Circandian rhythms in Gracilaria birdiae (Rhodophyta): oscilation of photosynthetic performance and enzymatic caracterization of nitrate reductase

Author(s)

Cícero Alves Lima Júnior

• Document type: Master's Dissertation
• Press: São Paulo.
• Institution: Universidade de São Paulo (USP). Conjunto das Químicas (IQ e FCF) (CQ/DBDCQ)
• Defense date: 2012-12-03

Examining board members

Pio Colepicolo Neto; Carlos Takeshi Hotta; Mariana Cabral de Oliveira

• Advisor: Pio Colepicolo Neto

Abstract

Circadian rhythms control most of physiological processes, including nitrate assimilation. This nutrient is the most incorporated form of nitrogen by marine plants and its assimilation is made by the nitrate reductase enzyme (NR) that is highly regulated in all levels expression, since mRNA transcription until protein degradation. Many factors coordinate this regulation, including the nitrate itself, light glutamate, kinases and by transcription factors of the central oscillator of the circadian rhythms. Photosynthesis also plays an especial role in NR regulation through carbon skeleton and NADPH synthesis that allows the last step of nitrate assimilation: glutamate synthesis. Gracilaria birdiae is an endemic marine rhodophyte from Brazil that still lacks physiological and molecular studies despite its extensively exploitation for agar-agar extraction. This study aimed the development of a large scale enzymatic assay of NR (NRA) and the analysis of daily oscillation of photosynthesis performance for G. birdiae. The algae, collected ant Rio Grande do Norte state, was isolated to a unialgal level and presented an average of relative daily growth rate of 6.5% in laboratory. The new protocol here described proposes the following adaptations for NRA: sampling of 20 mg instead of 100 mg, 100 µL of crude extract rather than 1 mL, NRA in 50 µL in place of 1 mL and reaction stop with sulphanilamide instead of an EtOH/ZnSO4 system. These changes allow the assay of the semi-purified NR of 24 samples all with its experimental and biological triplicates and negative control in 3 hours. Phosphate buffer at pH 8, 25°C, 60 minutes of incubation, 1.25 mMol of nitrate and 50 µMol of NADH. The maximum activity was 5.4 ± 0.7 nMol.min-1.mg-1 of protein and a KM of 6 ± 2.2 µMol.L-1 for NADH and of 109 ± 11 µMol.L-1 for nitrate. NR didn\'t show any activity in the presence of only NADPH as the electron donor and showed and 48 times greater activity in the new protocol, compared to the old one. We describe here an accurate and reproducible method for large scale NRA that can be used in comparative studies of NR kinetics or in biological rhythms of NR. The analysis of photosynthetic performance, made in 15 mg sampling of algal biomass, was characterized through chlorophyll fluorescence, revealing the maximum values of these parameters: relative electrons transfer rate (rETR) of 15,29 µMol elétrons.m-2.s-1, photosynthetic efficiency (the alpha parameter) of 0,37 photons/electrons, the saturating irradiance (IK) was 41.32 µE.m-2.s-1 and there was photoinhibition below the irradiance of 300 µE.m-2.s-1. The only variable that oscillated during the continuous light experiment and maintained the 24-hour period was the Alfa parameter, besides its 50% lower amplitude. This oscillation can be due to an endogenous control of the central circadian oscillator into proteins or pigments bound to the photosystem II, influencing the capacity of photon-electron transformation. At the same time, the acclimation to constant light could have driven the algae to a damping of pigment production and photoxidation, what explains the fall of alpha average values. G. birdiae is an alga with great economic and ecological relevance and this study confirms the potential for its establishment as a model organism. (AU)

• FAPESP's process: 10/04856-9 - Enzymatic activity and analysis of gene expression of Nitrate Reductase in the macrophyte Gracilaria Birdiae (Gracilariales, Rhodophyta) during light/dark cycle.
• Grantee: Cícero Alves Lima Júnior
• Support Opportunities: Scholarships in Brazil - Master