Conformational preferences of N-acetyl-N-methylprolineamide in different media: a H-1 NMR and theoretical investigation

Author(s)

Braga, Carolyne B. ^[1] ; Silva, Weslley G. D. P. ^{[1, 2]} ; Rittner, Roberto ^[1]

Affiliation

^[1] Univ Estadual Campinas, Inst Chem, BR-13081970 Campinas, SP - Brazil

^[2] Univ Manitoba, Dept Chem, Winnipeg, MB R3T 2N2 - Canada

• Document type: Journal article
• Source: NEW JOURNAL OF CHEMISTRY; v. 43, n. 4, p. 1757-1763, JAN 28 2019.
• Web of Science Citations: 2

Abstract

A comprehensive description on the conformational behaviour of small peptide models is of primary importance to elucidate polypeptide and protein structures and folding pathways. In this paper, an extensive conformational investigation of N-acetyl-N-methylprolineamide (Ac-Pro-NHMe) in both isolated phase and in solution is reported. The joint use of H-1 NMR spectroscopy and DFT calculations allowed to determine the most stable conformers of Ac-Pro-NHMe and to evaluate its conformational preferences in different media. Theoretical calculations at the M06-2X/aug-cc-pVTZ level of theory led to the identification of two and six stable conformers in isolated phase and solution, respectively. These geometries reveal the presence of two isomers, where the -NC(O)Me bond can assume a trans ( = 180 degrees) or cis ( = 0 degrees) orientation in relation to the -(CO)NHMe group of backbone. The theoretical results show that the trans,trans-IId in a down-puckered -turn-like structure and = 180 degrees, is the most populated conformer in isolated phase. In polar solvents, like acetonitrile and DMSO, there is a mixture of both polyproline II and -helix-like conformers, while in water, the trans,trans-IIu, in an up-puckered polyproline II-like geometry, is the less energetic. Therefore, our results show that conformer populations change upon solvent variation, indicating that the conformational equilibrium of Ac-Pro-NHMe is sensitive to solvent effects. The experimental population values, obtained through the integration of the peaks in the H-1 NMR spectrum, confirm the change of conformer populations in different solvents. The results reveal that the theoretical level employed in this study is in good agreement with experimental data. QTAIM and NCI analyses combined with orbital-based NBO calculations reveal that the conformers trans,trans-IId and trans,trans-IIu are stabilized by an intramolecular hydrogen bond (IHB) C?OHN in isolated phase. However, these geometries are completely destabilized in solution by the weakening of this interaction. Although IHB is essential to the stability of the two conformers in isolated phase, it represents only a secondary factor to the conformational preferences of the compound. The highest stability of trans,trans-IId in isolated phase can be attributed to hyperconjugative interactions. In solution, an interplay of hyperconjugative, steric and electrostatic effects rules the conformational preferences of Ac-Pro-NHMe. (AU)

• FAPESP's process: 12/18567-4 - Conformational investigation of amino acid derivatives and corresponding intramolecular interactions through NMR and IR spectroscopies and theoretical calculations
• Grantee: Carolyne Brustolin Braga
• Support Opportunities: Scholarships in Brazil - Doctorate
• FAPESP's process: 16/24109-0 - Conformational Analysis of Some Aliphatic Esters Bearing a Nitrogen Atom as a Substituent
• Grantee: Roberto Rittner Neto
• Support Opportunities: Regular Research Grants
• FAPESP's process: 16/12005-5 - Conformational analyses of aminoacids derivatives: a theoretical and experimental approach
• Grantee: Weslley Guilherme Dias de Paiva Silva
• Support Opportunities: Scholarships in Brazil - Master