Integrated analysis of gene expression from carbon metabolism, proteome and metabolome, reveals altered primary metabolism in Eucalyptus grandis bark, in response to seasonal variation

Author(s)

Frasson Budzinski, Ilara Gabriela ^[1] ; Moon, David H. ^[1] ; Morosini, Julia Silva ^[1] ; Linden, Pernilla ^[2] ; Bragatto, Juliano ^[1] ; Moritz, Thomaz ^[2] ; Labate, Carlos Alberto ^[1]

Affiliation

^[1] Univ Sao Paulo, Escola Super Agr Luiz de Queiroz, Dept Genet, Lab Max Feffer Genet Plantas, BR-13418900 Piracicaba, SP - Brazil

^[2] Swedish Univ Agr Sci, Dept Forest Genet & Plant Physiol, Umea Plant Sci Ctr, SE-90183 Umea - Sweden

• Document type: Journal article
• Source: BMC PLANT BIOLOGY; v. 16, JUL 1 2016.
• Web of Science Citations: 3

Abstract

Background: Seasonal variation is presumed to play an important role in the regulation of tree growth, especially for Eucalyptus grandis, a fast-growing tree. This variation may induce changes in the whole tree at transcriptional, protein and metabolite levels. Bark represents an important group of tissues that protect trees from desiccation and pathogen attack, and it has been identified as potential feedstock for lignocellulosic derived biofuels. Despite the growing interest, little is known about the molecular mechanisms that regulates bark metabolism, particularly in tropical countries. Results: In this study we report the changes observed in the primary metabolism of E. grandis bark during two contrasting seasons in Brazil, summer (wet) and winter (dry), through the combination of transcripts (RT-qPCR), proteome (2-DE gels) and metabolome (GC-MS) analysis, in an integrated manner. Twenty-four genes, involved in carbon metabolism, were analyzed in the two seasons. Eleven were up-regulated in summer, three were up-regulated in winter and ten did not show statistical differences in the expression pattern. The proteomic analysis using 2-DE gels showed 77 proteins expressing differences in abundance, with 38 spots up-regulated in summer and 37 in winter. Different metabolites significantly accumulated during winter. Conclusions: This study revealed a metabolic reconfiguration in the primary metabolism of E. grandis bark, triggered by seasonal variation. Transcripts and protein data suggests that during winter carbohydrate formation seems to be favored by tree metabolism. Glucose, fructose and sucrose accumulated at significant levels during the winter. (AU)

• FAPESP's process: 08/50361-1 - Functional genomics applied to the discovery of eucalyptus rust resistance genes
• Grantee: Carlos Alberto Labate
• Support type: Research Grants - Research Partnership for Technological Innovation - PITE
• FAPESP's process: 09/00808-2 - Evaluation of the primary metabolism of eucalyptus grandis cambial region and bark
• Grantee: Ilara Gabriela Frasson Budzinski
• Support type: Scholarships in Brazil - Doctorate