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Evaluation of genomic instability by analysis of the nuclear three-dimensional organization of telomeres in myelodysplastic syndrome (MDS)

Abstract

The evaluation of the genomic instability by strategies that apply nuclear three-dimensional (3D) reconstitution involving constrained interative (deconvolution) represents an original approach to study blood neoplasias (leukemias, lymphomas and myelodysplastic syndrome). Genes and telomeres alterations at the chromosomal level, can be evaluated by molecular cytogenetics on neoplastic cells. The chromosome analysis will illustrate the consequences of abnormalities in telomeres. The origin of these alterations and their impact on genomic instability with simultaneous cellular transformation are questions to be answered using methodologies that apply the study and 3D quantification of interphase nucleus and its subcellular structures. These data are validated independently using methods that apply molecular cytogenetics to metaphase and interphase chromosomes, including spectral karyotyping (SKY) and quantitative fluorescence in situ hybridization (qFISH) of the telomeres and genes, respectively. Thus, the goals of this investigation are to evaluate and estimate the levels of genomic instability measuring the disposition, size and frequency of aggregate telomeres and the genes AURKA, AURKB and TP53, using FISH and deconvolution methods in patients with myelodisplastic syndrome (MDS, CD34+ cells), compared with cells of healthy individuals. From the data obtained, a model of leukemic progression for MDS will be established. Considering the objectives proposed, the application of a new strategy that applies three-dimensional nuclear reconstitution will allow for the establishment of new projects with research groups that also study neoplasias in human cells or in animal models. We predict that the identification of new alterations relevant to diagnosis and prognosis will enable the development of new therapeutic strategies for the neoplasia investigated here. (AU)

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Scientific publications (5)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
DE OLIVEIRA, FABIO MORATO; NUNES RODRIGUES-ALVES, ANA PAULA; LUCENA-ARAUJO, ANTONIO ROBERTO; SILVA, FERDINANDO DE PAULA; DA SILVA, FERNANDA BORGES; FALCAO, ROBERTO PASSETTO. Mantle cell lymphoma harboring Burkitt's-like translocations presents differential expression of aurora kinase genes compared with others 8q abnormalities. MEDICAL ONCOLOGY, v. 31, n. 5, . (11/01647-2)
OLIVEIRA, F.; LUCENA-ARAUJO, A.; FAVARIN, M.; LEITE-CUEVA, S.; PALMA, P.; REGO, E.; COVAS, D.; FONTES, A.; FALCAO, R.. DIFFERENTIAL EXPRESSION OF AURKA AND AURKB GENES IN BONE MARROW STROMAL MESENCHYMAL CELLS (MSCS) OF MYELODISPLASTIC SYNDROME (MDS): CORRELATION WITH G-BANDING ANALYSIS, SKY AND FISH. Haematologica, v. 97, p. 1-pg., . (11/01647-2)
DE OLIVEIRA, FABIO MORATO; MIGUEL, CARLOS EDUARDO; LUCENA-ARAUJO, ANTONIO ROBERTO; GOUVEA DE LIMA, ANA SILVIA; FALCAO, ROBERTO PASSETTO; REGO, EDUARDO MAGALHAES. FISH analysis for TET2 deletion in a cohort of 362 Brazilian myeloid malignancies: correlation with karyotype abnormalities. MEDICAL ONCOLOGY, v. 30, n. 1, . (11/01647-2)
DE OLIVEIRA, FABIO MORATO; LUCENA-ARAUJO, ANTONIO ROBERTO; FAVARIN, MARIA DO CARMO; BONINI PALMA, PATRICIA VIANNA; REGO, EDUARDO MAGALHAES; FALCAO, ROBERTO PASSETTO; COVAS, DIMAS TADEU; FONTES, APARECIDA MARIA. Differential expression of AURKA and AURKB genes in bone marrow stromal mesenchymal cells of myelodysplastic syndrome: correlation with G-banding analysis and FISH. Experimental Hematology, v. 41, n. 2, p. 198-208, . (11/01647-2)
OLIVEIRA, F.; RODRIGUES-ALVES, A.; SILVA, F.; LIPOLI, V.; FALCAO, R.. INCIDENCE AND CHARACTERIZATION OF ADDITIONAL CHROMOSOMAL ABNORMALITIES IN MANTLE CELL LYMPHOMA (MCL) BY G-BANDING AND MOLECULAR CYTOGENETIC APPROACH.. Haematologica, v. 97, p. 1-pg., . (11/01647-2)