Environmental DNA metabarcoding for detecting declining and disappeared amphibians species in southern Brazilian Atlantic forest

• Grant number: 19/04849-7
• Support Opportunities: Scholarships abroad - Research Internship - Post-doctor
• Start date: July 01, 2019
• End date: February 29, 2020
• Field of knowledge: Biological Sciences - Zoology
• Principal Investigator: Célio Fernando Baptista Haddad
• Grantee: Carla Martins Lopes
• Supervisor: Anthony Ari Chariton
• Host Institution: Instituto de Biociências (IB). Universidade Estadual Paulista (UNESP). Campus de Rio Claro. Rio Claro , SP, Brazil
• Institution abroad: Macquarie University, Australia
• Associated to the scholarship: 16/14054-3 - Environmental DNA applied to monitoring and conservation studies of anurans in the Brazilian Atlantic Forest, BP.PD

Abstract

Brazil has the highest amphibian diversity in the world, with over 1000 described species. In the southern Brazilian Atlantic forest researchers are reporting population declines and disappearances of amphibians, mainly after the 1970's. Most of these species is not classified in any level of threat in the IUCN red list, mainly due to the lack of information about their biology and geographical distributions. Search for DNA traces of these amphibian species that can remain in the environment (environmental DNA or eDNA) would allow us to monitor a wide geographical range in a short period of time, without the need for direct observation of individuals, and would ultimately increase our ability to survey the species. The aim of this study is therefore to provide information about the conservation status of declining or potentially disappeared amphibian species from southern Brazilian Atlantic forest, to be applied in conservation actions. We will analyze water samples from six sites using the eDNA metabarcoding approach to search for DNA traces of the target amphibian species. The results obtained will improve our knowledge about the geographical distribution of these species and whether the researches observations reflect true declines or disappearances of amphibians.

Scientific publications

(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)

LOPES, CARLA MARTINS; BECKER, C. GUILHERME; BAETA, DELIO; DE CARLI MONTEIRO, JULIANE PETRI; LYRA, MARIANA LUCIO; ZAMUDIO, KELLY RAQUEL; CHARITON, ANTHONY; HADDAD, CELIO FERNANDO BAPTISTA. Simultaneous Detection of Missing Amphibians and Their Fungal Pathogen in a Biodiversity Hotspot Using eDNA. Molecular Ecology, v. N/A, p. 12-pg., 2025-08-08. (19/04849-7, 16/14054-3, 13/50741-7)