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Computational study of thermodynamic association of self­-assembled systems

Grant number:12/15147-4
Support Opportunities:Regular Research Grants
Start date: June 01, 2013
End date: May 31, 2015
Field of knowledge:Physical Sciences and Mathematics - Chemistry - Physical-Chemistry
Principal Investigator:André Farias de Moura
Grantee:André Farias de Moura
Host Institution: Centro de Ciências Exatas e de Tecnologia (CCET). Universidade Federal de São Carlos (UFSCAR). São Carlos , SP, Brazil
City of the host institution:São Carlos

Abstract

This research project describes the computational theoretical study of the thermodynamic potentials which are responsible for the spontaneous formation of self-assembled and self-organized structures in aqueous solution. Molecular dynamics simulations will be performed in order to study a prototypical micellar system. The relaxation times for systems like these are prohibitively long, so that in general a spontaneous association cannot be observed during the course of a typical molecular dynamics if realistic potentials should be employed, since the potential surface becomes too much complex to be sampled within the total duration reached by the integration of the equations of motion. This difficulty is particularly real for the calculation of entropic properties, as the entropy cannot be obtained as an ensemble average, being necessary, in principle, to know all the accessible states of the system in its phase space. Thus, our research proposal is focused on the usage of alternative techniques to study thermodynamic potentials, including the entropic ones, along the reaction coordinates describing the association/dissociation of surfactant molecules into micelles. More specifically, we shall perform molecular dynamics simulations with the umbrella sampling potential to map the potential of mean force during the removal of one molecule from the aggregates under study. The potential of mean force describes the Gibbs energy variation along the reaction coordinate, being possible to split it into its enthalpic and entropic components. It is possible as well to separate the contributions arising from the head and the apolar tail, evaluating quantitatively for the first time the effect of each part on the thermodynamics of the process. (AU)

