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Harnessing Phylogenomic Comparative Methods to Understand the Diversification of Fishes of the Superfamily Loricarioidea

Grant number: 14/05051-5
Support Opportunities:Scholarships in Brazil - Post-Doctoral
Start date: November 01, 2014
End date: August 31, 2018
Field of knowledge:Biological Sciences - Genetics - Animal Genetics
Agreement: Coordination of Improvement of Higher Education Personnel (CAPES)
Principal Investigator:Claudio de Oliveira
Grantee:Fábio Fernandes Roxo
Host Institution: Instituto de Biociências (IBB). Universidade Estadual Paulista (UNESP). Campus de Botucatu. Botucatu , SP, Brazil
Associated scholarship(s):15/00691-9 - Harnessing Phylogenomic Comparative Methods to Understand the Diversification of Fishes of the Superfamily Loricarioidea, BE.EP.PD

Abstract

The Loricarioidea is the largest monophyletic group of catfishes endemic to the Neotropics with about 1,412 valid species assigned to six family-level taxa; Astroblepidae (61 species), Callichthyidae (200 species), Loricariidae (870 species), Nematogenyidae (1 species), Scoloplacidae (6 species) and Trichomycteridae (273 species). Loricarioid fishes are widely distributed throughout freshwater habitats in tropical South America and southern Central America. In addition to their exceptional species richness, loricarioids exhibit an wide range of morphological, physiological and ecological specializations, occupying many habitats and trophic levels, including obligate herbivores, parasites (Vandelia) and the only known wood-eating fish species (Panaque). The sucker-shaped mouth and spoon-shaped teeth morphologies of loricariids allows many species to forage on algae and cling to substrate surfaces, and astroblepids even have the ability to climb waterfalls. The great diversity of loricarioid fishes provides abundant materials for the study of fundamental questions in evolution and ecology: What intrinsic organismal and external environmental factors promoted or restricted diversification within loricarioid clades? Why do some clades have such high species richness (as Loricariidae with 870 species) whereas other clades have such low diversity (as Nematogenyidae with 1 species, or Scoloplacidae with 6 species)? How can a dozen or more species from a single subfamily, all with seemingly equivalent ecological requirements in terms of habitat and food resources, coexist sympatrically within a single river system? Therefore, we propose to combine the intellectual and genetic resources of researchers in the US and in Brazil to reconstruct the phylogeny of Loricarioidea, assessing the most species-dense taxon sampling of these groups to date to study the diversification dynamics and understand the distributions of species and ecosystems in light of Earth history processes that shape landscape evolution.

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Scientific publications (37)
(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; OLIVEIRA, CLAUDIO. Description of a new species of Parotocinclus (Siluriformes, Hypoptopomatinae) from the rio Tapajos basin. ZOOKEYS, n. 634, p. 125-136, . (12/01622-2, 15/00691-9, 14/05051-5)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; OCHOA, LUZ E.; OLIVEIRA, CLAUDIO. Description of a new genus and three new species of Otothyrinae (Siluriformes, Loricariidae). ZOOKEYS, n. 534, p. 103-134, . (12/01622-2, 14/06853-8, 14/05051-5)
