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Evaluation of genomic synteny between sorghum (Sorghum bicolor) and sugarcane (Saccharum officinarum): comparision of genes involved in a QTL for Brix in sorghum to syntenic region in sugarcane

Grant number: 14/11482-9
Support Opportunities:Scholarships in Brazil - Post-Doctoral
Start date: October 01, 2014
End date: October 31, 2018
Field of knowledge:Agronomical Sciences - Agronomy - Crop Science
Agreement: Coordination of Improvement of Higher Education Personnel (CAPES)
Principal Investigator:Anete Pereira de Souza
Grantee:Melina Cristina Mancini
Host Institution: Centro de Biologia Molecular e Engenharia Genética (CBMEG). Universidade Estadual de Campinas (UNICAMP). Campinas , SP, Brazil
Associated scholarship(s):17/05014-0 - Analysis of genes involved in a QTL for brix in Saccharum species, BE.EP.PD

Abstract

The sugarcane is a polyploid and aneuploid species, which makes its genetics and genomics research a challenge. Its cultivation places Brazil as the largest producer, followed by India and China. Nowadays sugarcane is a crop of major economic importance, a fact attributed to its derivatives, sugar and ethanol, that are responsible for the large financial support and scientific research. Given the advances that can be achieved in a further study of a specific region of the genome, this project is based in the premise of a high syntenic relationship existent between sorghum and sugarcane genomes for the detection of genes for Brix (soluble solid content) present in a QTL (quantitative trait loci). The use of BACs (bacterial artificial chromosome) as a molecular tool for making sugarcane into a "haploid" organism, where each allele can be studied individually, enables the transfer and application of genetic and molecular information derived from sorghum to the genome of the sugarcane, bringing significant practical implications in the improvement of the species. (AU)

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Scientific publications (6)
(References retrieved automatically from Web of Science and SciELO through information on FAPESP grants and their corresponding numbers as mentioned in the publications by the authors)
MANCINI, MELINA C.; CARDOSO-SILVA, CLAUDIO B.; SFORCA, DANILO A.; DE SOUZA, ANETE PEREIRA. "Targeted Sequencing by Gene Synteny," a New Strategy for Polyploid Species: Sequencing and Physical Structure of a Complex Sugarcane Region. FRONTIERS IN PLANT SCIENCE, v. 9, p. 8-pg., . (17/05014-0, 14/11482-9, 15/16399-5, 08/52197-4)
MANCINI, MELINA C.; CARDOSO-SILVA, CLAUDIO B.; SFORCA, DANILO A.; DE SOUZA, ANETE PEREIRA. ``Targeted Sequencing by Gene Synteny,{''} a New Strategy for Polyploid Species: Sequencing and Physical Structure of a Complex Sugarcane Region. FRONTIERS IN PLANT SCIENCE, v. 9, . (17/05014-0, 15/16399-5, 14/11482-9, 08/52197-4)
AONO, ALEXANDRE HILD; GONZAGA PIMENTA, RICARDO JOSE; BASSO GARCIA, ANA LETYCIA; CORRER, FERNANDO HENRIQUE; HOSAKA, GUILHERME KENICHI; CARRASCO, MARISHANI MARIN; CARDOSO-SILVA, CLAUDIO BENICIO; MANCINI, MELINA CRISTINA; SFORCA, DANILO AUGUSTO; DOS SANTOS, LUCAS BORGES; et al. The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns. FRONTIERS IN PLANT SCIENCE, v. 12, . (14/11482-9, 18/18588-8, 19/03232-6, 15/22993-7, 15/16399-5, 08/52197-4, 19/21682-9, 05/55258-6, 19/19340-2)
SFORCA, DANILO AUGUSTO; VAUTRIN, SONIA; CARDOSO-SILVA, CLAUDIO BENICIO; MANCINI, MELINA CRISTINA; ROMERO-DA CRUZ, MARIA VICTORIA; PEREIRA, GUILHERME DA SILVA; CONTE, MONICA; BELLEC, ARNAUD; DAHMER, NAIR; FOURMENT, JOELLE; et al. Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions. FRONTIERS IN PLANT SCIENCE, v. 10, . (15/16399-5, 08/52197-4, 14/11482-9)
AONO, ALEXANDRE HILD; COSTA, ESTELA ARAUJO; SILVA RODY, HUGO VIANNA; NAGAI, JAMES SHINITI; GONZAGA PIMENTA, RICARDO JOSE; MANCINI, MELINA CRISTINA; CAMILO DOS SANTOS, FERNANDA RAQUEL; PINTO, LUCIANA ROSSINI; DE ANDRADE LANDELL, MARCOS GUIMARAES; DE SOUZA, ANETE PEREIRA; et al. Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance. SCIENTIFIC REPORTS, v. 10, n. 1, . (18/18588-8, 05/55258-6, 14/11482-9, 08/52197-4, 19/03232-6)
CARDOSO-SILVA, CLAUDIO BENICIO; AONO, ALEXANDRE HILD; MANCINI, MELINA CRISTINA; SFORCA, DANILO AUGUSTO; DA SILVA, CARLA CRISTINA; PINTO, LUCIANA ROSSINI; ADAMS, KEITH L.; DE SOUZA, ANETE PEREIRA. Taxonomically Restricted Genes Are Associated With Responses to Biotic and Abiotic Stresses in Sugarcane (Saccharum spp.). FRONTIERS IN PLANT SCIENCE, v. 13, p. 13-pg., . (14/11482-9, 15/16399-5, 19/03232-6, 15/24346-9, 17/26781-0, 08/52197-4)