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Development of microsatellite DNA sequencies for the study of remnant populations of Broad-snouted caiman (Caiman latirostris), of central region of Sao Paulo State

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Author(s):
Rodrigo Barban Zucoloto
Total Authors: 1
Document type: Doctoral Thesis
Press: Piracicaba.
Institution: Universidade de São Paulo (USP). Centro de Energia Nuclear na Agricultura (CENA/STB)
Defense date:
Examining board members:
Luiz Lehmann Coutinho; Antonio Vargas de Oliveira Figueira; Fábio de Melo Sene; Luciano Martins Verdade; Claudia Barros Monteiro Vitorello
Advisor: Luiz Lehmann Coutinho
Abstract

New genetic markers were characterized for the broad-snouted caiman (Caiman latirostris) by constructing libraries enriched for microsatellite DNA. One microsatellite was developed from a (ACC/TGG)n enriched microsatellite DNA library and 12 from a (AC/TG)n enriched microsatellite DNA library. These markers were tested in Caiman latirostris individuals and resulted in seven new polymorphic microsatellites for the specie. Additionally four Alligator mississipiensis microsatellite markers previously transferred for Caiman latirostris were used. Samples from broad-snouted caimans from small wetlands associated with the Piracicaba River and some of its tributaries in the state of São Paulo, Brazil were used to study the genetic variation between populations and parentage between individuals. Genetic variability was detected among individuals from different sites, even those within a small geographic distance. The results suggest that the groups sampled at each site are composed predominantly of related individuals. A possible combination of high mortality and low natality rates in the fragmented Caiman latirostris populations may explain the low number of successfully dispersed individuals per generation observed between the sites studied. These markers might help to understand the metapopulation processes that are occurring within this species. (AU)