Minimum Model of Metallic Nanoparticle Surface and Cluster for DNA Nanosensors Optimization

• Grant number: 11/13250-0
• Support Opportunities: Regular Research Grants
• Start date: November 01, 2011
• End date: October 31, 2013
• Field of knowledge: Physical Sciences and Mathematics - Physics - Condensed Matter Physics
• Principal Investigator: Priscila Pereira Fávero
• Grantee: Priscila Pereira Fávero
• Host Institution: Instituto de Pesquisa e Desenvolvimento (IP&D). Universidade do Vale do Paraíba (UNIVAP). São José dos Campos , SP, Brazil
• City of the host institution: São José dos Campos
• Associated researchers: Airton Abrahao Martin ; Lara Kühl Teles ; Leandro José Raniero ; Marcelo Marques ; Renata de Azevedo Canevari

Abstract

Despite the synthesis techniques and characterization of nanoparticles have reached a ripening stage, with commercial applications, the validation of theoretical simulations of such systems is still a matter of debate. This reality is mainly attributed to the fact that modeling involves the need of neglecting controversial elements. The research presented in this project aims to contribute to the elucidation of these issues by proposing a protocol for modeling metallic nanoparticles surfaces in colloids, and another protocol for the establishment of a minimal model of DNA adsorbed nanoparticles agglomeration, both models in atomic scale and absent in the literature. In this study we use VASP and Gaussian programs which are based on Density Functional Theory. Once the protocols are established, they will be applied to support theoretically the experimental project developed at the Laboratory of Biomedical Vibrational Spectroscopy at University of Vale do Paraiba, with the aim of producing metallic nanoparticles functionalized with DNA oligonucleotides for Paracoccidioides Brasiliensis diagnosis (FAPESP-2009/09559-5). In this context, the study of the nanoparticle surface will provide the necessary theoretical support for the interpretations of data and details of the molecular interactions involved in nanoparticles stabilization and agglomeration, before and after the DNA detection. With the protocol, the DNA Nanosensor constituents will be changed in order to obtain an optimum detection prototype to be synthesized by other group members. The knowledge gained can be extended without difficulty to the study of nanosensors applied to the diagnosis of other diseases. (AU)

Scientific publications

(5)

(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)

MACHADO, NEILA; CARVALHO, B. G.; TELLEZ SOTO, C. A.; MARTIN, A. A.; FAVERO, P. P.. DFT application for chlorin derivatives photosensitizer drugs modeling. SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, v. 195, p. 68-74, APR 15 2018. (11/13250-0, 13/17247-9, 14/05975-2)

ANTONIO CARITA, LUCAS; RODRIGUES, IRAPUAN; PUERARI, I; ARANHA SCHIAVO, LUIZ EDUARDO CAMARGO. Chaos in growing bar models. REVISTA MEXICANA DE ASTRONOMIA Y ASTROFISICA, v. 55, n. 2, p. 321-335, OCT 2019. (13/17247-9, 11/13250-0)

MACHADO, N. C. F.; DOS SANTOS, L.; CARVALHO, B. G.; SINGH, P.; TELLEZ SOTO, C. A.; AZOIA, N. G.; CAVACO-PAULO, A.; MARTIN, A. A.; FAVERO, P. P.. Assessment of penetration of Ascorbyl Tetraisopalmitate into biological membranes by molecular dynamics. COMPUTERS IN BIOLOGY AND MEDICINE, v. 75, p. 151-159, AUG 1 2016. (11/13250-0, 13/17247-9, 14/05975-2)

ROSA, D. A.; RODRIGUES, I; KRABBE, A. C.; MILONE, A. C.; CARVALHO, S.. The physical properties and evolution of the interacting system AM1204-292. Monthly Notices of the Royal Astronomical Society, v. 501, n. 3, p. 3750-3766, MAR 2021. (13/17247-9, 14/10489-0, 16/21532-9, 11/13250-0)

CARVALHO, B. G.; FAGUNDES, J.; MARTIN, A. A.; RANIERO, L.; FAVERO, P. P.; CARTWRIGHT, AN; NICOLAU, DV. DNA Nanosensor Surface Grafting and Salt Dependence. NANOSCALE IMAGING, SENSING, AND ACTUATION FOR BIOMEDICAL APPLICATIONS X, v. 8594, p. 7-pg., 2013-01-01. (11/13250-0)