SILVA, GABRIEL S. C.; ROXO, FABIO F.; OLIVEIRA, CLAUDIO. Two new species of Pseudancistrus (Siluriformes, Loricariidae) from the Amazon basin, northern Brazil. ZOOKEYS, n. 482, p. 21-34, . (12/01622-2, 14/05051-5)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; OLIVEIRA, CLAUDIO. A new species of Hisonotus (Siluriformes, Loricariidae) from rio Sao Francisco basin, Brazil. ZOOKEYS, n. 498, p. 127-143, . (12/01622-2, 14/05051-5)
DIAS, ANGELICA C.; SILVA, GABRIEL S. C.; OLIVEIRA, CLAUDIO; ROXO, FABIO F.. A new species of Hisonotus (Siluriformes: Loricariidae) from Aripuana river, Amazon basin, Brazil. Zootaxa, v. 4504, n. 4, p. 577-585, . (14/05051-5)
OCHOA, LUZ E.; ROXO, FABIO F.; DONASCIMIENTO, CARLOS; SABAJ, MARK H.; DATOVO, ALESSI; ALFARO, MICHAEL; OLIVEIRA, CLAUDIO. Multilocus analysis of the catfish family Trichomycteridae (Teleostei: Ostariophysi: Siluriformes) supporting a monophyletic Trichomycterinae. Molecular Phylogenetics and Evolution, v. 115, p. 71-81, . (15/13382-4, 14/06853-8, 14/26508-3, 15/00691-9, 10/17009-2, 14/05051-5)
OCHOA, LUZ E.; DATOVO, ALESSIO; DONASCIMIENTO, CARLOS; ROXO, FABIO F.; SABAJ, MARK H.; CHANG, JONATHAN; MELO, BRUNO F.; SILVA, GABRIEL S. C.; FORESTI, FAUSTO; ALFARO, MICHAEL; et al. Phylogenomic analysis of trichomycterid catfishes (Teleostei: Siluriformes) inferred from ultraconserved elements. SCIENTIFIC REPORTS, v. 10, n. 1, . (15/13382-4, 14/06853-8, 14/26508-3, 16/11313-8, 15/00691-9, 16/19075-9, 14/05051-5)
ROXO, FABIO F.; DIAS, ANGELICA C.; SILVA, GABRIEL S. C.; OLIVEIRA, CLAUDIO. Two new species of Curculionichthys (Siluriformes: Loricariidae) from the rio Amazonas basin, Brazil. Zootaxa, v. 4341, n. 2, p. 258-270, . (15/00691-9, 14/05051-5)
TAGLIACOLLO, VICTOR A.; ROXO, FABIO FERNANDES; DUKE-SYLVESTER, SCOTT M.; OLIVEIRA, CLAUDIO; ALBERT, JAMES S.. Biogeographical signature of river capture events in Amazonian lowlands. Journal of Biogeography, v. 42, n. 12, p. 2349-2362, . (14/05051-5, 12/09990-0)
MATEUSSI, NADAYCA T. B.; MELO, BRUNO F.; OTA, RAFAELA P.; ROXO, FABIO F.; OCHOA, LUZ E.; FORESTI, FAUSTO; OLIVEIRA, CLAUDIO. Phylogenomics of the Neotropical fish family Serrasalmidae with a novel intrafamilial classification (Teleostei: Characiformes). Molecular Phylogenetics and Evolution, v. 153, . (15/00691-9, 14/06853-8, 18/23883-9, 18/24040-5, 16/11313-8, 16/09204-6, 18/20610-1, 14/05051-5, 14/26508-3)
AZEVEDO-SANTOS, VALTER M.; ROXO, FABIO F.. A new species of the genus Pareiorhina (Teleostei: Siluriformes: Loricariidae) from the upper rio Parana basin, southeastern Brazil. Zootaxa, v. 3937, n. 2, p. 377-384, . (14/05051-5)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; OCHOA, LUZ ENEIDA; ZAWADZKI, CLAUDIO H.. Description of a new species of Gymnotocinclus from the rio Tocantins basin with phylogenetic analysis of the subfamily Hypoptopomatinae (Siluriformes: Loricariidae). Zootaxa, v. 4268, n. 3, p. 337-359, . (12/01622-2, 14/05051-5)
