Gene Selection and Clustering Validation in Gene Expression Data

• Grant number: 11/04247-5
• Support Opportunities: Scholarships in Brazil - Doctorate
• Start date: June 01, 2011
• End date: November 30, 2015
• Field of knowledge: Physical Sciences and Mathematics - Computer Science
• Principal Investigator: Ricardo José Gabrielli Barreto Campello
• Grantee: Pablo Andretta Jaskowiak
• Host Institution: Instituto de Ciências Matemáticas e de Computação (ICMC). Universidade de São Paulo (USP). São Carlos , SP, Brazil
• Associated scholarship(s): 12/15751-9 - Gene selection and Outliers in microarray data, BE.EP.DR

Scientific publications

(7)

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

JASKOWIAK, PABLO A.; CAMPELLO, RICARDO J. G. B.; COSTA, IVAN G.. On the selection of appropriate distances for gene expression data clustering. BMC Bioinformatics, v. 15, p. 17-pg., 2014-01-24. (11/04247-5, 12/15751-9)

JASKOWIAK, PABLO A.; CAMPELLO, RICARDO J. G. B.; COSTA, IVAN G.. On the selection of appropriate distances for gene expression data clustering. BMC Bioinformatics, v. 15, n. 2, JAN 24 2014. (12/15751-9, 11/04247-5)

JASKOWIAK, PABLO ANDRETTA; COSTA, IVAN G.; CAMPELLO, RICARDO J. G. B.. Clustering of RNA-Seq samples: Comparison study on cancer data. METHODS, v. 132, p. 42-49, JAN 1 2018. (11/04247-5)

DE SOUTO, MARCILIO C. P.; JASKOWIAK, PABLO A.; COSTA, IVAN G.. Impact of missing data imputation methods on gene expression clustering and classification. BMC Bioinformatics, v. 16, FEB 26 2015. (11/04247-5)

JASKOWIAK, PABLO A.; MOULAVI, DAVOUD; FURTADO, ANTONIO C. S.; CAMPELLO, RICARDO J. G. B.; ZIMEK, ARTHUR; SANDER, JOERG. On strategies for building effective ensembles of relative clustering validity criteria. KNOWLEDGE AND INFORMATION SYSTEMS, v. 47, n. 2, p. 329-354, MAY 2016. (12/15751-9, 10/20032-6, 11/04247-5)

JASKOWIAK, PABLO A.; CAMPELLO, RICARDO J. G. B.; COSTA, IVAN G.. Proximity Measures for Clustering Gene Expression Microarray Data: A Validation Methodology and a Comparative Analysis. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, v. 10, n. 4, p. 845-857, JUL-AUG 2013. (11/04247-5)

JASKOWIAK, PABLO A.; COSTA, IVAN G.; CAMPELLO, RICARDO J. G. B.. The area under the ROC curve as a measure of clustering quality. DATA MINING AND KNOWLEDGE DISCOVERY, v. 36, n. 3, p. 27-pg., 2022-04-26. (11/04247-5)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

JASKOWIAK, Pablo Andretta. On the evaluation of clustering results: measures, ensembles, and gene expression data analysis. 2015. Doctoral Thesis - Universidade de São Paulo (USP). Instituto de Ciências Matemáticas e de Computação (ICMC/SB) São Carlos.