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Scientific publications (20)
(The scientific publications listed on this page originate from the Web of Science or SciELO databases. Their authors have cited FAPESP grant or fellowship project numbers awarded to Principal Investigators or Fellowship Recipients, whether or not they are among the authors. This information is collected automatically and retrieved directly from those bibliometric databases.)
BERNARDINO, KALIL; SWIERGIEL, JOLANTA; JADZYN, JAN; BOUTEILLER, LAURENT; DE MOURA, ANDRE FARIAS. Bulkiness as a design element to increase the rigidity and macrodipole of supramolecular polymers. JOURNAL OF MOLECULAR LIQUIDS, v. 286, . (17/12063-8, 13/07296-2, 12/15147-4)
BERNARDINO, K.; PINTO, M. E. F.; BOLZANI, V. S.; DE MOURA, A. F.; BATISTA JUNIOR, J. M.. Pinpointing disulfide connectivities in cysteine-rich proteins. CHEMICAL COMMUNICATIONS, v. 53, n. 53, p. 7337-7340, . (15/07089-2, 13/07600-3, 14/25222-9, 14/50304-9, 13/07296-2, 12/15147-4)
DE MOURA, ANDRE F.; BERNARDINO, KALIL; DALMASCHIO, CLEOCIR J.; LEITE, EDSON R.; KOTOV, NICHOLAS A.. Thermodynamic insights into the self-assembly of capped nanoparticles using molecular dynamic simulations. Physical Chemistry Chemical Physics, v. 17, n. 5, p. 3820-3831, . (12/15147-4)
SUN, MAOZHONG; XU, LIGUANG; QU, AIHUA; ZHAO, PENG; HAO, TIANTIAN; MA, WEI; HAO, CHANGLONG; WEN, XIAODONG; COLOMBARI, FELIPPE M.; DE MOURA, ANDRE F.; et al. Site-selective photoinduced cleavage and profiling of DNA by chiral semiconductor nanoparticles. NATURE CHEMISTRY, v. 10, n. 8, p. 821-830, . (13/07296-2, 12/15147-4)
CASTRO, CAIO B.; SILVEIRA, RAFAEL G.; COLOMBARI, FELIPPE M.; DE MOURA, ANDRE FARIAS; NASCIMENTO, OTACIRO R.; MARQUES NETTO, CATERINA G. C.. Solvent Effect on the Regulation of Urea Hydrolysis Reactions by Copper Complexes. CHEMISTRY-SWITZERLAND, v. 2, n. 2, p. 20-pg., . (13/07296-2, 12/15147-4, 16/01622-3)
XU, LIGUANG; WANG, XIUXIU; WANG, WEIWEI; SUN, MAOZHONG; CHOI, WON JIN; KIM, JI-YOUNG; HAO, CHANGLONG; LI, SI; QU, AIHUA; LU, MEIRU; et al. nantiomer-dependent immunological response to chiral nanoparticle. Nature, v. 601, n. 7893, p. 366+, . (13/07296-2, 12/15147-4)
JIANG, WENFENG; QU, ZHI-BEI; KUMAR, PRASHANT; VECCHIO, DREW; WANG, YUEFEI; MA, YU; BAHNG, JOONG HWAN; BERNARDINO, KALIL; GOMES, WEVERSON R.; COLOMBARI, FELIPPE M.; et al. Emergence of complexity inhierarchically organized chiral particles. Science, v. 368, n. 6491, SI, p. 642+, . (09/54035-4, 17/12063-8, 13/07296-2, 12/15147-4)
YEOM, JIHYEON; SANTOS, UALLISSON S.; CHEKINI, MAHSHID; CHA, MINJEONG; DE MOURA, ANDRE F.; KOTOV, NICHOLAS A.. Chiromagnetic nanoparticles and gels. Science, v. 359, n. 6373, p. 309+, . (13/07296-2, 12/15147-4)
LU, JUN; XUE, YAO; BERNARDINO, KALIL; ZHANG, NING-NING; GOMES, WEVERSON R.; RAMESAR, NAOMI S.; LIU, SHUHAN; HU, ZHENG; SUN, TIANMENG; DE MOURA, ANDRE FARIAS; et al. Enhanced optical asymmetry in supramolecular chiroplasmonic assemblies with long-range order. Science, v. 371, n. 6536, p. 1368+, . (17/12063-8, 13/07296-2, 12/15147-4)
CHOI, WON JIN; YANO, KEIICHI; CHA, MINJEONG; COLOMBARI, FELIPPE M.; KIM, JI-YOUNG; WANG, YICHUN; LEE, SANG HYUN; SUN, KAI; KRUGER, JOHN M.; DE MOURA, ANDRE F.; et al. Chiral phonons in microcrystals and nanofibrils of biomolecules. Nature Photonics, v. 16, n. 5, p. 9-pg., . (12/15147-4, 13/07296-2)
CAI, JIARONG; ZHANG, WEI; XU, LIGUANG; HAO, CHANGLONG; MA, WEI; SUN, MAOZHONG; WU, XIAOLING; QIN, XIAN; COLOMBARI, FELIPPE MARIANO; DE MOURA, ANDRE FARIAS; et al. Polarization-sensitive optoionic membranes from chiral plasmonic nanoparticles. NATURE NANOTECHNOLOGY, v. 17, n. 4, p. 10-pg., . (14/50249-8, 15/12851-0, 17/11986-5, 12/15147-4, 13/07296-2)
ALVARENGA, BRUNO GIORDANO; BERNARDINO, KALIL; DE MOURA, ANDRE FARIAS; SABADINI, EDVALDO. Two different pathways for assembling bis-urea in benzene and toluene. Journal of Molecular Modeling, v. 24, n. 7, . (14/04515-8, 13/07296-2, 12/15147-4)
BERNARDINO, KALIL; DE MOURA, ANDRE FARIAS. Electrostatic potential and counterion partition between flat and spherical interfaces. Journal of Chemical Physics, v. 150, n. 7, . (17/12063-8, 13/07296-2, 12/15147-4)
MA, WEI; XU, LIGUANG; DE MOURA, ANDRE F.; WU, XIAOLING; KUANG, HUA; XU, CHUANLAI; KOTOV, NICHOLAS A.. Chiral Inorganic Nanostructures. CHEMICAL REVIEWS, v. 117, n. 12, p. 8041-8093, . (13/07296-2, 12/15147-4)
BERNARDINO, KALIL; DE MOURA, ANDRE F.. Aggregation Thermodynamics of Sodium Octanoate Micelles Studied by Means of Molecular Dynamics Simulations. Journal of Physical Chemistry B, v. 117, n. 24, p. 7324-7334, . (12/15147-4)
COLOMBARI, FELIPPE M.; DE MOURA, ANDRE F.; FREITAS, LUIZ CARLOS G.. Chiral recognition of liquid phase dimers from gamma-valerolactone racemic mixture. Journal of Molecular Modeling, v. 24, n. 8, . (12/15147-4)
GAO, RUI; XU, LIGUANG; SUN, MAOZHONG; XU, MANLIN; HAO, CHANGLONG; GUO, XIAO; COLOMBARI, FELIPPE MARIANO; ZHENG, XIN; KRAL, PETR; DE MOURA, ANDRE F.; et al. Site-selective proteolytic cleavage of plant viruses by photoactive chiral nanoparticles. NATURE CATALYSIS, v. 5, n. 8, p. 16-pg., . (12/15147-4, 13/07296-2)
GAO, RUI; XU, XINXIN; KUMAR, PRASHANT; LIU, YE; ZHANG, HONGYU; GUO, XIAO; SUN, MAOZHONG; COLOMBARI, FELIPPE MARIANO; MOURA, ANDRE F. DE; HAO, CHANGLONG; et al. Tapered chiral nanoparticles as broad- spectrum thermally stable antivirals for SARS-CoV-2 variants. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v. 121, n. 13, p. 10-pg., . (13/07296-2, 12/15147-4)
JIANG, WENFENG; QU, ZHI-BEI; KUMAR, PRASHANT; VECCHIO, DREW; WANG, YUEFEI; MA, YU; BAHNG, JOONG HWAN; BERNARDINO, KALIL; GOMES, WEVERSON R.; COLOMBARI, FELIPPE M.; et al. Emergence of complexity inhierarchically organized chiral particles. Science, v. 368, n. 6491, p. 80-pg., . (17/12063-8, 13/07296-2, 12/15147-4, 09/54035-4)