SILVA, GABRIEL S. C.; ROXO, FABIO F.; OYAKAWA, OSVALDO T.. Description of a new species of Pareiorhina (Siluriformes: Loricariidae) from the rio Sao Francisco basin, Brazil. Zootaxa, v. 4107, n. 3, p. 381-391, . (12/01622-2, 15/00691-9, 14/05051-5)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; WALTZ, BRANDON T.; MELO, JORGE E. G.. A new species of Hisonotus (Siluriformes: Otothyrinae) from the upper rio Parana and rio Sao Francisco basins, Brazil. Zootaxa, v. 4109, n. 2, p. 227-238, . (12/01622-2, 14/05051-5)
ZAWADZKI, CLAUDIO H.; ROXO, FABIO F.; DA GRACA, WEFERSON J.. Hisonotus pachysarkos, a new species of cascudinho from the rio Ivai basin, upper rio Parana system, Brazil (Loricariidae: Otothyrinae). Ichthyological Exploration of Freshwaters, v. 26, n. 4, p. 373-383, . (15/00691-9, 14/05051-5)
SILVA, GABRIEL S. C.; COVAIN, RAPHAEL; OLIVEIRA, CLAUDIO; ROXO, FABIO F.. Description of two new species of Lithoxus (Hypostominae: Loricariidae) from rio Jari and rio Amapa basins, Brazilian Guiana Shield. Zootaxa, v. 4347, n. 1, p. 151-168, . (15/00691-9, 14/05051-5)
FAIRCLOTH, BRANT C.; ALDA, FERNANDO; HOEKZEMA, KENDRA; BURNS, MICHAEL D.; OLIVEIRA, CLAUDIO; ALBERT, JAMES S.; MELO, BRUNO F.; OCHOA, LUZ E.; ROXO, FABIO F.; CHAKRABARTY, PROSANTA; et al. A Target Enrichment Bait Set for Studying Relationships among Ostariophysan Fishes. Copeia, v. 108, n. 1, p. 47-60, . (16/11313-8, 14/26508-3, 14/06853-8, 14/05051-5)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; OLIVEIRA, CLAUDIO. Description of a new species of Parotocinclus (Siluriformes, Hypoptopomatinae) from the rio Tapajos basin. ZOOKEYS, v. N/A, n. 634, p. 12-pg., . (15/00691-9, 14/05051-5, 12/01622-2)
SILVA, GABRIEL S. C.; ROXO, FABIO F.; OLIVEIRA, CLAUDIO. Two new species of Pseudancistrus (Siluriformes, Loricariidae) from the Amazon basin, northern Brazil. ZOOKEYS, v. N/A, n. 482, p. 14-pg., . (14/05051-5, 12/01622-2)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; OLIVEIRA, CLAUDIO. A new species of Hisonotus (Siluriformes, Loricariidae) from rio Sao Francisco basin, Brazil. ZOOKEYS, v. N/A, n. 498, p. 17-pg., . (14/05051-5, 12/01622-2)
SOUZA, CAMILA S.; COSTA-SILVA, GUILHERME J.; ROXO, FABIO F.; FORESTI, FAUSTO; OLIVEIRA, CLAUDIO. Genetic and Morphological Analyses Demonstrate That Schizolecis guntheri (Siluriformes: Loricariidae) Is Likely to Be a Species Complex. FRONTIERS IN GENETICS, v. 9, . (15/00691-9, 14/05051-5)
SILVA, GABRIEL S. C.; ROXO, FABIO F.; SOUZA, CAMILA S.; OLIVEIRA, CLAUDIO. Two new species of Corumbataia (Hypoptopomatinae: Loricariidae) from Rio Corrente, upper Rio Parana basin, Brazil. Zootaxa, v. 4483, n. 2, p. 317-330, . (14/26508-3, 14/05051-5)
ROXO, FABIO F.; MELO, BRUNO F.; SILVA, GABRIEL S. C.; OLIVEIRA, CLAUDIO. New species of Parotocinclus (Siluriformes: Loricariidae) from coastal drainages of Rio de Janeiro, southeastern Brazil. Zootaxa, v. 4232, n. 2, p. 260-270, . (15/00691-9, 14/05051-5)
SILVA, GABRIEL S. C.; ROXO, FABIO F.; LUJAN, NATHAN K.; TAGLIACOLLO, VICTOR A.; ZAWADZKI, CLAUDIO H.; OLIVEIRA, CLAUDIO. Transcontinental dispersal, ecological opportunity and origins of an adaptive radiation in the Neotropical catfish genus Hypostomus (Siluriformes: Loricariidae). Molecular Ecology, v. 25, n. 7, p. 1511-1529, . (12/01622-2, 15/00691-9, 14/05051-5)
