Advanced search
Start date
Betweenand

Protein exosites, cryptic sites and moonlighting: identification, functional mapping and structural alteration effects

Grant number: 23/02691-2
Support Opportunities:Scholarships in Brazil - Post-Doctoral
Start date: April 01, 2023
End date: March 31, 2026
Field of knowledge:Biological Sciences - Biophysics - Molecular Biophysics
Principal Investigator:Ljubica Tasic
Grantee:Folorunsho Bright Omage
Host Institution: Instituto de Química (IQ). Universidade Estadual de Campinas (UNICAMP). Campinas , SP, Brazil
Associated research grant:20/08615-8 - Protein exosites, cryptic sites and moonlighting: identification, functional mapping and effects of changes in structure, AP.TEM

Abstract

The project involves the development of a multilayer approach to identify protein exositesusing data compilation and neural network training. A pipeline will be developed to identify potential protein partners using phage display experiments and co-localization information. The use of MRND will help identify protein-protein partners that interact at exosite loci. The project will also involvevirtual screening of compounds on the identified exosites of target proteins to identify potential candidates for medicines, taking into account the flexibility of pockets using a set approach. To the internal D-oligopeptide libraries will also be screened against identified pockets using asimilar approach. In addition to the above objectives, this project will also explore the use of NMR and metabolomics to further investigate exosites and identify potential drug candidates. these techniques will complement the other project methods and provide a more comprehensive understanding of the models.

News published in Agência FAPESP Newsletter about the scholarship:
More itemsLess items
Articles published in other media outlets ( ):
More itemsLess items
VEICULO: TITULO (DATA)
VEICULO: TITULO (DATA)

Scientific publications
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
BELLOT, PAULA EMILIA NUNES RIBEIRO; BRAGA, ERIK SOBRINHO; OMAGE, FOLORUNSHO BRIGHT; NUNES, FRANCISCA LEIDE DA SILVA; LIMA, SEVERINA CARLA VIEIRA CUNHA; LYRA, CLELIA OLIVEIRA; MARCHIONI, DIRCE MARIA LOBO; PEDROSA, LUCIA FATIMA CAMPOS; BARBOSA JR, FERNANDO; TASIC, LJUBICA; et al. Plasma lipid metabolites as potential biomarkers for identifying individuals at risk of obesity-induced metabolic complications. SCIENTIFIC REPORTS, v. 13, n. 1, p. 13-pg., . (16/20054-6, 18/24069-3, 14/50867-3, 22/11207-4, 23/02691-2)
MARTINS, LUCAS G.; MANZINI, BRUNA M.; MONTALVAO, SILMARA; HONORATO, MILLENE A.; COLELLA, MARINA P.; HAYAKAWA, GABRIELA G. Y.; DE PAULA, ERICH V.; ORSI, FERNANDA A.; BRAGA, ERIK S.; AVRAMOVIC, NATASA; et al. Mapping Thrombosis Serum Markers by 1H-NMR Allied with Machine Learning Tools. Molecules, v. 29, n. 24, p. 15-pg., . (21/07212-0, 16/14172-6, 23/02691-2, 14/50867-3, 18/24069-3)