN. A xylose-stimulated xylanase-xylose binding protein chimera created by random nonhomologous recombination. BIOTECHNOLOGY FOR BIOFUELS, v. 9, . (10/18850-2, 10/10184-3, 10/07133-8)
RIBEIRO, LUCAS F.; BRESSAN, FABIANA; FURTADO, GILVAN P.; MEIRELES, FLAVIO; WARD, RICHARD J.. D-Xylose detection in Escherichia coli by a xylose binding protein-dependent response. Journal of Biotechnology, v. 168, n. 4, p. 440-445, . (10/18850-2, 10/07133-8)
FONSECA-MALDONADO, RAQUEL; RIBEIRO, LUCAS F.; FURTADO, GILVAN P.; ARRUDA, LETICIA M.; MELEIRO, LUANA P.; ALPONTI, JULIANA S.; BOTELHO-MACHADO, CARLA; VIEIRA, DAVI S.; BONNEIL, ERIC; MELO FURRIEL, ROSA DOS PRAZERES; et al. Synergistic action of co-expressed xylanase/laccase mixtures against milled sugar cane bagasse. Process Biochemistry, v. 49, n. 7, p. 1152-1161, . (10/18850-2, 08/05181-5, 10/07133-8, 07/01623-0)
RIBEIRO, LILIANE F. C.; DE LUCAS, ROSYMAR C.; VITCOSQUE, GABRIELA L.; RIBEIRO, LUCAS F.; WARD, RICHARD J.; RUBIO, MARCELO V.; DAMASIO, ANDRE R. L.; SQUINA, FABIO M.; GREGORY, REBECCA C.; WALTON, PAUL H.; et al. A novel thermostable xylanase GH10 from Malbranchea pulchella expressed in Aspergillus nidulans with potential applications in biotechnology. BIOTECHNOLOGY FOR BIOFUELS, v. 7, . (10/18850-2, 12/12859-3, 13/18910-3, 10/07133-8, 10/10184-3, 12/02017-5, 08/57908-6)
FURTADO, GILVAN P.; SANTOS, CAMILA R.; CORDEIRO, ROSA L.; RIBEIRO, LUCAS F.; DE MORAES, LUIZ A. B.; DAMASIO, ANDR R. L.; POLIZELI, MARIA DE LOURDES T. M.; LOURENZONI, MARCOS R.; MURAKAMI, MARIO T.; WARD, RICHARD J.. Enhanced xyloglucan-specific endo-beta-1,4-glucanase efficiency in an engineered CBM44-XegA chimera. Applied Microbiology and Biotechnology, v. 99, n. 12, p. 5095-5107, . (10/18850-2, 12/20549-4, 13/18910-3, 13/13309-0, 14/07135-1, 10/07133-8)