ROXO, FABIO F.; OCHOA, LUZ E.; SABAJ, MARK H.; LUJAN, NATHAN K.; COVAIN, RAPHAEL; SILVA, GABRIEL S. C.; MELO, BRUNO F.; ALBERT, JAMES S.; CHANG, JONATHAN; FORESTI, FAUSTO; et al. Phylogenomic reappraisal of the Neotropical catfish family Loricariidae (Teleostei: Siluriformes) using ultraconserved elements. Molecular Phylogenetics and Evolution, v. 135, p. 148-165, . (12/01622-2, 14/06853-8, 14/26508-3, 16/11313-8, 15/00691-9, 14/05051-5)
OCHOA, LUZ ENEIDA; PEREIRA, LUIZ HENRIQUE G.; COSTA-SILVA, GUILHERME JOSE; ROXO, FABIO F.; BATISTA, JACQUELINE S.; FORMIGA, KYARA; FORESTI, FAUSTO; OLIVEIRA, CLAUDIO. Genetic structure and historical diversification of catfish Brachyplatystoma platynemum (Siluriformes: Pimelodidae) in the Amazon basin with implications for its conservation. ECOLOGY AND EVOLUTION, v. 5, n. 10, p. 2005-2020, . (14/06853-8, 14/05051-5)
ROXO, FABIO F.; LUJAN, NATHAN K.; TAGLIACOLLO, VICTOR A.; WALTZ, BRANDON T.; SILVA, GABRIEL S. C.; OLIVEIRA, CLAUDIO; ALBERT, JAMES S.. Shift from slow- to fast-water habitats accelerates lineage and phenotype evolution in a clade of Neotropical suckermouth catfishes (Loricariidae: Hypoptopomatinae). PLoS One, v. 12, n. 6, . (12/01622-2, 15/00691-9, 14/05051-5)
SILVA, GABRIEL S. C.; ROXO, FABIO F.; MELO, BRUNO F.; OLIVEIRA, CLAUDIO. New species of Curculionichthys (Siluriformes: Loricariidae) from the eastern Guiana Shield. Zootaxa, v. 4175, n. 3, p. 281-291, . (12/01622-2, 15/00691-9, 14/26508-3, 14/05051-5)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; ZAWADZKI, CLAUDIO H.; OLIVEIRA, CLAUDIO. Neoplecostomus canastra, a new catfish (Teleostei: Siluriformes) species from upper Rio Parana basin. Zootaxa, v. 4294, n. 2, p. 226-240, . (12/01622-2, 15/00691-9, 14/05051-5)
COSTA-SILVA, GUILHERME J.; RODRIGUEZ, MONICA S.; ROXO, FABIO F.; FORESTI, FAUSTO; OLIVEIRA, CLAUDIO. Using Different Methods to Access the Difficult Task of Delimiting Species in a Complex Neotropical Hyperdiverse Group. PLoS One, v. 10, n. 9, . (14/05051-5)
ROXO, F. F.; SILVA, G. S. C.; MELO, B. F.. Hisonotus devidei, a new species from the SAo Francisco basin, Brazil (Siluriformes: Loricariidae). Journal of Fish Biology, v. 92, n. 6, p. 1687-1701, . (16/11313-8, 14/05051-5)
MELO, BRUNO F.; SIDLAUSKAS, BRIAN L.; NEAR, THOMAS J.; ROXO, FABIO F.; GHEZELAYAGH, AVA; OCHOA, LUZ E.; STIASSNY, MELANIE L. J.; ARROYAVE, JAIRO; CHANG, JONATHAN; FAIRCLOTH, BRANT C.; et al. ccelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishe. Systematic Biology, v. 71, n. 1, p. 78-92, . (14/06853-8, 14/05051-5, 18/24040-5, 15/00691-9, 16/11313-8, 18/23883-9, 14/26508-3)
MELO, BRUNO F.; SIDLAUSKAS, BRIAN L.; NEAR, THOMAS J.; ROXO, FABIO F.; GHEZELAYAGH, AVA; OCHOA, LUZ E.; STIASSNY, MELANIE L. J.; ARROYAVE, JAIRO; CHANG, JONATHAN; FAIRCLOTH, BRANT C.; et al. ccelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishe. Systematic Biology, v. 71, n. 1, p. 78-92, . (14/05051-5, 16/11313-8, 15/00691-9, 18/24040-5, 18/23883-9, 14/26508-3, 14/06853-8)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; ZAWADZKI, CLAUDIO H.; OLIVEIRA, CLAUDIO. Neoplecostomus canastra, a new catfish (Teleostei: Siluriformes) species from upper Rio Parana basin. Zootaxa, v. 4294, n. 2, p. 15-pg., . (12/01622-2, 15/00691-9, 14/05051-5)
ROXO, FABIO F.; SILVA, GABRIEL S. C.; OCHOA, LUZ E.; OLIVEIRA, CLAUDIO. Description of a new genus and three new species of Otothyrinae (Siluriformes, Loricariidae). ZOOKEYS, v. N/A, n. 534, p. 32-pg., . (14/06853-8, 12/01622-2, 14/05051-5)