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(Reference retrieved automatically from Web of Science through information on FAPESP grant and its corresponding number as mentioned in the publication by the authors.)

Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication

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Author(s):
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Wu, G. Albert [1] ; Prochnik, Simon [2] ; Jenkins, Jerry [3] ; Salse, Jerome [4] ; Hellsten, Uffe [5] ; Murat, Florent [6] ; Perrier, Xavier [7] ; Ruiz, Manuel [8] ; Scalabrin, Simone [9] ; Terol, Javier [10] ; Takita, Marco Aurelio [11] ; Labadie, Karine [12] ; Poulain, Julie [13] ; Couloux, Arnaud [14] ; Jabbari, Kamel [15] ; Cattonaro, Federica [16] ; Del Fabbro, Cristian [17] ; Pinosio, Sara [18] ; Zuccolo, Andrea [19] ; Chapman, Jarrod [20] ; Grimwood, Jane [21] ; Tadeo, Francisco R. [22] ; Estornell, Leandro H. [23] ; Munoz-Sanz, Juan V. [24] ; Ibanez, Victoria [25] ; Herrero-Ortega, Amparo [26] ; Aleza, Pablo [27] ; Perez-Perez, Julian [28] ; Ramon, Daniel [29] ; Brunel, Dominique [30] ; Luro, Francois [31] ; Chen, Chunxian [32] ; Farmerie, William G. [33] ; Desany, Brian [34] ; Kodira, Chinnappa [35] ; Mohiuddin, Mohammed [36] ; Harkins, Tim [37] ; Fredrikson, Karin [38] ; Burns, Paul [39] ; Lomsadze, Alexandre [40] ; Borodovsky, Mark [41] ; Reforgiato, Giuseppe [42] ; Freitas-Astua, Juliana [43] ; Quetier, Francis [44] ; Navarro, Luis [45] ; Roose, Mikeal [46] ; Wincker, Patrick [47] ; Schmutz, Jeremy [48] ; Morgante, Michele [49] ; Machado, Marcos Antonio [50] ; Talon, Manuel [51] ; Jaillon, Olivier [52] ; Ollitrault, Patrick [53] ; Gmitter, Frederick [54] ; Rokhsar, Daniel [55]
Total Authors: 55
Affiliation:
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[1] US DOE. Joint Genome Inst
[2] US DOE. Joint Genome Inst
[3] HudsonAlpha Biotechnol Inst. Huntsville
[4] UBA. INRA
[5] US DOE. Joint Genome Inst
[6] UBA. INRA
[7] Ctr Cooperat Int Rech Agronom Dev CIRAD. UMR Arneliorat Genet & Adaptat Plantes Mediterran
[8] Ctr Cooperat Int Rech Agronom Dev CIRAD. UMR Arneliorat Genet & Adaptat Plantes Mediterran
[9] Ist Genom Applicata. Udine
[10] IVIA. Ctr Genom
[11] Inst Agron IAC. Ctr Citricultura Sylvio Moreira
[12] Genoscope. CEA
[13] Genoscope. CEA
[14] Genoscope. CEA
[15] Genoscope. CEA
[16] Ist Genom Applicata. Udine
[17] Ist Genom Applicata. Udine
[18] Ist Genom Applicata. Udine
[19] Ist Genom Applicata. Udine
[20] US DOE. Joint Genome Inst
[21] HudsonAlpha Biotechnol Inst. Huntsville
[22] IVIA. Ctr Genom
[23] IVIA. Ctr Genom
[24] IVIA. Ctr Genom
[25] IVIA. Ctr Genom
[26] IVIA. Ctr Genom
[27] Inst Valenciano Invest Agr. Ctr Protecc Vegetal & Biotecnol
[28] Lifesequencing. Valencia
[29] Lifesequencing. Valencia
[30] Genoscope. CEA
[31] INRA Genete & Ecophysiol Qualite Agrumes GEQA. San Giuliano
[32] Univ Florida. CREC
[33] Univ Florida. Interdisciplinary Ctr Biotechnol Res
[34] Roche. Life Sci 454
[35] Roche. Life Sci 454
[36] Roche. Life Sci 454
[37] Roche. Life Sci 454
[38] Roche. Life Sci 454
[39] Georgia Inst Technol. Wallace H Coulter Dept Biomed Engn
[40] Georgia Inst Technol. Wallace H Coulter Dept Biomed Engn
[41] Georgia Inst Technol. Wallace H Coulter Dept Biomed Engn
[42] Consiglio Ric & Sperimentaz Agr CRA ACM. Acireale
[43] Inst Agron IAC. Ctr Citricultura Sylvio Moreira
[44] Genoscope. CEA
[45] Inst Valenciano Invest Agr. Ctr Protecc Vegetal & Biotecnol
[46] Univ Calif Riverside. Dept Bot & Plant Sci
[47] Genoscope. CEA
[48] HudsonAlpha Biotechnol Inst. Huntsville
[49] Ist Genom Applicata. Udine
[50] Inst Agron IAC. Ctr Citricultura Sylvio Moreira
[51] IVIA. Ctr Genom
[52] Genoscope. CEA
[53] Ctr Cooperat Int Rech Agronom Dev CIRAD. UMR Arneliorat Genet & Adaptat Plantes Mediterran
[54] Univ Florida. CREC
[55] US DOE. Joint Genome Inst
Total Affiliations: 55
Document type: Journal article
Source: NATURE BIOTECHNOLOGY; v. 32, n. 7, p. 656+, JUL 2014.
Web of Science Citations: 5
Abstract

Cultivated citrus are selections from, or hybrids of, wild progenitor species whose identities and contributions to citrus domestication remain controversial. Here we sequence and compare citrus genomes-a high-quality reference haploid clementine genome and mandarin, pummelo, sweet-orange and sour-orange genomes- and show that cultivated types derive from two progenitor species. Although cultivated pummelos represent selections from one progenitor species, Citrus maxima, cultivated mandarins are introgressions of C. maxima into the ancestral mandarin species Citrus reticulata. The most widely cultivated citrus, sweet orange, is the offspring of previously admixed individuals, but sour orange is an F1 hybrid of pure C. maxima and C. reticulata parents, thus implying that wild mandarins were part of the early breeding germplasm. A Chinese wild `mandarin' diverges substantially from C. reticulata, thus suggesting the possibility of other unrecognized wild citrus species. Understanding citrus phylogeny through genome analysis clarifies taxonomic relationships and facilitates sequence-directed genetic improvement. (AU)

FAPESP's process: 08/57909-2 - Genomic platforms applied to citrus breeding
Grantee:Marcos Antonio Machado
Support Opportunities: Research Projects - Thematic Grants