GenSeed-HMM: development of a platform for sequence reconstruction and application on novel virus discovery

• Grant number: 10/04609-1
• Support Opportunities: Scholarships in Brazil - Master
• Start date: September 01, 2010
• End date: March 31, 2012
• Field of knowledge: Biological Sciences - Biochemistry - Molecular Biology
• Principal Investigator: Arthur Gruber
• Grantee: André Luiz de Oliveira
• Host Institution: Instituto de Ciências Biomédicas (ICB). Universidade de São Paulo (USP). São Paulo , SP, Brazil

Scientific publications

(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)

ALVES, JOAO M. P.; DE OLIVEIRA, ANDRE L.; SANDBERG, TATIANA O. M.; MORENO-GALLEGO, JAIME L.; DE TOLEDO, MARCELO A. F.; DE MOURA, ELISABETH M. M.; OLIVEIRA, LILANE S.; DURHAM, ALAN M.; MEHNERT, DOLORES U.; ZANOTTO, PAOLO M. DE A.; et al. GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data. FRONTIERS IN MICROBIOLOGY, v. 7, MAR 4 2016. (10/04609-1, 13/14622-3)

Academic Publications

(References retrieved automatically from State of São Paulo Research Institutions)

OLIVEIRA, André Luiz de. GenSeed-HMM: development of a platform for sequence reconstruction and application on next-generation sequencing data.. 2012. Master's Dissertation - Universidade de São Paulo (USP). Instituto de Ciências Biomédicas (ICB/SDI) São Paulo.